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Citation
Taxa
Matrices
Trees
Analyses
Matrix 15966 of Study 13888
Citation title: "Evolution of host affiliation and substrate preference in a cosmopolitan fungal genus with evidence of interkingdom host jumps and major shifts in ecology".
Study name: "Evolution of host affiliation and substrate preference in a cosmopolitan fungal genus with evidence of interkingdom host jumps and major shifts in ecology".
This study is part of submission 13888
(Status: Published).
Matrices
Title: ITS
Rows
| Taxon Label | Row Segments | Characters 1?–30 |
|---|---|---|
| Hypocrea aeruginea | (none) | ------------------------------ |
| Trichoderma aggressivum | (none) | AAAGTCGTAACAAGGTCTCCGTTGGTGAAC |
| Hypocrea alcalifuscescens | (none) | ------------------------------ |
| Hypocrea alni | (none) | ------------------------------ |
| Hypocrea alutacea | (none) | ------------------------------ |
| Trichoderma amazonicum | (none) | ------------------------------ |
| Hypocrea americana | (none) | ------------------------------ |
| Hypocrea andinensis | (none) | ------------------------------ |
| Trichoderma arundinaceum | (none) | -----CGTAACAAGGTCTCCGTTGGTGAAC |
| Trichoderma asperelloides | (none) | ------------------------------ |
| Trichoderma asperellum | (none) | GAAGTCGTAACAAGGTCTCCGTTGGTGAAC |
| Trichoderma atrogelatinosum | (none) | ------------------------------ |
| Trichoderma atroviride | (none) | -AAGTCGTAACAAGGTCTCCGTTGGTGAAC |
| Trichoderma aureoviride | (none) | GAAGTCGTAACAAGGTCTCCGTTGGTGAAC |
| Trichoderma austrokoningii | (none) | ------------------------------ |
| Hypocrea avellanea | (none) | ----------CAAGGTCTCCGTTGGTGAAC |
| Trichoderma brevicompactum | (none) | ------------------------------ |
| Trichoderma brunneoviride | (none) | ------------------------------ |
| Trichoderma candidum | (none) | ------------------------------ |
| Trichoderma caribbaeum | (none) | --AGTCGTAACAAGGTCTCCGTTGGTGAAC |
| Trichoderma catoptron | (none) | ------------------------------ |
| Trichoderma ceraceum | (none) | ------------------------------ |
| Trichoderma ceramicum | (none) | ------------------------------ |
| Trichoderma cerinum | (none) | ------------------------------ |
| Hypocrea chionea | (none) | -AAGTCGTAACAAGGTCTCCGTTGGTGAAC |
| Trichoderma chlorosporum | (none) | -----------------------------A |
| Trichoderma chromospermum | (none) | ------------------------------ |
| Trichoderma cinereoflava | (none) | ------------------------------ |
| Trichoderma cinnamomeum | (none) | ------------------------------ |
| Trichoderma citrinoviride | (none) | ------------------------------ |
| Trichoderma costaricensis | (none) | -----------------TCCGTAGGTGAAC |
| Trichoderma crassum | (none) | ------------------------------ |
| Trichoderma cremeum | (none) | ------------------------------ |
| Hypocrea crystalligena | (none) | ------------------------------ |
| Trichoderma cuneisporum | (none) | ------------------------------ |
| Hypocrea dacrymycella | (none) | ------------------------------ |
| Hypocrea danica | (none) | ------------------------------ |
| Hypocrea decipiens | (none) | ------------------------------ |
| Hypocrea delicatula | (none) | ------------------------------ |
| Trichoderma dingleyae | (none) | -AAGTCGTAACAAGGTCTCCGTTGGTGAAC |
| Trichoderma dorotheae | (none) | -AAGTCGTAACAAGGTCTCCGTTGGTGAAC |
| Hypocrea epimyces | (none) | ------------------------------ |
| Trichoderma erinaceus | (none) | ------------------------------ |
| Trichoderma estonicum | (none) | ------------------------------ |
| Hypocrea eucorticioides | (none) | ------------------------------ |
| Trichoderma evansii | (none) | ----------CAAGGTCTCCGTTGGTGAAC |
| Trichoderma fertile | (none) | ------------------------------ |
| Hypocrea flaviconidia | (none) | ------------------------------ |
| Hypocrea fomiticola | (none) | ------------------------------ |
| Trichoderma gamsii | (none) | ------------------------------ |
| Trichoderma gelatinosum | (none) | -----------------------GGTGAAC |
| Trichoderma ghanense | (none) | AAAGTCGTAACAAGGTCTCCGTTGGTGAAC |
| Trichoderma hamatum01 | (none) | GAAGTCGTAACAAGGTCTCCGTTGGTGAAC |
| Trichoderma hamatum02 | (none) | ------------------------------ |
| Trichoderma hamatum03 | (none) | -----------AAGGTCTCCGTTGGTGAAC |
| Trichoderma harzianum01 | (none) | ----------CAAGGTCTCCGTTGGTGAAC |
| Trichoderma harzianum02 | (none) | ---AGTGTAACAAGGTCTCCGTTGGTGAAC |
| Trichoderma harzianum03 | (none) | ----------CAAGGTCTCCGTTGGTGAAC |
| Trichoderma harzianum04 | (none) | ----------CAAGGTCTCCGTTGGTGAAC |
| Trichoderma harzianum05 | (none) | ------------------------------ |
| Trichoderma harzianum06 | (none) | ------GTAACAAGGTCTCCGTTGGTGAAC |
| Trichoderma harzianum07 | (none) | ----------CAAGGTCTCCGTTGGTGAAC |
| Trichoderma harzianum08 | (none) | ------GT-ACAAGGTCTCCGTTGGTGAAC |
| Trichoderma harzianum09 | (none) | --------------GTCT-CGGTGGTG-AC |
| Trichoderma harzianum10 | (none) | ------GTAACAAGGTCTCCGTTGGTGAAC |
| Trichoderma helicum | (none) | ------------------------------ |
| Hypomyces | (none) | ----------------------------AA |
| Trichoderma intricatum | (none) | ------------------------------ |
| Trichoderma koningii | (none) | GAAGTCGTAACAAGGTCTCCGTTGGTGAAC |
| Trichoderma koningiopsis | (none) | ------------------------------ |
| Hypocrea leucopus | (none) | ------------------------------ |
| Trichoderma lieckfeldtiae | (none) | -----------AAGGTCTCCGTTGGTGAAC |
| Trichoderma longibrachiatum | (none) | ------------------------------ |
| Trichoderma longipile | (none) | AAAAGTCGTACAAGGTCTCCGTTGGTGAAC |
| Hypocrea lutea | (none) | --------TACAAGGTCTCCGTTGGTGA-- |
| Trichoderma martiale | (none) | ------------------------------ |
| Hypocrea megalocitrina | (none) | ------------------------------ |
| Trichoderma melanomagnum | (none) | -----------------------------C |
| Hypocrea microcitrina | (none) | -------------GGTCTCCGTTGGTGAAC |
| Trichoderma minutisporum | (none) | ------------------------------ |
| Hypocrea moravica | (none) | ------------------------------ |
| Hypocrea neorufa | (none) | -AAGTCGTAACAAGGTCTCCGTTGGTGAAC |
| Hypocrea nigrovirens | (none) | ----------------------AGGTGAAC |
| Trichoderma novaezelandiae | (none) | ------------------------------ |
| Hypocrea nybergiana | (none) | ------------------------------ |
| Trichoderma oblongisporum | (none) | ------------------------------ |
| Trichoderma ovalisporum01 | (none) | ------------------------------ |
| Trichoderma ovalisporum02 | (none) | ----------------------GTTGGTGA |
| Trichoderma pachybasioides | (none) | ------------------------------ |
| Trichoderma parapiluliferum | (none) | ------------------------------ |
| Trichoderma parareseei | (none) | ------------------------------ |
| Hypocrea parepimyces | (none) | ------------------------------ |
| Trichoderma parestonicum | (none) | ------------------------------ |
| Hypocrea parmastoi | (none) | ------------------------------ |
| Hypocrea patella | (none) | GAAGTCGTAACAAGGTCTCCGTTGGTGAAC |
| Trichoderma paucisporum | (none) | -----------------TCCGTAGGTGAAC |
| Trichoderma petersenii | (none) | ------------------------------ |
| Hypocrea phyllostachydis | (none) | -----CGTAACAAGGTCTCCGTTGGTGAAC |
| Hypocrea pillulifera | (none) | GAAGTCGTAACAAGGTCTCCGTTGGTGAAC |
| Hypocrea placentula | (none) | ------------------------------ |
| Trichoderma pleuroticola | (none) | AAAATCGTAACAAGGTCTCCGTTGGTGAAC |
| Trichoderma pleurotum | (none) | ----TCGTAACAAGGTCTCCGTTGGTGAAC |
| Hypocrea protopulvinata | (none) | ------------------------------ |
| Trichoderma protrudens | (none) | ------------------------------ |
| Trichoderma pseudokoningii | (none) | ------------------------------ |
| Hypocrea pseudostraminea | (none) | ------------------------------ |
| Hypocrea psychrophila | (none) | -----------------------------C |
| Trichoderma pubescens | (none) | ------------------------------ |
| Hypocrea pulvinata | (none) | -----------AAGGTCTCCGTTGGTGAAC |
| Trichoderma reesei | (none) | GAAGTCGTAACAAGGTCTCCGTTGGTGAAC |
| Hypocrea rodmanii | (none) | ---------ACAAGGTCTCCGTTGGTGAAC |
| Trichoderma rogersonii | (none) | ------------------------------ |
| Trichoderma rossicum | (none) | ------GTAACAAGGTCT-CGTTGGTG-AC |
| Trichoderma saturnisporum | (none) | GAAGTCGTAACAAGGTCTCCGTTGGTGAAC |
| Hypocrea semiorbis | (none) | -------------------GTAGGTGAA?? |
| Hypocrea seppoi | (none) | ------------------------------ |
| Trichoderma sinuosum | (none) | -------------------CCGAGGTGAAC |
| Sphaerostilbella | (none) | ------------------CCGTAGGTGAAC |
| Hypocrea spinulosa | (none) | ------------------------------ |
| Trichoderma spirale01 | (none) | -------------------?GTAGGTGAAC |
| Trichoderma spirale02 | (none) | ------------------------------ |
| Trichoderma spirale03 | (none) | ------------------------------ |
| Trichoderma stilbohypoxyli | (none) | GAAGTCGTAACAAGGTCTCCGTTGGTGAAC |
| Hypocrea straminella | (none) | ------------------------------ |
| Trichoderma strictipile | (none) | -----------------------------C |
| Trichoderma strigosum | (none) | ------GTAACAAGGTCTCCGTTGGTGAAC |
| Trichoderma stromaticum | (none) | AAAGTCGTAACAAGGTCTCCGTTGGTGAAC |
| Hypocrea subalpina | (none) | ------------------------------ |
| Hypocrea sulawesensis | (none) | ---------------------------AAC |
| Hypocrea sulfurea | (none) | -----------------------------C |
| Trichoderma surrotundum | (none) | -----------------CCGTAGGTGGAAC |
| Hypocrea tawa | (none) | ------GTAACAAGGTCTCCGTTGGTGAAC |
| Trichoderma thailandicum | (none) | ------------------------------ |
| Trichoderma thelephoricola | (none) | -----------------------GGTGAAC |
| Trichoderma theobromicola | (none) | ------------------------------ |
| Trichoderma tomentosum | (none) | ------------------------------ |
| Trichoderma turrialbense | (none) | ------GTAACAAGGTCTCCGTTGGTGAAC |
| Trichoderma velutinum | (none) | ------------------------------ |
| Trichoderma victoriensis | (none) | ------------------------------ |
| Trichoderma virens | (none) | ------------------------------ |
| Trichoderma virescentiflava | (none) | ------------------------------ |
| Trichoderma viride | (none) | GAAGTCGTAACAAGGTCTCCGTTGGTGAAC |
| Trichoderma viridescens | (none) | GAAGTCGTAACAAGGTCTCCGTTGGTGAAC |
| Hypocrea voglmayrii | (none) | ------------------------------ |
Columns
None of the columns has a description.
