Matrix 42446 of Study 21486
Matrices
Title: Portunoidea 163 taxa concatenated alignment
Description: 163 taxa, concatenated partial 16S rRNA +tRNA-leu+NADH1, CO1, 28S rRNA, and H3 sequence data, alignment 3313 bps
Rows
Taxon Label | Row Segments | Characters 1?–30 |
---|---|---|
Arenaeus cribrarius OTU047 | (none) | GCTAGAGGATATTTATAGTCTAGCCTGCTC |
Arenaeus mexicanus OTU048 | (none) | GCTAGAGGGTATTTATAGTCTAGCCTGCTC |
Atoportunus gustavi OTU035 | (none) | GCT-GAGGATATTAATAGTCTAGCCTGCTC |
Bathynectes longispina OTU021 | (none) | -----------------GTCTGGCCTGCTC |
Bathynectes maravigna OTU022 | (none) | GCT-GAAGTTATTAATAGTCTGGCCTGCTC |
Benthochascon hemingi OTU011 | (none) | GCT-GGAGATATTAATAGTCTGGCCTGCTC |
Callinectes marginatus OTU049 | (none) | ------------------TCTAGCCTGCTC |
Callinectes ornatus OTU050 | (none) | ------------------------CTGCTC |
Callinectes sapidus OTU051 | (none) | GCT-GAAATTGTTTATAGTCTAGCCTGCTC |
Cancer pagurus OTU001 | (none) | GCT-GAAATAATAAATAGTCTAGCCTGCTC |
Caphyra bedoti OTU091 | (none) | GTTAGAAACTATTTATAGTCTAGCCTGCTC |
Caphyra cf fulva OTU093 | (none) | GCTAGAAATTATTTATAGTCTAGCCTGCTC |
Caphyra loevis OTU092 | (none) | GTTAGAAAATATTTATAGTCTAGCCTGCTC |
Caphyra sp A OTU094 | (none) | ------------------------------ |
Caphyra tridens OTU096 | (none) | ------------------TCTAGCCTGCTC |
Caphyra yookadai OTU097 | (none) | GTTAGAAACTATTTATAGTCTGACCTGCTC |
Carcinus maenas OTU007 | (none) | GCT-GGAGTTATTAATAGTCTGGCCTGCTC |
Carpilius convexus OTU002 | (none) | GCT-GAAGGTGTTTATAGTCTAGCCTGCTC |
Carupa ohashii OTU036 | (none) | GCTAGAAGATGTTGATAGTCTAGCCTGCTC |
Carupa tenuipes var A OTU037 | (none) | GCT-GAAGTTATTTATAGTCTAGCCTGCTC |
Carupa tenuipes var B OTU038 | (none) | -------------------CTAGCCTGCTC |
Catoptrus aff nitidus OTU040 | (none) | --------------------------GCTC |
Catoptrus cf. nitidus OTU039 | (none) | GCT-GAAGATATAAATAGTCTAGCCTGCTC |
Chaceon granulatus OTU012 | (none) | GCT-GAAGGTATTAATAGTCTGGCCTGCTC |
Charybdis acuta OTU098 | (none) | GCTAG-AGTTGTTTATAGTCTAGCCTGCTC |
Charybdis anisodon OTU099 | (none) | ------------------------------ |
Charybdis annulata OTU100 | (none) | GCTAGAGATTATTTATAGTCTAGCCTGCTC |
Charybdis bimaculata OTU101 | (none) | GCTAG-AGTTATTTATAGTCTAGCCTGCTC |
Charybdis callianassa OTU102 | (none) | ------------------------------ |
Charybdis feriata OTU103 | (none) | ------------------------------ |
Charybdis hellerii OTU104 | (none) | ------------------------------ |
Charybdis japonica OTU106 | (none) | GCTAGAGATTATTTATAGTCTAGCCTGCTC |
Charybdis longicollis OTU107 | (none) | GCTAGAGATTATTTATAGTCTAGCCTGCTC |
Charybdis lucifera OTU108 | (none) | ------------------------------ |
Charybdis natator OTU109 | (none) | ------------------------------ |
Charybdis orientalis OTU111 | (none) | ---AGAGATTATTTATAGTCTAGCCTGCTC |
Charybdis rathbuni OTU113 | (none) | ------------------TCTAGCCTGCTC |
Charybdis sagamiensis OTU112 | (none) | GCTAGAAACTATTTATAGTCTAGCCTGCTC |
Charybdis variegata OTU114 | (none) | GCTAGAGATTATTTATAGTCTAGCCTGCTC |
Coelocarcinus aff foliatus OTU009 | (none) | CTT-GAAGTTATGGGTAATCTGGCCTGCTC |
Coelocarcinus foliatus OTU010 | (none) | ------------------TCTGGCCTGCTC |
Corystes cassivelaunus OTU003 | (none) | GCT-GAAGGTGTTTATAGTCTGATCTGCTC |
Cronius edwardsi OTU115 | (none) | GCTAGATAATATTTATAGTCTAGCCTGCTC |
Cronius ruber OTU116 | (none) | GCT-GATAATATTTATAGTCTAGCCTGCTC |
Daldorfia horrida OTU005 | (none) | GCT-GAAGATATTAACAGTCTAGCCTGCTC |
Etisus utilis OTU006 | (none) | ------------------------------ |
Euphylax robustus OTU044 | (none) | GCTAGAAGATGTTTATAGTCTAGCCTGCTC |
Geryon longipes OTU013 | (none) | GCT-GAAGGTATTAATAGTCTGGCCTGCTC |
Gonioinfradens paucidentatus OTU117 | (none) | ------------------TCTAGCCTGCTC |
Goniosupradens acutifrons OTU118 | (none) | ------------------------------ |
Goniosupradens erythrodactylus OTU119 | (none) | GCTAGAATATATTTATAGTCTAGCCTGCTC |
Goniosupradens hawaiensis OTU120 | (none) | ----------------AGTCTAGCCTGCTC |
Goniosupradens obtusifrons OTU121 | (none) | ----------------AGTCTAGCCTGCTC |
Laleonectes nipponensis OTU052 | (none) | -----------------GTCTAGCCTGCTC |
Libystes edwardsii OTU041 | (none) | GCT-GAAGATATTCATAGTCTAACCTGCTC |
Libystes nitidus OTU042 | (none) | GCT-GGAGATATAAATAGTCTAGCCTGCTC |
Liocarcinus corrugatus OTU023 | (none) | GCT-GGAGTTATTTATAGTCTGGCCTGCTC |
Liocarcinus depurator OTU024 | (none) | GCT-GAAGTTATTAATAGTCTGGCCTGCTC |
Liocarcinus holsatus OTU025 | (none) | GCT-GAAGTTATTAATAGTCTGGCCTGCTC |
Liocarcinus maculatus OTU026 | (none) | ------------------------------ |
Liocarcinus marmoreus OTU027 | (none) | GCT-GGAGTTATTAATAGTCTGGCCTGCTC |
Liocarcinus navigator OTU028 | (none) | GCT-GGAGTTATTAATAGTCTGGCCTGCTC |
Liocarcinus vernalis OTU029 | (none) | GCT-GAAGTTATTAATAGTCTGGCCTGCTC |
Lissocarcinus arkati OTU122 | (none) | ------------------------CTGCTC |
Lissocarcinus holothuricola OTU123 | (none) | ------------------------------ |
Lissocarcinus laevis OTU124 | (none) | GCTAGAAAGTGCTTATAGTCTAGCCTGCTC |
Lissocarcinus orbicularis OTU125 | (none) | -------------------CTAGCCTGCTC |
Lissocarcinus polybiodes OTU126 | (none) | GTTAGAAAATGCTTATAGTCTAACCTGCTC |
Lupella forceps OTU053 | (none) | GCTAGGGGTTATTTATAGTCTAGCCTGCTC |
Lupocyclus philippinensis OTU054 | (none) | GCT-GAAGGTGCATATAGTCTAGCCTGCTC |
Lupocyclus quinquedentatus OTU055 | (none) | GCT-GAGGATATTTATAGTCTAGCCTGCTC |
Macropipus tuberculatus OTU030 | (none) | GCT-GAAGTTGTTAATAGTCTGGCCTGCTC |
Menippe rumphii OTU004 | (none) | GTT-GAAGATATAAATAGTCTGGCCTGCTC |
Necora puber OTU031 | (none) | GCTAGGAGATATTAATAGTCTGGCCTGCTC |
Ovalipes iridescens OTU015 | (none) | GCT-GGAGGTATTAATAGTCTGACCTGCTC |
Ovalipes punctatus OTU016 | (none) | ------------------------------ |
Ovalipes stephensoni floridanus OTU017 | (none) | GCT-GGAGGTATTTATAGTCTAGCCTGCTC |
Ovalipes trimaculatus OTU018 | (none) | GCT-GGAGGTATTAATAGTCTGACCTGCTC |
Parathranites orientalis OTU032 | (none) | ------------------------------ |
Pirimela denticulata OTU019 | (none) | GCT-GAAGTTATTTATAGTCTGGCCTGCTC |
Podophthalmus vigil OTU046 | (none) | ----------------------GCCTGCTC |
Polybius henslowii OTU033 | (none) | GCT-GAAGTTATTAATAGTCTGGCCTGCTC |
Portumnus latipes OTU008 | (none) | GCT-GAAGCTATTAATAGTCTGGCCTGCTC |
Portunus Achelous asper OTU057 | (none) | GTT-GAGTTTATTTGTAGTCTAGCCTGCTC |
Portunus Achelous depressifrons OTU058 | (none) | GCTAGAGGTTGTTAATAGTCTAGCCTGCTC |
Portunus Achelous floridanus OTU059 | (none) | GCT-GAATGTATTTATAGTCTAGCCTGCTC |
Portunus Achelous gibbesii OTU060 | (none) | GCT-GAGGTTGTTTGTAGTATAGCCTGCTC |
Portunus Achelous ordwayi OTU061 | (none) | GCTAGGGGTTATTAATAGTCTAGCCTGCTC |
Portunus Achelous rufiremus OTU062 | (none) | GCTTGTAGTTATTTGTAGTTTAACCTGCTC |
Portunus Achelous sebae OTU063 | (none) | GCTAGGTGTTATTAATAGTCTAGCCTGCTC |
Portunus Achelous spinicarpus OTU064 | (none) | GCTAGAGGTTATTTGTAGTCTAGCCTGCTC |
Portunus Achelous spinimanus OTU065 | (none) | -----------------GTCTAGCCTGCTC |
Portunus Achelous tumidulus OTU066 | (none) | GCTAGGGAATATTTGTAGTCTAGCCTGCTC |
Portunus anceps OTU074 | (none) | GCT-GAATGTATTTATAGTCTAGCCTGCTC |
Portunus Cycloachelous granulatus OTU067 | (none) | GCTAGATGATAATAATAGTCTAGCCTGCTC |
Portunus hastatus OTU075 | (none) | GCTAGTATGTATTAATAGTCTAACCTGCTC |
Portunus inaequalis OTU076 | (none) | GCTAGTATATATTGATAGTCTAACCTGCTC |
Portunus Lupocycloporus gracilimanus OTU069 | (none) | ------------------------------ |
Portunus Monomia petreus OTU072 | (none) | GCTAGGTGATATTTATAGTCTAGCCTGCTC |
Portunus pelagicus OTU077 | (none) | GCTAGAATTTATTTATAGTCTAGCCTGCTC |
Portunus sanguinolentus hawaiiensis OTU078 | (none) | -----------------GTCTAGCCTGCTC |
Portunus sayi OTU079 | (none) | GTT-GATAATATTTATAGTCTAGCCTGCTC |
Portunus trituberculatus OTU080 | (none) | GCT-GAGGGTATTTATAGTCTAGCCTGCTC |
Portunus ventralis OTU081 | (none) | ------------------------------ |
Portunus Xiphonectes aff longispinosus OTU084 | (none) | -----------------GTCTGGCCTGCTC |
Portunus Xiphonectes arabicus OTU082 | (none) | -----------------GTCTAGCCTGCTC |
Portunus Xiphonectes longispinosus OTU085 | (none) | -----------------GTCTGACCTGCTC |
Raymanninus schmitti OTU014 | (none) | ------------------------------ |
Richerellus moosai OTU043 | (none) | GCTAGAAGATATTAATAGTCTAGCCTGCTC |
Scylla olivacea OTU087 | (none) | GCT-GAAGGTGTTTATAGTCTAGCCTGCTC |
Scylla paramamosain OTU088 | (none) | GCT-GAGGTTATGTATAGTCTAGCCTGCTC |
Scylla serrata OTU089 | (none) | GCT-GAGGTTATTTATAGTCTAGCCTGCTC |
Scylla tranquebarica OTU090 | (none) | GCT-GAAATTATATATAGTCTAGCCTGCTC |
Sirpus zariquieyi OTU020 | (none) | GCT-GGAGTTATAAGTAGTCTGACCTGCTC |
Thalamita admete OTU127 | (none) | GCTAGAAAATATTTATAGTCTAGCCTGCTC |
Thalamita aff admete OTU128 | (none) | ----------------AGTCTAGCCTGCTC |
Thalamita aff kukenthali OTU144 | (none) | ------------TTATAGTCTA-CCTGCTC |
Thalamita aff spinifera OTU162 | (none) | GCTAGAAAATTTTTATAGTCTAGCCTGCTC |
Thalamita auauensis OTU129 | (none) | ----------------AGTCTAGCCTGCTC |
Thalamita bevisi OTU130 | (none) | -----------------GTCTAGCCTGCTC |
Thalamita bouvieri OTU131 | (none) | ------------------------------ |
Thalamita cf gatavakensis sp A OTU138 | (none) | ------------------------------ |
Thalamita cf gatavakensis sp B OTU137 | (none) | ----------------AGTCTAGCCTGCTC |
Thalamita chaptalii OTU132 | (none) | -----------------GTCTAGCCTGCTC |
Thalamita gloriensis OTU151 | (none) | ------------------------------ |
Thalamita granosimana OTU140 | (none) | ------------------------------ |
Thalamita integra OTU141 | (none) | -----------------GTCTAGCCTGCTC |
Thalamita kagosimensis OTU142 | (none) | GTTAGAAAATGTTTATAGTCTAGCCTGCTC |
Thalamita malaccensis OTU145 | (none) | GTTAGGAAATATTTATAGTCTAGCCTGCTC |
Thalamita mitsiensis OTU146 | (none) | ------------------TCTAGCCTGCTC |
Thalamita oculea OTU147 | (none) | GTTAGAAAATGTTTATAGTCTAGCCTGCTC |
Thalamita parvidens OTU149 | (none) | ----------------AGTCTAGCCTGCTC |
Thalamita philippinensis OTU143 | (none) | -----------------GTCTAACCTGCTC |
Thalamita picta OTU150 | (none) | -----------------GTCTAGCCTGCTC |
Thalamita pseudoculea OTU153 | (none) | -----------------GTCTAGCCTGCTC |
Thalamita pseudopoissoni OTU148 | (none) | -----------------GTCTAGCCTGCTC |
Thalamita quadrilobata OTU155 | (none) | -----------------GTCTAGCCTGCTC |
Thalamita savignyi OTU158 | (none) | GCTAGAAAATGTTTATAGTCTAGCCTGCTC |
Thalamita seurati OTU159 | (none) | ----------------AGTCTAGCCTGCTC |
Thalamita sima OTU160 | (none) | -----------------GTCTAGCCTGCTC |
Thalamita stephensoni OTU164 | (none) | -----------------GTCTAGCCTGCTC |
Thalamitoides quadridens OTU165 | (none) | ------------------------------ |
Thalamitoides spinigera OTU166 | (none) | GCTAGAAAATATTTATAGTCTAGCCTGCTC |
Thalamitoides tridens OTU167 | (none) | GTTAGAAAATATTTATAGTCTAGCCTGCTC |
Thalamonyx gracilipes OTU139 | (none) | GCTAGAAAATGTTTATAGTCTAGCCTGCTC |
Thia scutellata OTU034 | (none) | GCT-GGAGGTATTATTAGTCTGGCCTGCTC |
Thranita aff rubridens OTU157 | (none) | -------------------------TGCTC |
Thranitaa rubridens OTU156 | (none) | -----------------GTCTAGCCTGCTC |
Thranita coeruleipes OTU133 | (none) | -----------------GTCTAGCCTGCTC |
Thranita crenata OTU134 | (none) | -----------------GTCTAGCCTGCTC |
Thranita danae OTU135 | (none) | ------------------------------ |
Thranita foresti OTU136 | (none) | ----------------AGTCTAGCCTGCTC |
Thranita prymna OTU152 | (none) | ------------------TCTAGCCTGCTC |
Thranita pseudopelsarti OTU154 | (none) | ------------------TCTAGCCTGCTC |
Thranita spinicarpa OTU161 | (none) | -CTAGAAAATGTTTATAGTCTAGCCTGCTC |
Thranita spinimana OTU163 | (none) | GCTAGAAAATGTTTATAGTCTAGCCTGCTC |
Trierarchus cf cooperi sp A OTU168 | (none) | ----------------AGTCTAGCCTGCTC |
Trierarchus cf cooperi sp B OTU169 | (none) | -------------------CTAGCCTGCTC |
Trierarchus rotundifrons OTU170 | (none) | ----------------AGTCTAGCCTGCTC |
Trierarchus squamosus OTU174 | (none) | --ATGAAAATATTTATAGTCTAGCCTGCTC |
Trierarchus woodmasoni OTU171 | (none) | GCTAGAAAGTGTTTATAGTCTAGCCTGCTC |
Zygita longifrons OTU172 | (none) | GCTAGGAAATATTTATAGTCTAGCCTGCTC |
Zygita murinae OTU173 | (none) | GCTAGAAACTATTTATAGTCTAGCCTGCTC |
Columns
None of the columns has a description.