@ARTICLE{TreeBASE2Ref18595,
author = {Aaron H. Kennedy and L. E. Watson},
title = {Species Delimitations and Phylogenetic Relationships within in the Fully Myco-heterotrophic Hexalectris (Orchidaceae)},
year = {2010},
keywords = {},
doi = {10.1600/036364410790862489},
url = {},
pmid = {},
journal = {Systematic Botany},
volume = {35},
number = {1},
pages = {64--76},
abstract = {Phylogenetic analyses were conducted using six plastid markers and the ITS from 43 accessions representing all eight currently recognized Hexalectris species with the goals of testing species circumscriptions and determining interspecific relationships. The monophyly of H. warnockii, H. grandiflora, H. brevicaulis, and H. nitida, plus the H. spicata species complex, are strongly supported. The remaining species are not monophyletic, prompting the recircumscription of H. spicata s.l. as H. spicata s.s. and H. arizonica, H. revoluta s.l. as H. revoluta s.s. and H. colemanii, and H. fallax as a synonym of H. parviflora. Four major morphologically distinct lineages exist within the genus: H. warnockii, H. grandiflora, H. brevicaulis, H. spicata species complex. Within the latter, only H. spicata s.s. and H. nitida are strongly supported as sister species among all trees and the positions of H. revoluta s.s. and H. parviflora remain unresolved due to incongruence in the plastid trees when psbA is included or excluded from analyses. Incongruence between the plastid and ITS topologies was restricted to the positions of H. colemanii and H. arizonica, which suggests that either one or both of these species are of hybrid origin or that the ITS topology has been influenced by incomplete lineage sorting.}
}
Matrix 4446 of Study 10104

Citation title:
"Species Delimitations and Phylogenetic Relationships within in the Fully Myco-heterotrophic Hexalectris (Orchidaceae)".

This study was previously identified under the legacy study ID S2445
(Status: Published).
Matrices
Title: ITS with INDELS coded
Description: Legacy TreeBASE Matrix ID = M4654
Rows
Taxon Label |
Row Segments |
Characters 1?–30 |
Bletia roezlii 32 |
(none)
|
CTAGGTGAACCTGCGGAAGGATCATTGTCG |
Hexalectris warnockii 265 |
(none)
|
GTAGGTGAACCTGCGGAAGGATCATTGTCG |
Hexalectris warnockii 67 |
(none)
|
????????????????????????TTGTCG |
Hexalectris brevicaulis 38 |
(none)
|
??????????????????????CATTGTCG |
Hexalectris grandiflora DQ864656 |
(none)
|
???????????????????????????TCG |
Hexalectris grandiflora 268 |
(none)
|
GTAGGTGAACCTGCGGAAGGATCATTGTCG |
Hexalectris grandiflora 46 |
(none)
|
GTAGGTGAACCTGCGGAAGGATCATTGTCG |
Hexalectris grandiflora 273 |
(none)
|
GTAGGTGAACCTGCGGAAGGATCATTGTCG |
Hexalectris nitida 270 |
(none)
|
GTAGGTGAACCTGCGGAAGGATCATTGTCG |
Hexalectris nitida 48 |
(none)
|
GTAGGTGAACCTGCGGAAGGATCATTGTCG |
Hexalectris nitida 66 |
(none)
|
GTAGGTGAACCTGCGGAAGGATCATTGTCG |
Hexalectris fallax 80 |
(none)
|
??????????????????????CATTGTCG |
Hexalectris parviflora 85 |
(none)
|
??????????????????????CATTGTCG |
Hexalectris revoluta var colemanii 166 |
(none)
|
??????????????????????CATTGTCG |
Hexalectris revoluta var colemanii 162 |
(none)
|
?????????????????????TCATTGTCG |
Hexalectris revoluta var revoluta 51 |
(none)
|
GTAGGTGAACCTGCGGAAGGATCATTGTCG |
Hexalectris spicata var arizonica 47 |
(none)
|
GTAGGTGAACCTGCGGAAGGATCATTGTCG |
Hexalectris spicata var spicata 266 |
(none)
|
????????????????????????TTGTCG |
Hexalectris spicata var spicata 264 |
(none)
|
??????????????????????????GTCG |
Columns
None of the columns has a description.