Matrix 2425 of Study 1141
Matrices
Title: All Phytoplasma Seq
Description: Legacy TreeBASE Matrix ID = M1787
Rows
| Taxon Label | Row Segments | Characters 1?–30 |
|---|---|---|
| Tomato big bug mycoplasma-like organism L33760 | (none) | ------------------------------ |
| Sweet potato little leaf phytoplasma strain V4 AJ289193 | (none) | TTTGATCCTGGCTCAGGATTAACG--CT-- |
| Sweet potato witches-broom mycoplasma-like organism L33770 | (none) | ------------------------------ |
| Stylosanthes little leaf phytoplasma AJ289192 | (none) | TTAGATCCTGGCTCAGGATTAACG--CTGG |
| Strawberry lethal yellows phytoplasma AJ243045 | (none) | ------------------------------ |
| Strawberry green petal phytoplasma AJ243044 | (none) | -------------------------GCTGG |
| Rubus stunt phytoplasma Y16395 | (none) | ------------------------------ |
| Peach yellow leafroll phytoplasma Y16394 | (none) | -TTGATCCTGG-TCAGGATGAACG--C{AT |
| Phytoplasma sp strain LDG Y13912 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Peanut witches-broom mycoplasma-like organism L33765 | (none) | ------------------------------ |
| Phytoplasma sp U89378 | (none) | ------------------------------ |
| Phytoplasma sp strain StLL Y17055 | (none) | ------------------------------ |
| Phytoplasma sp PinP AJ310849 | (none) | TTTGATCCTGGCTCAGGATGAACG--CTGG |
| Phormium yellow leaf phytoplasma rrnB U43570 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Phormium yellow leaf phytoplasma rrnA U43569 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Pigeon pea little leaf phytoplasma AJ289191 | (none) | TTTGATCCTGGCTCAGGATTAACG--CT-G |
| Pigeon pea witches-broom mycoplasma-like organism L33735 | (none) | ------------------------------ |
| Phytoplasma sp Tomato Big Bud Australia Y08173 | (none) | --------------------------CTGG |
| Picris echiodes phyllody phytoplasma Y16393 | (none) | ------------TCAGGATGAACG--CTGG |
| Pear decline phytoplasma Y16392 | (none) | -TTTGATCCTAGTCAGGATGAACG--CTGG |
| Caribbean PPWB mycoplasma-like organism U18763 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Yucatan coconut lethal decline phytoplasma U18753 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Mycoplasma-like organism substrain ULW X68376 | (none) | TTTGATCCTTGGCTCAGGATTACG--CTGG |
| Mycoplasma-like organism substrain PPER X68374 | (none) | TTTGATCCTGGCTCAGGATGAACG--CTGG |
| Mycoplasma-like organism substrain AT X68375 | (none) | TTTGATCCTGGCTCAGGATGAACG--CTGG |
| Mycoplasma-like organism substrain ASHY X68339 | (none) | ------------------------------ |
| Mycoplasma-like organism substrain ACLR X68338 | (none) | -----------CTCAGGATTAACCGCCTGG |
| Mycoplasma-like organism substrain AAY X68373 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Mycoplasma-like organism Italian clover phyllody X77482 | (none) | GTTTGATCTGGCTCAGGATGAACG--CTGG |
| Mycoplasma-like organism plum leptonecrosis X77372 | (none) | ------------------------------ |
| Mycoplasma-like sp. M86340 | (none) | TTTGATCCTGGCTCA-GGATTAAC-GCTGG |
| Loofah witches-broom mycoplasma-like organism L33764 | (none) | ------------------------------ |
| Knautia arvensis phyllody phytoplasma 23S Y18052 | (none) | ------------------------------ |
| Italian alfalfa witches-broom phytoplasma Y16390 | (none) | ------------------------------ |
| Group II phytoplasma D12580 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Elm yellows mycoplasma-like organism rDNA L33763 | (none) | ------------------------------ |
| Picris echioides yellows phytoplasma Y16389 | (none) | ----------------------AACGCTGG |
| Clover yellow edge mycoplasma-like organism L33766 | (none) | ------------------------------ |
| Clover phyllody mycoplasma-like organism L33762 | (none) | ------------------------------ |
| Bindweed yellows phytoplasma Y16391 | (none) | TTTGATCCT-GCTCAGGATTAACG--CTGG |
| Alder yellows phytoplasma Y16387 | (none) | ---------------------ACG--CTGG |
| Aster yellows mycoplasma-like organism L33767 | (none) | ------------------------------ |
| Ash yellows mycoplasma-like organism L33759 | (none) | ------------------------------ |
| Mulberry dwarf phytoplasma AY075038 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Ziziphus jujube witches-broom phytoplasma AY072722 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| European stone fruit yellows phytoplasma AY029540 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Alder yellows phytoplasma AY028789 | (none) | ------------------------------ |
| Bermuda grass white leaf phytoplasma AJ550986 | (none) | ------------------------------ |
| Bermuda grass white leaf phytoplasma AJ550985 | (none) | ------------------------------ |
| Candidatus Phytoplasma phoenicium AF515637 | (none) | ------------------------------ |
| Sorghum grassy shoot phytoplasma variant II AF509325 | (none) | ------------------------------ |
| Sorghum grassy shoot phytoplasma variant I AF509324 | (none) | ------------------------------ |
| Cynodon white leaf phytoplasma AF509321 | (none) | ------------------------------ |
| Aster yellows phytoplasma B AF503568 | (none) | ------------------------------ |
| Chinaberry yellows phytoplasma strain CbY1 AF495882 | (none) | ------------------------------ |
| Chinaberry yellows phytoplasma AF495657 | (none) | ------------------------------ |
| Almond witches-broom phytoplasma strain AlmWB-N1 AF455041 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Almond witches-broom phytoplasma strain AlmWB-P1 AF455040 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Almond witches-broom phytoplasma strain AlmWB4 AF455039 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Almond witches-broom phytoplasma strain AlmWB3 AF455038 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Phytoplasma sp PY1 AF453328 | (none) | ------------------------------ |
| Texas Phoenix palm phytoplasma AF434989 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Clover proliferation phytoplasma strain EY-IL 1 AF409070 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Clover proliferation phytoplasma strain EY-IL 2 AF409069 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Almond witches- broom phytoplasma strain AlmWB2 AF390137 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Almond witches- broom phytoplasma strain AlmWB1 AF390136 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Cirsium white leaf phytoplasma rrnB AF373106 | (none) | ------------------------------ |
| Cirsium white leaf phytoplasma rrnA AF373105 | (none) | ------------------------------ |
| Delion virescence phytoplasma rrnB AF370120 | (none) | --------------------AACG--CTGG |
| Delion virescence phytoplasma rrnA AF370119 | (none) | ---------------------ACG--CTGG |
| Florida Panus decline phytoplasma AF361020 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Florida Rhynchosia little leaf phytoplasma AF361019 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Ethiopian Gliricidia little leaf phytoplasma AF361018 | (none) | TTTGATCGTGGCTCAGGATTAACG--CTGG |
| Honduran Gliricidia little leaf phytoplasma AF361017 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Cactus phytoplasma Martinez-Soriano 2001 AF356846 | (none) | ------------------------------ |
| Loofah witches-broom phytoplasma str. LfWB clone1 rrnB AF353090 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Rehmannia glutinosa var purpurea phytoplasma AF335107 | (none) | ------------------------------ |
| Cactus witches-broom phytoplasma AF331973 | (none) | -----------------------------G |
| Aster yellows phytoplasma strain AY1 clone 10 AF322645 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Aster yellows phytoplasma strain AY1 clone 14 A AF322644 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Phytoplasma sp pathovar mosaic-inducing AF320575 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Ziziphus jujube witches-broom phytoplasma AF305240 | (none) | ------------------------------ |
| Virginia creeper phytoplasma AF305198 | (none) | ------------------------------ |
| Black raspberry witches-broom phytoplasma clone BRWB7 AF302841 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Carrot proliferation phytoplasma AF291682 | (none) | ------------------------------ |
| Paulownia witches-broom phytoplasma AF279271 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Strawberry leafy fruit phytoplasma AF274876 | (none) | ------------------------------ |
| Aster yellows phytoplasma B isolate 99UW108 AF268409 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Aster yellows phytoplasma A isolate 99UW111 AF268408 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Aster yellows phytoplasma B isolate 99UW89 AF268407 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Aster yellows phytoplasma A isolate 99UW93 AF268406 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Aster yellows phytoplasma O isolate 98UW166B AF268405 | (none) | ------------------------------ |
| Aster yellows phytoplasma A isolate 98UW166A AF268404 | (none) | ------------------------------ |
| Aster yellows phytoplasma A isolate 98UW159 AF268403 | (none) | ------------------------------ |
| Bermuda grass white leaf phytoplasma AF248961 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Mexican periwinkle virescence phytoplasma AF248960 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Apple proliferation phytoplasma AF248958 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Pigeon pea witches-broom phytoplasma AF248957 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Loofah witches-broom phytoplasma AF248956 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Aster yellows phytoplasma AF245439 | (none) | ------------------------------ |
| Black locust witches-broom phytoplasma AF244363 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Carludovica palmata leaf yellowing phytoplasma AF237615 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Red suture phytoplasma AF236123 | (none) | ------------------------------ |
| Little peach phytoplasma AF236122 | (none) | ------------------------------ |
| Peach rosette phytoplasma AF236121 | (none) | ------------------------------ |
| Periwinkle little leaf phytoplasma AF228053 | (none) | ----------------------CG--CTGG |
| Brinjal little leaf phytoplasma AF228052 | (none) | ---------------------------TGG |
| Clover phyllody phytoplasma strain CPh rrnB AF222066 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Clover phyllody phytoplasma strain CPh rrnA AF222065 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Tomato big bud phytoplasma AF222064 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Aster yellows phytoplasma AF222063 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Potato purple top phytoplasma AF217247 | (none) | ------------------------------ |
| Cactus phytoplasma Martinez-Soriano 1999 AF200718 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Cirsium yellows phytoplasma AF200431 | (none) | ------------------------------ |
| Spiraea stunt phytoplasma AF190228 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Walnut witches broom phytoplasma rrnB AF190227 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Walnut witches broom phytoplasma rrnA AF190226 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Fragaria multicipita phytoplasma rrnB AF190225 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Fragaria multicipita phytoplasma rrnA AF190224 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Poinsettia branch-inducing phytoplasma AF190223 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Clover yellow edge phytoplasma AF189288 | (none) | ------------------------------ |
| Ash yellows phytoplasma AF189215 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Elm yellows phytoplasma AF189214 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Alfalfa stunt phytoplasma AF177384 | (none) | ------------------------------ |
| Soybean veinal necrosis phytoplasma AF177383 | (none) | ------------------------------ |
| Clover yellow edge phytoplasma AF175304 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Clover yellow edge phytoplasma AF173558 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Chayote witches broom phytoplasma ChWBIII Mor5 AF147707 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Chayote witches broom phytoplasma ChWBIII Ch10 AF147706 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Phytoplasma HD1 AF122912 | (none) | ------------------------------ |
| Elm yellows phytoplasma strain WVEY AF122911 | (none) | ------------------------------ |
| Ash yellows phytoplasma strain LWB3 AF105317 | (none) | ------------------------------ |
| Ash yellows phytoplasma strain AshY5 AF105316 | (none) | ------------------------------ |
| Ash yellows phytoplasma strain AshY3 AF105315 | (none) | ------------------------------ |
| Virginia grapevine yellows phytoplasma VGYIII AF060875 | (none) | ------------------------------ |
| Sugarcane yellows phytoplasma type I strain ScYP I-Afr AF056095 | (none) | ------------------------------ |
| Sugarcane yellows phytoplasma type I strain ScYP I-Barb AF056094 | (none) | ------------------TTCAAC--GCTG |
| Fragaria multicipita phytoplasma AF036354 | (none) | ------------------------------ |
| Chinese pigeon pea witches-broom phytoplasma AF028813 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Phytoplasma sp Gph AB026155 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Candidatus Phytoplasma ziziphi AF279272 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGC |
| Candidatus Phytoplasma brasiliense AF147708 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Candidatus Phytoplasma cynodontis AJ550984 | (none) | ------------------------------ |
| Candidatus Phytoplasma australiense L76865 | (none) | ------------------------------ |
| Candidatus Phytoplasma solani AF248959 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Candidatus Phytoplasma oryzae D12581 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Candidatus Phytoplasma allocasuarinii AY135523 | (none) | ------------------------------ |
| Candidatus Phytoplasma rhamni X76431 | (none) | ------------------------------ |
| Candidatus Phytoplasma spartii X92869 | (none) | ------------------------------ |
| Candidatus Phytoplasma phoenicium AF515636 | (none) | ------------------------------ |
| Candidatus Phytoplasma luffae AF086621 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Candidatus Phytoplasma fraxini AF092209 | (none) | ------------------------------ |
| Candidatus Phytoplasma castaneae AB054986 | (none) | TTTGATCCTGGCTCAGGATAAACG--CTGG |
| Candidatus Phytoplasma prunorum AJ542544 | (none) | TTTGATCCTGGCTCAGGATGAACG--CTGG |
| Candidatus Phytoplasma pyri AJ542543 | (none) | TTTGATCCTGGCTCAGGATGAACG--CTGG |
| Candidatus Phytoplasma mali AJ542541 | (none) | TTTGATCCTGGCTCAGGATGAACG--CTGG |
| Candidatus Phytoplasma trifolii CPDRRE | (none) | ------------------------------ |
| Candidatus Phytoplasma ulmi AF122910 | (none) | ------------------------------ |
| Candidatus Phytoplasma vitis AF176319 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Candidatus Phytoplasma cocosnigeriae Y14175 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Candidatus Phytoplasma cocostanzaniae X80117 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Candidatus Phytoplasma palmae MO18747 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Candidatus Phytoplasma pruni L04682 | (none) | TTTGATCCTGGCTCAGGATGAACG--CTGG |
| Candidatus Phytoplasma aurantifolia MO15442 | (none) | -------CTGGCTCAGGATGAACG--CTGG |
| Candidatus Phytoplasma japonicum AB010425 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Candidatus Phytoplasma asteris M30790 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Acholeplasma palmae | (none) | ------------------------------ |
| Mollicutes sp X83438 | (none) | -------------------------GCTGG |
| Canadian peach X mycoplasma-like organism L33733 | (none) | ------------------------------ |
| Mollicutes from R.frangula X76431 | (none) | ------------------------------ |
| Phytoplasma sp. X92869 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Mollicutes from S.officinarum X76432 | (none) | CCCGATCCTTGCTCAGGATTAACG--CTGG |
| Mollicutes sp. ass. with papaya yellows crinkle disease Y10097 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Alfalfa witches broom from Oman AF438413 | (none) | ------------------------------ |
| Mollicutes sp. ass. with papaya mosaic disease Y10096 | (none) | --TGATCCTGGCTCAGGATTAACG--CTGG |
| Cocky apple witches broom phytoplasma AJ295330 | (none) | ------------------------------ |
| Group I phytoplasma D12569 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Bermuda grass white leaf phytoplasma Y16388 | (none) | -TTGATCCTGGCTCA-GGATAAAC-GCTGG |
| Phytoplasma sp. strain GaLL Y15865 | (none) | ------------------------------ |
| Phytoplasma sp. Y11933 | (none) | TTTGATCCTGGCTCA-GGATGAAC-GCTGG |
| Mollicutes sp. from V.faba X83432 | (none) | ------------------------------ |
| Mollicutes sp. from S.melongena X83431 | (none) | TTTGATCCTGGCTCA-GGATTAAC-GCTGG |
| Mycoplasma MLO FD transm. from V.vinifera to V.faba X76560 | (none) | ------------------------------ |
| Mollicutes from C.juncea X76433 | (none) | ------------------------------ |
| Mollicutes from V.myrtillus X76430 | (none) | TTTGATCCTGGCTCA-GGATTAAC-GCTGG |
| Mollicutes from C.roseus X76429 | (none) | TTTGATCCTGGCTCTTGGATTAAG-GCTGG |
| Mollicutes from V.Vinifera X76428 | (none) | ------------------ATTAAC-GCTGG |
| Mollicutes from C.anuum to C.roseus X76427 | (none) | -----------------------------G |
| Mollicutes X76425 | (none) | -------------------------GCTGC |
| Vigna little leaf phytoplasma AJ289195 | (none) | TTTGATCCTGGCTCAGGATTAACG--CTGG |
| Phytoplasma sp STRAWB2 U96616 | (none) | ------------------------------ |
| Phytoplasma sp STRAWB1 U96614 | (none) | ------------------------------ |
Columns
None of the columns has a description.