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Citation
Taxa
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Analyses
Matrix 6996 of Study 10968
Citation title: "Are Transposable Element Insertions Homoplasy Free? An Examination Using the Avian Tree of Life".
Study name: "Are Transposable Element Insertions Homoplasy Free? An Examination Using the Avian Tree of Life".
This study is part of submission 10958
(Status: Published).
Matrices
Title: Avian Tree of Life TE Matrix
Description: TE characters
Rows
| Taxon Label | Row Segments | Characters 1?–30 |
|---|---|---|
| Struthio camelus | (none) | 000000000000000000000000000000 |
| Rhea americana | (none) | 000000000000000000000000000000 |
| Nothoprocta perdicaria | (none) | 0000000000000000000000000000?? |
| Eudromia elegans | (none) | 000000000000000000000000000000 |
| Tinamus guttatus | (none) | 000000000000000000000000000000 |
| Crypturellus soui | (none) | ????0000??0??????0000000000000 |
| Apteryx australis | (none) | 000000000000000000000000000000 |
| Casuarius casuarius | (none) | 000000000000000000000000000000 |
| Dromaius novaehollandiae | (none) | 000000000000000000000000000000 |
| Chauna torquata | (none) | 00000000??00000000000000000000 |
| Anseranas semipalmata | (none) | 00000000??00000000000000000000 |
| Oxyura jamaicensis | (none) | 00000000??00000000000000000000 |
| Malacorhynchus membranaceus | (none) | 00000000??000000000000000000?? |
| Anser erythropus | (none) | 000000000000000000000000000000 |
| Biziura lobata | (none) | 00000000??00000000000000000000 |
| Aythya americana | (none) | 0000000000000000000000000000?? |
| Anas platyrhynchos | (none) | 000000000000000000000000000000 |
| Alectura lathami | (none) | 00000000??00001000000000000000 |
| Megapodius eremita | (none) | 00000000??00001000000000000000 |
| Crax alector | (none) | 000000000000000000000000000000 |
| Numida meleagris | (none) | 000000000000000000000000000000 |
| Colinus cristatus | (none) | 00000000??00000000000000000000 |
| Rollulus rouloul | (none) | 00000000??00000000000000000000 |
| Coturnix coturnix | (none) | 0000010000000000000000000000?? |
| Gallus gallus | (none) | 000100000000000000000000000000 |
| Phoenicopterus chilensis | (none) | 000000000000000000000000000000 |
| Podiceps auritus | (none) | 000000?????0100000000000000000 |
| Phaethon lepturus | (none) | 00000000??00000000000000000000 |
| Phaethon rubricauda | (none) | 00000000??00000000000000000000 |
| Pterocles namaqua | (none) | 00000000??00000000000000000000 |
| Syrrhaptes paradoxus | (none) | 00000000??00000000000000000000 |
| Mesitornis unicolor | (none) | 000000000000000000000000000000 |
| Monias benschi | (none) | 00000000??00000000000000000000 |
| Otidiphaps nobilis | (none) | 00000000??00000000001000000000 |
| Columbina passerina | (none) | 00000000??00000000001000000000 |
| Treron vernans | (none) | 000000000000000000001000000000 |
| Geotrygon montana | (none) | 00000000??00000000001000000000 |
| Columba livia | (none) | 000000000000000000001000000000 |
| Rhynochetos jubatus | (none) | 000000001000000000000000000000 |
| Eurypyga helias | (none) | 000000001000000000000000000000 |
| Steatornis caripensis | (none) | ????0000??000000000000000000?? |
| Nyctibius bracteatus | (none) | 00000000??00000000000000000000 |
| Nyctibius grandis | (none) | 00000000??0000000???0000000000 |
| Podargus strigoides | (none) | 000000000000000000000000000000 |
| Batrachostomus septimus | (none) | 00000000??000000?0000000000000 |
| Caprimulgus longirostris | (none) | 00000000000000000???????????00 |
| Eurostopodus macrotis | (none) | 00000000??0?????????????????00 |
| Aegotheles insignis | (none) | 00000000??00000000000000000000 |
| Colibri coruscans | (none) | 0000000000000000010000000000?? |
| Phaethornis griseogularis | (none) | ??????????000000000000000000?? |
| Hemiprocne mystacea | (none) | 00000000??00000000110000000000 |
| Streptoprocne zonaris | (none) | 000000000000000000010000000000 |
| Aerodramus vanikorensis | (none) | 00000000??00000000010000000000 |
| Opisthocomus hoazin | (none) | 00000000??00000000000000000000 |
| Eupodotis ruficrista | (none) | 00000000??0000000???????????00 |
| Ardeotis kori | (none) | 00000000??000000?0000000000000 |
| Geococcyx californianus | (none) | ????0000??00000000000000010000 |
| Crotophaga sulcirostris | (none) | 00000000??00000000000000010000 |
| Coua cristata | (none) | 00000000??00000000000000010000 |
| Centropus viridis | (none) | ????0000??00000000000000010000 |
| Cuculus canorus | (none) | 00000000??00010000000000010000 |
| Phaenicophaeus curvirostris | (none) | 000000?????001000???????????00 |
| Coccyzus americanus | (none) | 00000000??00010000000110010000 |
| Himantornis haematopus | (none) | ????0000??00000000000000000000 |
| Rallus limicola | (none) | 000000000000000000000000000000 |
| Sarothrura elegans | (none) | 00000000??00000000000000000000 |
| Heliornis fulica | (none) | ????0000??00000000000000000000 |
| Psophia crepitans | (none) | 0000000000000000000000000000?? |
| Grus canadensis | (none) | 00000000??00000000000000000000 |
| Aramus guarauna | (none) | 00000000??00000000000000000000 |
| Corythaeola cristata | (none) | ????0001??000000????????????00 |
| Tauraco erythrolophus | (none) | 000000000000000000000000000000 |
| Gavia immer | (none) | 00000000??000000000000000000?? |
| Eudyptula minor | (none) | 00000000000000000???????????00 |
| Oceanites oceanicus | (none) | 00000000??00000000000000000000 |
| Diomedea nigripes | (none) | 00000000??00000000000000000000 |
| Oceanodroma tethys | (none) | 00000000??00000000000000000000 |
| Pelecanoides urinatrix | (none) | 00000000??00000000000000000000 |
| Puffinus griseus | (none) | 00000000??00000000000000000000 |
| Ciconia ciconia | (none) | 000000000000000000000000000000 |
| Pelecanus occidentalis | (none) | 00000000??00000000000000000000 |
| Scopus umbretta | (none) | 00000000??00000000000000000000 |
| Balaeniceps rex | (none) | 00000000??000000000000000000?? |
| Eudocimus albus | (none) | 00000000??00000000000000000000 |
| Cochlearius cochlearius | (none) | 00000000??00000000000000000000 |
| Ardea herodias | (none) | 00000000??00000000000000000000 |
| Fregata magnificens | (none) | 000000000000000000000000000000 |
| Morus bassanus | (none) | 00000000??00000000000000000000 |
| Phalacrocorax carbo | (none) | 000000000000000000000000000000 |
| Anhinga anhinga | (none) | 000000000000000000000000000000 |
| Burhinus bistriatus | (none) | 00000000??00000000000000000000 |
| Haematopus ostralegus | (none) | 000000000000000000000000000000 |
| Charadrius vociferus | (none) | 00000000??00000000000000000000 |
| Phegornis mitchellii | (none) | 00000000??00000000000000000000 |
| Turnix sylvatica | (none) | ????1000??0000000???????????00 |
| Larus marinus | (none) | 00000000??00000000000000000000 |
| Dromas ardeola | (none) | ????????????????????????????00 |
| Arenaria interpres | (none) | 000000000000000000000001000000 |
| Rostratula benghalensis | (none) | 00000000??00000000000001000000 |
| Jacana jacana | (none) | 00000000??00000000000001000000 |
| Pedionomus torquatus | (none) | 00000000??00000000000001000000 |
| Thinocorus orbignyianus | (none) | 00000000??00000000000001000000 |
| Sarcoramphus papa | (none) | 00000000??00000000000000000000 |
| Cathartes aura | (none) | 00000000??00000000000000000000 |
| Sagittarius serpentarius | (none) | 00000000??00000000000000000000 |
| Pandion haliaetus | (none) | 000000000000000000000000000000 |
| Gampsonyx swainsonii | (none) | 00000000??00000000000000000000 |
| Buteo jamaicensis | (none) | 000000000000000000000000000000 |
| Colius colius | (none) | 000000000100000000000000000000 |
| Urocolius indicus | (none) | 00000000??00000000000000000000 |
| Phodilus badius | (none) | 00000000??00000000000000000010 |
| Tyto alba | (none) | 00000000??00000000000000000010 |
| Speotyto cunicularia | (none) | 000000000000000000000000000000 |
| Strix occidentalis | (none) | 00000000??00000000000000000000 |
| Leptosomus discolor | (none) | 00000000??00000000000000000000 |
| Trogon personatus | (none) | 0010000000000000000000000000?? |
| Pharomachrus auriceps | (none) | 00100000??00000000000000000000 |
| Phoeniculus purpureus | (none) | ????0000??00000000000000000001 |
| Upupa epops | (none) | 00000000??00000000000000000000 |
| Bucorvus abyssinicus | (none) | 00000000??00000000000000000000 |
| Tockus camurus | (none) | 00000000??00000000000000000000 |
| Bucco macrodactylus | (none) | 00000010??10000100000000000000 |
| Galbula albirostris | (none) | 00000010??10000100000000000000 |
| Capito niger | (none) | 00000000??00000000000000100000 |
| Megalaima virens | (none) | 00000000??000000????0000100000 |
| Indicator maculatus | (none) | 00000000??00000000000000100000 |
| Dryocopus pileatus | (none) | 000000000000000000000000100000 |
| Merops nubicus | (none) | 000000??????????0???00000000?? |
| Coracias caudata | (none) | 00000000??00000000000000000000 |
| Brachypteracias squamigera | (none) | 00000000??00000000000000000000 |
| Todus angustirostris | (none) | 00000000??0?????00000000000000 |
| Alcedo leucogaster | (none) | ????0000??01000000000000000000 |
| Momotus momota | (none) | 00000000??00000000000000000000 |
| Cariama cristata | (none) | 00000000??00000000000000000000 |
| Micrastur semitorquatus | (none) | 00000000??00000000000000000000 |
| Herpetotheres cachinnans | (none) | 00000000??00000000000000000000 |
| Daptrius ater | (none) | 00000000??00000000000000000000 |
| Falco mexicanus | (none) | 000000000000000000000000000000 |
| Cacatua sulphurea | (none) | 00000000??00000000000000000100 |
| Psittacus erithacus | (none) | 00000000??00000000000000000100 |
| Platycercus elegans | (none) | 00000000??0??????0000000000100 |
| Chalcopsitta cardinalis | (none) | 00000000??00000000000000000100 |
| Micropsitta finschii | (none) | 00000000??00000000000000000100 |
| Psittacula alexandri | (none) | 000000?????000000000????????00 |
| Alisterus scapularis | (none) | 00000000??00000000000000000100 |
| Acanthisitta chloris | (none) | ????0000??0000001???0000001000 |
| Sapayoa aenigma | (none) | 00000000??00000000000000001000 |
| Smithornis rufolateralis | (none) | 100000000000000000000000001000 |
| Pitta guajana | (none) | 000000?????0000000000000001000 |
| Pipra coronata | (none) | 00000000??00000000000000001000 |
| Tyrannus tyrannus | (none) | 00000000??00000000000000001000 |
| Mionectes macconnelli | (none) | 01000000??0?????????????????00 |
| Thamnophilus nigrocinereus | (none) | 00000000??0000000???0000001000 |
| Grallaria varia | (none) | 00000000??00000000000000001000 |
| Dendrocolaptes certhia | (none) | 00000000??00000000000000001000 |
| Scytalopus magellanicus | (none) | 00000000??00000000000000001000 |
| Menura novaehollandiae | (none) | 00000000??0??????00000000010?? |
| Climacteris erythrops | (none) | 00000000??00000000000000001000 |
| Malurus melanocephalus | (none) | 00000000??00000000000000001000 |
| Corvus corone | (none) | ????00000000000000000000001000 |
| Picathartes gymnocephalus | (none) | 00000000??00000000000000001000 |
| Bombycilla garrulus | (none) | 00000000??00000000000000001000 |
| Regulus calendula | (none) | 00000000??00000000000000001000 |
| Turdus falklandii | (none) | 00000000??0000000000????????00 |
| Sylvia nana | (none) | 00000000??00000000000000001000 |
| Fringilla montifringilla | (none) | 00000000??00000000000000001000 |
| Passer montanus | (none) | 00000000??00000000000000001000 |
| Ploceus cucullatus | (none) | ????0000??00000000000000001000 |
| Vidua chalybeata | (none) | 000000000000000000000000001000 |
Columns
| Column | Character Description |
|---|---|
| 1 | ALDOB-3 |
| 2 | ALDOB-3 |
| 3 | ALDOB-5 |
| 4 | ALDOB-5 |
| 5 | CLTC-6 |
| 6 | CLTC-6 |
| 7 | CLTC-7 |
| 8 | CLTC-7 |
| 9 | CLCTL1-7 |
| 10 | CLCTL1-7 |
| 11 | CRYAA-1 |
| 12 | EEF2-5 |
| 13 | EEF2-5 |
| 14 | EEF2-5 |
| 15 | EEF2-5 |
| 16 | EEF2-5 |
| 17 | EEF2-6 |
| 18 | EEF2-7 |
| 19 | EEF2-7 |
| 20 | EEF2-7 |
| 21 | EEF2-8 |
| 22 | EEF2-8 |
| 23 | EEF2-8 |
| 24 | EEF2-8 |
| 25 | EEF2-8 |
| 26 | EEF2-8 |
| 27 | EEF2-8 |
| 28 | EEF2-8 |
| 29 | FGB-5 |
| 30 | FGB-5 |
| 31 | FGB-7 |
| 32 | FGB-7 |
| 33 | FGB-7 |
| 34 | FGB-7 |
| 35 | GH1-2 |
| 36 | GH1-2 |
| 37 | GH1-2 |
| 38 | GH1-2 |
| 39 | GH1-2 |
| 40 | GH1-2 |
| 41 | GH1-2 |
| 42 | GH1-3 |
| 43 | GH1-3 |
| 44 | HMGN2-2 |
| 45 | HMGN2-3 |
| 46 | HMGN2-4 |
| 47 | HMGN2-4 |
| 48 | HMGN2-4 |
| 49 | HMGN2-4 |
| 50 | HMGN2-4 |
| 51 | HMGN2-5 |
| 52 | IRF2-2 |
| 53 | MB-1 |
| 54 | MB-1 |
| 55 | MUSK-3 |
| 56 | MUSK-3 |
| 57 | MYC-b |
| 58 | PCBD1-2 |
| 59 | PCBD1-2 |
| 60 | PCBD1-3 |
| 61 | PCBD1-3 |
| 62 | PCBD1-3 |
| 63 | PCBD1-3 |
| 64 | PCBD1-3 |
| 65 | TGFB2-5 |
| 66 | TGFB2-5 |
