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Matrix 2425 of Study 1141

About Citation title: "Candidatus Phytoplasma?, a taxon for the wall-less non-helical prokaryotes colonizing plant phloem and insects.".
About This study was previously identified under the legacy study ID S1048 (Status: Published).

Matrices

Title: All Phytoplasma Seq

Description: Legacy TreeBASE Matrix ID = M1787

Rows

Taxon Label Row Segments Characters 1?–30
Tomato big bug mycoplasma-like organism L33760  (none) ------------------------------
Sweet potato little leaf phytoplasma strain V4 AJ289193  (none) TTTGATCCTGGCTCAGGATTAACG--CT--
Sweet potato witches-broom mycoplasma-like organism L33770  (none) ------------------------------
Stylosanthes little leaf phytoplasma AJ289192  (none) TTAGATCCTGGCTCAGGATTAACG--CTGG
Strawberry lethal yellows phytoplasma AJ243045  (none) ------------------------------
Strawberry green petal phytoplasma AJ243044  (none) -------------------------GCTGG
Rubus stunt phytoplasma Y16395  (none) ------------------------------
Peach yellow leafroll phytoplasma Y16394  (none) -TTGATCCTGG-TCAGGATGAACG--C{AT
Phytoplasma sp strain LDG Y13912  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Peanut witches-broom mycoplasma-like organism L33765  (none) ------------------------------
Phytoplasma sp U89378  (none) ------------------------------
Phytoplasma sp strain StLL Y17055  (none) ------------------------------
Phytoplasma sp PinP AJ310849  (none) TTTGATCCTGGCTCAGGATGAACG--CTGG
Phormium yellow leaf phytoplasma rrnB U43570  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Phormium yellow leaf phytoplasma rrnA U43569  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Pigeon pea little leaf phytoplasma AJ289191  (none) TTTGATCCTGGCTCAGGATTAACG--CT-G
Pigeon pea witches-broom mycoplasma-like organism L33735  (none) ------------------------------
Phytoplasma sp Tomato Big Bud Australia Y08173  (none) --------------------------CTGG
Picris echiodes phyllody phytoplasma Y16393  (none) ------------TCAGGATGAACG--CTGG
Pear decline phytoplasma Y16392  (none) -TTTGATCCTAGTCAGGATGAACG--CTGG
Caribbean PPWB mycoplasma-like organism U18763  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Yucatan coconut lethal decline phytoplasma U18753  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Mycoplasma-like organism substrain ULW X68376  (none) TTTGATCCTTGGCTCAGGATTACG--CTGG
Mycoplasma-like organism substrain PPER X68374  (none) TTTGATCCTGGCTCAGGATGAACG--CTGG
Mycoplasma-like organism substrain AT X68375  (none) TTTGATCCTGGCTCAGGATGAACG--CTGG
Mycoplasma-like organism substrain ASHY X68339  (none) ------------------------------
Mycoplasma-like organism substrain ACLR X68338  (none) -----------CTCAGGATTAACCGCCTGG
Mycoplasma-like organism substrain AAY X68373  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Mycoplasma-like organism Italian clover phyllody X77482  (none) GTTTGATCTGGCTCAGGATGAACG--CTGG
Mycoplasma-like organism plum leptonecrosis X77372  (none) ------------------------------
Mycoplasma-like sp. M86340  (none) TTTGATCCTGGCTCA-GGATTAAC-GCTGG
Loofah witches-broom mycoplasma-like organism L33764  (none) ------------------------------
Knautia arvensis phyllody phytoplasma 23S Y18052  (none) ------------------------------
Italian alfalfa witches-broom phytoplasma Y16390  (none) ------------------------------
Group II phytoplasma D12580  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Elm yellows mycoplasma-like organism rDNA L33763  (none) ------------------------------
Picris echioides yellows phytoplasma Y16389  (none) ----------------------AACGCTGG
Clover yellow edge mycoplasma-like organism L33766  (none) ------------------------------
Clover phyllody mycoplasma-like organism L33762  (none) ------------------------------
Bindweed yellows phytoplasma Y16391  (none) TTTGATCCT-GCTCAGGATTAACG--CTGG
Alder yellows phytoplasma Y16387  (none) ---------------------ACG--CTGG
Aster yellows mycoplasma-like organism L33767  (none) ------------------------------
Ash yellows mycoplasma-like organism L33759  (none) ------------------------------
Mulberry dwarf phytoplasma AY075038  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Ziziphus jujube witches-broom phytoplasma AY072722  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
European stone fruit yellows phytoplasma AY029540  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Alder yellows phytoplasma AY028789  (none) ------------------------------
Bermuda grass white leaf phytoplasma AJ550986  (none) ------------------------------
Bermuda grass white leaf phytoplasma AJ550985  (none) ------------------------------
Candidatus Phytoplasma phoenicium AF515637  (none) ------------------------------
Sorghum grassy shoot phytoplasma variant II AF509325  (none) ------------------------------
Sorghum grassy shoot phytoplasma variant I AF509324  (none) ------------------------------
Cynodon white leaf phytoplasma AF509321  (none) ------------------------------
Aster yellows phytoplasma B AF503568  (none) ------------------------------
Chinaberry yellows phytoplasma strain CbY1 AF495882  (none) ------------------------------
Chinaberry yellows phytoplasma AF495657  (none) ------------------------------
Almond witches-broom phytoplasma strain AlmWB-N1 AF455041  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Almond witches-broom phytoplasma strain AlmWB-P1 AF455040  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Almond witches-broom phytoplasma strain AlmWB4 AF455039  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Almond witches-broom phytoplasma strain AlmWB3 AF455038  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Phytoplasma sp PY1 AF453328  (none) ------------------------------
Texas Phoenix palm phytoplasma AF434989  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Clover proliferation phytoplasma strain EY-IL 1 AF409070  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Clover proliferation phytoplasma strain EY-IL 2 AF409069  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Almond witches- broom phytoplasma strain AlmWB2 AF390137  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Almond witches- broom phytoplasma strain AlmWB1 AF390136  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Cirsium white leaf phytoplasma rrnB AF373106  (none) ------------------------------
Cirsium white leaf phytoplasma rrnA AF373105  (none) ------------------------------
Delion virescence phytoplasma rrnB AF370120  (none) --------------------AACG--CTGG
Delion virescence phytoplasma rrnA AF370119  (none) ---------------------ACG--CTGG
Florida Panus decline phytoplasma AF361020  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Florida Rhynchosia little leaf phytoplasma AF361019  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Ethiopian Gliricidia little leaf phytoplasma AF361018  (none) TTTGATCGTGGCTCAGGATTAACG--CTGG
Honduran Gliricidia little leaf phytoplasma AF361017  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Cactus phytoplasma Martinez-Soriano 2001 AF356846  (none) ------------------------------
Loofah witches-broom phytoplasma str. LfWB clone1 rrnB AF353090  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Rehmannia glutinosa var purpurea phytoplasma AF335107  (none) ------------------------------
Cactus witches-broom phytoplasma AF331973  (none) -----------------------------G
Aster yellows phytoplasma strain AY1 clone 10 AF322645  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Aster yellows phytoplasma strain AY1 clone 14 A AF322644  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Phytoplasma sp pathovar mosaic-inducing AF320575  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Ziziphus jujube witches-broom phytoplasma AF305240  (none) ------------------------------
Virginia creeper phytoplasma AF305198  (none) ------------------------------
Black raspberry witches-broom phytoplasma clone BRWB7 AF302841  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Carrot proliferation phytoplasma AF291682  (none) ------------------------------
Paulownia witches-broom phytoplasma AF279271  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Strawberry leafy fruit phytoplasma AF274876  (none) ------------------------------
Aster yellows phytoplasma B isolate 99UW108 AF268409  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Aster yellows phytoplasma A isolate 99UW111 AF268408  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Aster yellows phytoplasma B isolate 99UW89 AF268407  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Aster yellows phytoplasma A isolate 99UW93 AF268406  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Aster yellows phytoplasma O isolate 98UW166B AF268405  (none) ------------------------------
Aster yellows phytoplasma A isolate 98UW166A AF268404  (none) ------------------------------
Aster yellows phytoplasma A isolate 98UW159 AF268403  (none) ------------------------------
Bermuda grass white leaf phytoplasma AF248961  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Mexican periwinkle virescence phytoplasma AF248960  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Apple proliferation phytoplasma AF248958  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Pigeon pea witches-broom phytoplasma AF248957  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Loofah witches-broom phytoplasma AF248956  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Aster yellows phytoplasma AF245439  (none) ------------------------------
Black locust witches-broom phytoplasma AF244363  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Carludovica palmata leaf yellowing phytoplasma AF237615  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Red suture phytoplasma AF236123  (none) ------------------------------
Little peach phytoplasma AF236122  (none) ------------------------------
Peach rosette phytoplasma AF236121  (none) ------------------------------
Periwinkle little leaf phytoplasma AF228053  (none) ----------------------CG--CTGG
Brinjal little leaf phytoplasma AF228052  (none) ---------------------------TGG
Clover phyllody phytoplasma strain CPh rrnB AF222066  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Clover phyllody phytoplasma strain CPh rrnA AF222065  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Tomato big bud phytoplasma AF222064  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Aster yellows phytoplasma AF222063  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Potato purple top phytoplasma AF217247  (none) ------------------------------
Cactus phytoplasma Martinez-Soriano 1999 AF200718  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Cirsium yellows phytoplasma AF200431  (none) ------------------------------
Spiraea stunt phytoplasma AF190228  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Walnut witches broom phytoplasma rrnB AF190227  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Walnut witches broom phytoplasma rrnA AF190226  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Fragaria multicipita phytoplasma rrnB AF190225  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Fragaria multicipita phytoplasma rrnA AF190224  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Poinsettia branch-inducing phytoplasma AF190223  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Clover yellow edge phytoplasma AF189288  (none) ------------------------------
Ash yellows phytoplasma AF189215  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Elm yellows phytoplasma AF189214  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Alfalfa stunt phytoplasma AF177384  (none) ------------------------------
Soybean veinal necrosis phytoplasma AF177383  (none) ------------------------------
Clover yellow edge phytoplasma AF175304  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Clover yellow edge phytoplasma AF173558  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Chayote witches broom phytoplasma ChWBIII Mor5 AF147707  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Chayote witches broom phytoplasma ChWBIII Ch10 AF147706  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Phytoplasma HD1 AF122912  (none) ------------------------------
Elm yellows phytoplasma strain WVEY AF122911  (none) ------------------------------
Ash yellows phytoplasma strain LWB3 AF105317  (none) ------------------------------
Ash yellows phytoplasma strain AshY5 AF105316  (none) ------------------------------
Ash yellows phytoplasma strain AshY3 AF105315  (none) ------------------------------
Virginia grapevine yellows phytoplasma VGYIII AF060875  (none) ------------------------------
Sugarcane yellows phytoplasma type I strain ScYP I-Afr AF056095  (none) ------------------------------
Sugarcane yellows phytoplasma type I strain ScYP I-Barb AF056094  (none) ------------------TTCAAC--GCTG
Fragaria multicipita phytoplasma AF036354  (none) ------------------------------
Chinese pigeon pea witches-broom phytoplasma AF028813  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Phytoplasma sp Gph AB026155  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Candidatus Phytoplasma ziziphi AF279272  (none) TTTGATCCTGGCTCAGGATTAACG--CTGC
Candidatus Phytoplasma brasiliense AF147708  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Candidatus Phytoplasma cynodontis AJ550984  (none) ------------------------------
Candidatus Phytoplasma australiense L76865  (none) ------------------------------
Candidatus Phytoplasma solani AF248959  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Candidatus Phytoplasma oryzae D12581  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Candidatus Phytoplasma allocasuarinii AY135523  (none) ------------------------------
Candidatus Phytoplasma rhamni X76431  (none) ------------------------------
Candidatus Phytoplasma spartii X92869  (none) ------------------------------
Candidatus Phytoplasma phoenicium AF515636  (none) ------------------------------
Candidatus Phytoplasma luffae AF086621  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Candidatus Phytoplasma fraxini AF092209  (none) ------------------------------
Candidatus Phytoplasma castaneae AB054986  (none) TTTGATCCTGGCTCAGGATAAACG--CTGG
Candidatus Phytoplasma prunorum AJ542544  (none) TTTGATCCTGGCTCAGGATGAACG--CTGG
Candidatus Phytoplasma pyri AJ542543  (none) TTTGATCCTGGCTCAGGATGAACG--CTGG
Candidatus Phytoplasma mali AJ542541  (none) TTTGATCCTGGCTCAGGATGAACG--CTGG
Candidatus Phytoplasma trifolii CPDRRE  (none) ------------------------------
Candidatus Phytoplasma ulmi AF122910  (none) ------------------------------
Candidatus Phytoplasma vitis AF176319  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Candidatus Phytoplasma cocosnigeriae Y14175  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Candidatus Phytoplasma cocostanzaniae X80117  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Candidatus Phytoplasma palmae MO18747  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Candidatus Phytoplasma pruni L04682  (none) TTTGATCCTGGCTCAGGATGAACG--CTGG
Candidatus Phytoplasma aurantifolia MO15442  (none) -------CTGGCTCAGGATGAACG--CTGG
Candidatus Phytoplasma japonicum AB010425  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Candidatus Phytoplasma asteris M30790  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Acholeplasma palmae  (none) ------------------------------
Mollicutes sp X83438  (none) -------------------------GCTGG
Canadian peach X mycoplasma-like organism L33733  (none) ------------------------------
Mollicutes from R.frangula X76431  (none) ------------------------------
Phytoplasma sp. X92869  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Mollicutes from S.officinarum X76432  (none) CCCGATCCTTGCTCAGGATTAACG--CTGG
Mollicutes sp. ass. with papaya yellows crinkle disease Y10097  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Alfalfa witches broom from Oman AF438413  (none) ------------------------------
Mollicutes sp. ass. with papaya mosaic disease Y10096  (none) --TGATCCTGGCTCAGGATTAACG--CTGG
Cocky apple witches broom phytoplasma AJ295330  (none) ------------------------------
Group I phytoplasma D12569  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Bermuda grass white leaf phytoplasma Y16388  (none) -TTGATCCTGGCTCA-GGATAAAC-GCTGG
Phytoplasma sp. strain GaLL Y15865  (none) ------------------------------
Phytoplasma sp. Y11933  (none) TTTGATCCTGGCTCA-GGATGAAC-GCTGG
Mollicutes sp. from V.faba X83432  (none) ------------------------------
Mollicutes sp. from S.melongena X83431  (none) TTTGATCCTGGCTCA-GGATTAAC-GCTGG
Mycoplasma MLO FD transm. from V.vinifera to V.faba X76560  (none) ------------------------------
Mollicutes from C.juncea X76433  (none) ------------------------------
Mollicutes from V.myrtillus X76430  (none) TTTGATCCTGGCTCA-GGATTAAC-GCTGG
Mollicutes from C.roseus X76429  (none) TTTGATCCTGGCTCTTGGATTAAG-GCTGG
Mollicutes from V.Vinifera X76428  (none) ------------------ATTAAC-GCTGG
Mollicutes from C.anuum to C.roseus X76427  (none) -----------------------------G
Mollicutes X76425  (none) -------------------------GCTGC
Vigna little leaf phytoplasma AJ289195  (none) TTTGATCCTGGCTCAGGATTAACG--CTGG
Phytoplasma sp STRAWB2 U96616  (none) ------------------------------
Phytoplasma sp STRAWB1 U96614  (none) ------------------------------

Columns

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