@ARTICLE{TreeBASE2Ref18817,
author = {Elizabeth Hill Zacharias and Bruce G. Baldwin},
title = {A Molecular Phylogeny of North American Atripliceae (Chenopodiaceae), with Implications for Floral and Photosynthetic Pathway Evolution},
year = {2010},
keywords = {Atriplex, C4 photosynthesis, Endolepis, Extriplex, Grayia, Proatriplex, Stutzia, Zuckia},
doi = {},
url = {http://},
pmid = {},
journal = {Systematic Botany},
volume = {},
number = {},
pages = {},
abstract = {A phylogenetic investigation of American Atripliceae (Chenopodiaceae) was conducted to examine evolutionary patterns and ecophysiological change in the North American lineages. Molecular phylogenetic analyses including representatives of all American genera of Atripliceae and data from 18S-26S nuclear ribosomal (ITS, ETS) and chloroplast (3?trnK intron) DNA sequences suggest that neither Atriplex, as traditionally recognized, nor the North American members of Atriplex constitute a monophyletic group. Congruence between well-supported nuclear and chloroplast clades and results of expanded leaf anatomical and isotopic analyses indicate that American taxa belong to two distantly related lineages with different photosynthetic pathways; only one shift from C3 to C4 photosynthesis is required to explain photosynthetic pathway evolution in sampled lineages of Atripliceae. Conservatism in photosynthetic pathway evolution in the tribe is exemplified by the endemic, C3 North American Atriplex taxa, which are nested among other genera (e.g., Grayia, Holmbergia, Zuckia) within a robust C3 clade. One North American C3 genus, Suckleya, often included within Atripliceae should be excluded from the tribe. A previous hypothesis of variation in photosynthetic pathway within Atriplex phyllostegia sensu H. M. Hall and Clem. is rejected. A revised taxonomy employing only monophyletic groups reflects this new understanding of relationships within the tribe. Extriplex includes E. californica (comb. nov.) and E. joaquinana (comb. nov.) and has not been recognized as a natural group by previous authors. Stutzia is proposed to replace the name Endolepis Torr. (1860), a later homonym of Endolepis Schleid. (1846), and includes S. covillei (comb. nov.) and S. dioica (comb. nov.). Grayia (G. plummeri, comb. nov., and G. arizonica, comb. nov.) is expanded to include Zuckia. Recognition of Proatriplex as distinct from Atriplex is supported. Holmbergia is retained in Atripliceae. The improved phylogenetic understanding of Atripliceae should allow for more meaningful comparative studies of physiological and other functional adaptations of Atriplex, especially in North America.}
}
Matrix 5163 of Study 10328

Citation title:
"A Molecular Phylogeny of North American Atripliceae (Chenopodiaceae), with Implications for Floral and Photosynthetic Pathway Evolution".

Study name:
"A Molecular Phylogeny of North American Atripliceae (Chenopodiaceae), with Implications for Floral and Photosynthetic Pathway Evolution".

This study is part of submission 10318
(Status: Published).
Matrices
Title: Zacharias American Atripliceae Alignment
Rows
Taxon Label |
Row Segments |
Characters 1?–30 |
Chenopodium album |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACCAGAGA |
Chenopodium murale |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACCAGAGA |
Atriplex pleiantha |
(none)
|
TCGAAACCTGCCTAGCAGAGTGACCAGAGA |
Atriplex suckleyi2 H95 UC |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACCAGAGA |
Atriplex covillei1 811 |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACCAGAGA |
Atriplex covillei2 953 |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACCAGAGA |
Holmbergia tweedii1 H89 |
(none)
|
TCGAAACCTGCCCAGCAGAGCAACCAGAGA |
Holmbergia tweedii2 H17 |
(none)
|
TCGAAACCTGCCCAGCAGAGCAACCAGAGA |
Grayia spinosa1 566 |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACCAGAGA |
Grayia spinosa2 1019 |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACCAGAGA |
Zuckia brandegeei brandegeei H38 |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACCAGAGA |
Zuckia brandegeei arizonica2 H78 9115 |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACCAGAGA |
Zuckia brandegeei plummeri |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACCAGAGA |
Atriplex californica3 1025 |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACCAGAGA |
Atriplex joaquiniana2 306 |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACCAGAGA |
Atriplex joaquiniana1 BE12 |
(none)
|
?CGAAACCTGCCCAGCAGAGCGACCAGAGA |
Atriplex hortensis1 667 |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACCAGAGA |
Atriplex prostrata2 309 |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACCAGAGA |
Atriplex prostrata1 204 |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACCAGAGA |
Atriplex rosea |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACCAGAGA |
Atriplex patula |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACCAGAGA |
Atriplex leucoclada |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACCAGAGA |
Atriplex amnicola |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACC{AT}G |
Atriplex suberecta2 HF9 |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACCAGAGA |
Atriplex suberecta1 JeGr8 |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACCAGAGA |
Atriplex cinerea |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACCAGAGA |
Atriplex rusbyi |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACCAGAGA |
Atriplex patagonica |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACCAGAGA |
Atriplex peruviana |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACCAGAGA |
Atriplex seren seren |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACCAGAGA |
Atriplex phyllostegia1 H84 |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACCAGAGA |
Atriplex phyllostegia2 992 |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACCAGAGA |
Atriplex watsonii |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACCAGAGA |
Atriplex lentiformis2 520 |
(none)
|
TCGAAACCTGCCCAGCAGAGCGACCAGAGA |
Columns
None of the columns has a description.