@ARTICLE{TreeBASE2Ref19900,
author = {Eric Wada and Daniel Potter and M. Andrew Walker},
title = {Using Microsatellite Data to Investigate Species Boundaries and Gene Flow Among Vitis californica, V. girdiana, and V. vinifera},
year = {2011},
keywords = {grape, introgression, molecular data, SSRs, taxonomy},
doi = {},
url = {http://},
pmid = {},
journal = {Systematic Botany},
volume = {},
number = {},
pages = {},
abstract = {Two species of grape, Vitis californica and V. girdiana, are native in California, while V. vinifera is widely cultivated in the state. The two native species are not easily distinguished by morphological characteristics, so geographic origin is often used to identify them. The abundance of vineyards in California, allows for the possibility of gene flow between V. vinifera, which has perfect flowers, and the native dioecious species. Hybrid forms of V. girdiana or V. californica and V. vinifera can therefore be found in the wild. This study used microsatellite DNA markers to investigate species boundaries between the two native taxa. A secondary goal was to investigate the prevalence of gene flow between the two wild species and V. vinifera. Data from eleven microsatellite loci were analyzed using both genetic distance and a Bayesian model-based approach implemented in the program STRUCTURE 2.1. The data supported maintaining V. californica and V. girdiana as separate species. Gene flow between V. vinifera and either V. californica or V. girdiana was also detected though a more rigorous study to investigate the frequency with which hybrids occur is warranted. This study also identified one population of possible hybrids between V. californica and V. girdiana in the southern Sierra Nevada, suggesting that there is very limited gene flow between these two species.}
}
Matrix 9885 of Study 11759
Citation title:
"Using Microsatellite Data to Investigate Species Boundaries and Gene Flow Among Vitis californica, V. girdiana, and V. vinifera".
Study name:
"Using Microsatellite Data to Investigate Species Boundaries and Gene Flow Among Vitis californica, V. girdiana, and V. vinifera".
This study is part of submission 11749
(Status: Published).
Matrices
Title: CalGird Microsat Distance Matrix
Rows
|
Taxon Label |
Row Segments |
Characters 1?–30 |
| Vitis girdiana SC1 |
(none)
|
(no data) |
| Vitis girdiana SC2 |
(none)
|
(no data) |
| Vitis girdiana SC3 |
(none)
|
(no data) |
| Vitis girdiana SC4 |
(none)
|
(no data) |
| Vitis girdiana SC5 |
(none)
|
(no data) |
| Vitis girdiana SC6 |
(none)
|
(no data) |
| Vitis girdiana SC7 |
(none)
|
(no data) |
| Vitis girdiana SC8 |
(none)
|
(no data) |
| Vitis girdiana SC9 |
(none)
|
(no data) |
| Vitis girdiana SC10 |
(none)
|
(no data) |
| Vitis girdiana SC11 |
(none)
|
(no data) |
| Vitis girdiana SC12 |
(none)
|
(no data) |
| Vitis girdiana SC13 |
(none)
|
(no data) |
| Vitis girdiana SC14 |
(none)
|
(no data) |
| Vitis girdiana SC15 |
(none)
|
(no data) |
| Vitis girdiana SC16 |
(none)
|
(no data) |
| Vitis girdiana SC17 |
(none)
|
(no data) |
| Vitis girdiana SC18 |
(none)
|
(no data) |
| Vitis girdiana SC20 |
(none)
|
(no data) |
| Vitis girdiana SC21 |
(none)
|
(no data) |
| Vitis girdiana SC22 |
(none)
|
(no data) |
| Vitis girdiana SC23 |
(none)
|
(no data) |
| Vitis girdiana SC24 |
(none)
|
(no data) |
| Vitis girdiana SC27 |
(none)
|
(no data) |
| Vitis girdiana SC28 |
(none)
|
(no data) |
| Vitis girdiana SC30 |
(none)
|
(no data) |
| Vitis girdiana SC31 |
(none)
|
(no data) |
| Vitis girdiana SC32 |
(none)
|
(no data) |
| Vitis girdiana SC33 |
(none)
|
(no data) |
| Vitis girdiana SC35 |
(none)
|
(no data) |
| Vitis girdiana SC36 |
(none)
|
(no data) |
| Vitis girdiana SC37 |
(none)
|
(no data) |
| Vitis girdiana SC38 |
(none)
|
(no data) |
| Vitis girdiana SC39 |
(none)
|
(no data) |
| Vitis girdiana SC42 |
(none)
|
(no data) |
| Vitis girdiana SC43 |
(none)
|
(no data) |
| Vitis girdiana SC44 |
(none)
|
(no data) |
| Vitis girdiana SC45 |
(none)
|
(no data) |
| Vitis girdiana SC46 |
(none)
|
(no data) |
| Vitis girdiana SC47 |
(none)
|
(no data) |
| Vitis girdiana SC50 |
(none)
|
(no data) |
| Vitis girdiana SC51 |
(none)
|
(no data) |
| Vitis girdiana SC52 |
(none)
|
(no data) |
| Vitis girdiana SC53 |
(none)
|
(no data) |
| Vitis girdiana ANU20 |
(none)
|
(no data) |
| Vitis girdiana ANU25 |
(none)
|
(no data) |
| Vitis girdiana ANU26 |
(none)
|
(no data) |
| Vitis girdiana ANU27 |
(none)
|
(no data) |
| Vitis girdiana ANU72 |
(none)
|
(no data) |
| Vitis girdiana ANU75 |
(none)
|
(no data) |
| Vitis girdiana ANU78 |
(none)
|
(no data) |
| Vitis californica NC2 |
(none)
|
(no data) |
| Vitis californica NC3 |
(none)
|
(no data) |
| Vitis californica NC4 |
(none)
|
(no data) |
| Vitis californica NC7 |
(none)
|
(no data) |
| Vitis californica NC8 |
(none)
|
(no data) |
| Vitis californica NC9 |
(none)
|
(no data) |
| Vitis californica NC10 |
(none)
|
(no data) |
| Vitis californica NC11 |
(none)
|
(no data) |
| Vitis californica NC12 |
(none)
|
(no data) |
| Vitis californica NC13 |
(none)
|
(no data) |
| Vitis californica NC14 |
(none)
|
(no data) |
| Vitis californica NC15 |
(none)
|
(no data) |
| Vitis californica NC16 |
(none)
|
(no data) |
| Vitis californica NC17 |
(none)
|
(no data) |
| Vitis californica NC18 |
(none)
|
(no data) |
| Vitis californica NC19 |
(none)
|
(no data) |
| Vitis californica NC20 |
(none)
|
(no data) |
| Vitis californica NC21 |
(none)
|
(no data) |
| Vitis californica NC23 |
(none)
|
(no data) |
| Vitis californica NC24 |
(none)
|
(no data) |
| Vitis californica NC25 |
(none)
|
(no data) |
| Vitis californica NC26 |
(none)
|
(no data) |
| Vitis californica NC27 |
(none)
|
(no data) |
| Vitis californica NC28 |
(none)
|
(no data) |
| Vitis californica NC29 |
(none)
|
(no data) |
| Vitis californica NC30 |
(none)
|
(no data) |
| Vitis californica NC31 |
(none)
|
(no data) |
| Vitis californica NC32 |
(none)
|
(no data) |
| Vitis californica NC33 |
(none)
|
(no data) |
| Vitis californica NC34 |
(none)
|
(no data) |
| Vitis californica NC35 |
(none)
|
(no data) |
| Vitis californica NC36 |
(none)
|
(no data) |
| Vitis californica NC37 |
(none)
|
(no data) |
| Vitis californica NC38 |
(none)
|
(no data) |
| Vitis californica NC39 |
(none)
|
(no data) |
| Vitis californica NC40 |
(none)
|
(no data) |
| Vitis californica NC41 |
(none)
|
(no data) |
| Vitis californica NC42 |
(none)
|
(no data) |
| Vitis californica NC43 |
(none)
|
(no data) |
| Vitis californica NC44 |
(none)
|
(no data) |
| Vitis californica NC46 |
(none)
|
(no data) |
| Vitis californica NC47 |
(none)
|
(no data) |
| Vitis californica NC48 |
(none)
|
(no data) |
| Vitis californica NC49 |
(none)
|
(no data) |
| Vitis californica NC50 |
(none)
|
(no data) |
| Vitis californica NC51 |
(none)
|
(no data) |
| Vitis californica NC52 |
(none)
|
(no data) |
| Vitis californica NC53 |
(none)
|
(no data) |
| Vitis californica NC54 |
(none)
|
(no data) |
| Vitis californica NC55 |
(none)
|
(no data) |
| Vitis californica NC57 |
(none)
|
(no data) |
| Vitis californica NC58 |
(none)
|
(no data) |
| Vitis californica NC59 |
(none)
|
(no data) |
| Vitis californica NC60 |
(none)
|
(no data) |
| Vitis californica NC61 |
(none)
|
(no data) |
| Vitis californica NC62 |
(none)
|
(no data) |
| Vitis californica NC63 |
(none)
|
(no data) |
| Vitis californica RR3 |
(none)
|
(no data) |
| Vitis californica RR5 |
(none)
|
(no data) |
| Vitis californica RR7 |
(none)
|
(no data) |
| Vitis californica CC1 |
(none)
|
(no data) |
| Vitis californica CC2 |
(none)
|
(no data) |
| Vitis californica CC3 |
(none)
|
(no data) |
| Vitis californica CC7 |
(none)
|
(no data) |
| Vitis californica CC8 |
(none)
|
(no data) |
| Vitis californica CC10 |
(none)
|
(no data) |
| Vitis californica CC12 |
(none)
|
(no data) |
| Vitis californica CC13 |
(none)
|
(no data) |
| Vitis californica CC14 |
(none)
|
(no data) |
| Vitis californica CC15 |
(none)
|
(no data) |
| Vitis californica CC17 |
(none)
|
(no data) |
| Vitis vinifera Alica |
(none)
|
(no data) |
| Vitis vinifera Carign |
(none)
|
(no data) |
| Vitis vinifera Missio |
(none)
|
(no data) |
| Vitis vinifera Muscat |
(none)
|
(no data) |
| Vitis vinifera Zinfan |
(none)
|
(no data) |
Columns
| Column |
Character Description |
|
1
|
Vitis girdiana SC1
|
|
2
|
Vitis girdiana SC2
|
|
3
|
Vitis girdiana SC3
|
|
4
|
Vitis girdiana SC4
|
|
5
|
Vitis girdiana SC5
|
|
6
|
Vitis girdiana SC6
|
|
7
|
Vitis girdiana SC7
|
|
8
|
Vitis girdiana SC8
|
|
9
|
Vitis girdiana SC9
|
|
10
|
Vitis girdiana SC10
|
|
11
|
Vitis girdiana SC11
|
|
12
|
Vitis girdiana SC12
|
|
13
|
Vitis girdiana SC13
|
|
14
|
Vitis girdiana SC14
|
|
15
|
Vitis girdiana SC15
|
|
16
|
Vitis girdiana SC16
|
|
17
|
Vitis girdiana SC17
|
|
18
|
Vitis girdiana SC18
|
|
19
|
Vitis girdiana SC20
|
|
20
|
Vitis girdiana SC21
|
|
21
|
Vitis girdiana SC22
|
|
22
|
Vitis girdiana SC23
|
|
23
|
Vitis girdiana SC24
|
|
24
|
Vitis girdiana SC27
|
|
25
|
Vitis girdiana SC28
|
|
26
|
Vitis girdiana SC30
|
|
27
|
Vitis girdiana SC31
|
|
28
|
Vitis girdiana SC32
|
|
29
|
Vitis girdiana SC33
|
|
30
|
Vitis girdiana SC35
|
|
31
|
Vitis girdiana SC36
|
|
32
|
Vitis girdiana SC37
|
|
33
|
Vitis girdiana SC38
|
|
34
|
Vitis girdiana SC39
|
|
35
|
Vitis girdiana SC42
|
|
36
|
Vitis girdiana SC43
|
|
37
|
Vitis girdiana SC44
|
|
38
|
Vitis girdiana SC45
|
|
39
|
Vitis girdiana SC46
|
|
40
|
Vitis girdiana SC47
|
|
41
|
Vitis girdiana SC50
|
|
42
|
Vitis girdiana SC51
|
|
43
|
Vitis girdiana SC52
|
|
44
|
Vitis girdiana SC53
|
|
45
|
Vitis girdiana ANU20
|
|
46
|
Vitis girdiana ANU25
|
|
47
|
Vitis girdiana ANU26
|
|
48
|
Vitis girdiana ANU27
|
|
49
|
Vitis girdiana ANU72
|
|
50
|
Vitis girdiana ANU75
|
|
51
|
Vitis girdiana ANU78
|
|
52
|
Vitis californica NC2
|
|
53
|
Vitis californica NC3
|
|
54
|
Vitis californica NC4
|
|
55
|
Vitis californica NC7
|
|
56
|
Vitis californica NC8
|
|
57
|
Vitis californica NC9
|
|
58
|
Vitis californica NC10
|
|
59
|
Vitis californica NC11
|
|
60
|
Vitis californica NC12
|
|
61
|
Vitis californica NC13
|
|
62
|
Vitis californica NC14
|
|
63
|
Vitis californica NC15
|
|
64
|
Vitis californica NC16
|
|
65
|
Vitis californica NC17
|
|
66
|
Vitis californica NC18
|
|
67
|
Vitis californica NC19
|
|
68
|
Vitis californica NC20
|
|
69
|
Vitis californica NC21
|
|
70
|
Vitis californica NC23
|
|
71
|
Vitis californica NC24
|
|
72
|
Vitis californica NC25
|
|
73
|
Vitis californica NC26
|
|
74
|
Vitis californica NC27
|
|
75
|
Vitis californica NC28
|
|
76
|
Vitis californica NC29
|
|
77
|
Vitis californica NC30
|
|
78
|
Vitis californica NC31
|
|
79
|
Vitis californica NC32
|
|
80
|
Vitis californica NC33
|
|
81
|
Vitis californica NC34
|
|
82
|
Vitis californica NC35
|
|
83
|
Vitis californica NC36
|
|
84
|
Vitis californica NC37
|
|
85
|
Vitis californica NC38
|
|
86
|
Vitis californica NC39
|
|
87
|
Vitis californica NC40
|
|
88
|
Vitis californica NC41
|
|
89
|
Vitis californica NC42
|
|
90
|
Vitis californica NC43
|
|
91
|
Vitis californica NC44
|
|
92
|
Vitis californica NC46
|
|
93
|
Vitis californica NC47
|
|
94
|
Vitis californica NC48
|
|
95
|
Vitis californica NC49
|
|
96
|
Vitis californica NC50
|
|
97
|
Vitis californica NC51
|
|
98
|
Vitis californica NC52
|
|
99
|
Vitis californica NC53
|
|
100
|
Vitis californica NC54
|
|
101
|
Vitis californica NC55
|
|
102
|
Vitis californica NC57
|
|
103
|
Vitis californica NC58
|
|
104
|
Vitis californica NC59
|
|
105
|
Vitis californica NC60
|
|
106
|
Vitis californica NC61
|
|
107
|
Vitis californica NC62
|
|
108
|
Vitis californica NC63
|
|
109
|
Vitis californica RR3
|
|
110
|
Vitis californica RR5
|
|
111
|
Vitis californica RR7
|
|
112
|
Vitis californica CC1
|
|
113
|
Vitis californica CC2
|
|
114
|
Vitis californica CC3
|
|
115
|
Vitis californica CC7
|
|
116
|
Vitis californica CC8
|
|
117
|
Vitis californica CC10
|
|
118
|
Vitis californica CC12
|
|
119
|
Vitis californica CC13
|
|
120
|
Vitis californica CC14
|
|
121
|
Vitis californica CC15
|
|
122
|
Vitis californica CC17
|
|
123
|
Vitis vinifera Alica
|
|
124
|
Vitis vinifera Carign
|
|
125
|
Vitis vinifera Missio
|
|
126
|
Vitis vinifera Muscat
|
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