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Matrix 11123 of Study 12225

About Citation title: "Phylogeny of Leavenworthia S-alleles suggests unidirectional mating system evolution and enhanced positive selection following an ancient population bottleneck".
About Study name: "Phylogeny of Leavenworthia S-alleles suggests unidirectional mating system evolution and enhanced positive selection following an ancient population bottleneck".
About This study is part of submission 12225 (Status: Published).

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Title: Brassicaceae SRK alignment

Description: Contains all Brassicaceae SRK alleles used in associated study

Download all Row Segment Metadata

Rows

Taxon Label Row Segments Characters 1?–30
Arabidopsis thaliana ARK1 all View TTATACTCGAGATTATACTTAAACTCTGC-
Arabidopsis thaliana ARK3 View GTTTACTCGAGATTAAGCATAAGCTCCAC-
Leavenworthia alabamica LaSRK30 View TCTATATCGCTATTGCAAATGACGGCCGTT
Leavenworthia alabamica LaSRK34 View TCTATTTGGCTATTGCAAATGACGTACGTT
Leavenworthia alabamica LaSRK47 View TCTATCTCACTATTGCAACTGACGTACGTT
Leavenworthia alabamica LaSRK1 View TTGTTCTCGCTATTGCGAATTACGTACACT
Leavenworthia alabamica LaSRK49 View TCTCTCTCGCTATTGCAAATGACGCACACT
Leavenworthia alabamica LaSRK10 View TCTATGTCGTTAATGCAACTGACGTACACT
Leavenworthia stylosa LsSRK04 View TCTATGTCGTTAATGCAACTGACGTACACT
Leavenworthia alabamica LaSRK40 View TATATCTCGCTATTGCAAATGGCGTACACT
Leavenworthia stylosa LsSRK09 View TATATCTCGCTATTGCAAATGGCGTACACT
Leavenworthia exigua LeSRK01a View TCTATCTCGCTATTGCAAATGACGTACACT
Leavenworthia exigua LeSRK01c View TCTATCTCGCTATTGCAAATGACGTACACT
Leavenworthia exigua LeSRK01b View TCTATCTCGCTATTGCAAATGACGTACACT
Leavenworthia alabamica LaSRK18 View TCTATCTTGCTACTGCAAATGACTTACATT
Leavenworthia alabamica LaSRK46 View TCTATCTCGCTGTTGCAAATGACGTACGCT
Leavenworthia alabamica LaSRK17 View TCTATCTCGATATTGCGAATGACGTACACT
Leavenworthia stylosa LsSRK02 View TCTATCTGGCTATTGCGAATGTCGTACACT
Leavenworthia torulosa LtSRK01a View TCTATCTCGCAATTGCGAATGTGGTACACT
Leavenworthia torulosa LtSRK01d View TCTATCTCGCAATTGCGAATGTGGTACACT
Leavenworthia torulosa LtSRK01c View TCTATCTCGCAATTGCGAATGTGGTACACT
Leavenworthia torulosa LtSRK01b View TCTATCTCGCAATTGCGAATGTGG?ACACT
Leavenworthia torulosa LtSRK01e View TCTATCTCGCAATTGCGAATGTGGTACACT
Leavenworthia alabamica LaSRK48 View TCTATCTCGCTATTGCAATTGACGTACACT
Leavenworthia alabamica LaSRK45 View TCGATCCAGTTATTGCAAATGACGCACATT
Leavenworthia stylosa LsSRK13 View TCGATCCAGTTATTGCAAATGACGCACATT
Leavenworthia alabamica LaSRK50 View TCTGTCTCGCTATTGCAAATGCCGTACACT
Leavenworthia alabamica LaSRK54 View TCTATCTCGCTATTGCAAATGACGTATGTA
Leavenworthia alabamica LaSRK43 View TCTATCTCGTTATTGCAAATGACGTACTTT
Leavenworthia alabamica LaSRK51 View TCTATCTCGCTATTGCAAATGACGTACACT
Leavenworthia alabamica LaSRK26 View TCTATCTCGATATTGCAGTTGACGTACTTT
Leavenworthia stylosa LsSRK10 View TCTATCTTGATATTGCAGTTGACGCACTTT
Leavenworthia alabamica LaSRK27 View TCTGTCTTGGTATTGCGATTGTGGTACATT
Leavenworthia crassa LcSRK09 View TCTGTCTTGGTATTGCGATTGTGGTACATT
Leavenworthia stylosa LsSRK01 View TCTATCTCGGTATTGCGATTGTGGTACATT
Leavenworthia alabamica LaSRK22 View TCTATCTCGCTATTGCAAATGACTAACATC
Leavenworthia crassa LcSRK07 View TCTATCTCGCTATTGCAAATGACTAACATC
Leavenworthia alabamica LaSRK6 View GCAATCTCGCTATTGCGAATGACGTATACT
Leavenworthia alabamica LaSRK12 View TCTATCTCGCTATTGCAATTGACGTCCGGT
Leavenworthia alabamica LaSRK13 View TCTATCTTGCTATTACAATTAACGCACTTT
Leavenworthia crassa LcSRK06 View TCTATCTCGCTGTTGCAAATGACGTACGCT
Leavenworthia stylosa LsSRK12 View TCTATCTCGCTGTTGCAAATGACGTACGCT
Leavenworthia alabamica LaSRK31 View TCTATCTCGCTATTGCAATTGACGTACGTT
Leavenworthia alabamica LaSRK44 View TCTATCTCGGTATTGCAAATGACGTACGCT
Leavenworthia alabamica LaSRK37 View TCTATCTCGCTATTGCAAATGACATACGCT
Leavenworthia alabamica LaSRK11 View TCGATCTCGCTATTGCAAATGTCGTACACT
Leavenworthia alabamica LaSRK15 View TCTATCTTGCTATTACAAATAACGTACGCT
Leavenworthia crassa LcSRK01 View TCCATTTCGCTATTGCAAATGACGTACTTT
Leavenworthia alabamica LaSRK23 View TCTATCTGGCTATTGCAAATGATGTATACT
Leavenworthia alabamica LaSRKa2 View TCTATCTCGCTATTGCAAATGATGTACACT
Leavenworthia alabamica LaSRK32 View TCTATCTCGCTATTGCAAATGACGTACATT
Leavenworthia stylosa LsSRK03 View TTTATCTCGTTACTGCAAATGATGTCCGTT
Leavenworthia alabamica LaSRK14 View TCTATCTCGCTACTGCAATTGACGTACCTT
Leavenworthia alabamica LaSRK35 View TCTATCTCCCTATTGCAAATGACGTACATC
Leavenworthia alabamica LaSRK28 View TCTATCTCGCTATTGCAATTGACGTACCTT
Leavenworthia alabamica LaSRK29 View TCTATCTCGCTATTGCAGATGACGTACACT
Leavenworthia crassa LcSRK04 View TCTATCTCGCTATTGCAAATGACGTCCGCT
Leavenworthia alabamica LaSRK36 View TCTATCTCGTTATTGCAATTGACGTCCGTG
Leavenworthia crassa LcSRK10 View TCTATCTCGTTATTGCAATTGACGTCCGTG
Leavenworthia crassa LcSRK02 View TCTATCTCGCTATTGCAACTGACGCACGCT
Leavenworthia crassa LcSRK05 View TCTATCTCGCTATTGCAAATGACGTACACG
Leavenworthia stylosa LsSRK08 View TCTATCTCGCTATTGCAAATGACGTACGCT
Leavenworthia alabamica LaSRK16 View TCTATCTCGCTATTGCGAATGTCGTACACT
Leavenworthia crassa LcSRK03 View TCTATCTCGCTATTGCAAATGACGTATACT
Leavenworthia alabamica LaSRK21 View TCTATCTCGCTATTGCGAATATCGTCCATT
Leavenworthia alabamica LaSRK5 View TCAATCTTGATATTGCGAATGTTGTACACT
Leavenworthia alabamica LaSRK19 View TCTATCTCGCTATTGCAAATAACGTCCACT
Leavenworthia alabamica LaSRK53 View TCTACCTCGCTATTGCAATTGACGTACACT
Leavenworthia alabamica LaSRK41 View TCTATCTCGCTATTGCAAATGACGTACATC
Leavenworthia stylosa LsSRK11 View TCTATATCGCTATTGCAAATGACGTACATT
Leavenworthia alabamica LaSRK25 View TCTATCTCGCTATTACAAATAACGTCCGCT
Leavenworthia crassa LcSRK08 View TCTATCTCGCTATTACAAATAACGTCCGCT
Leavenworthia stylosa LsSRK06 View TCTATCTCGCTATTACAAATAACGTCCGCT
Leavenworthia alabamica LaSRKa4 View TCTATCTCGATATTGCAACTGACGTCCGCT
Leavenworthia alabamica LaSRKr View TCTATCTCGATATTGCAACTGACGTCCGCT
Leavenworthia alabamica LaSRKtu View TCTATCTCGATATTGCAACTGACGTCCGCT
Leavenworthia alabamica LaSRK56 View TCTATCTCGATATTGCAAATAACGTCCGTT
Leavenworthia stylosa LsSRK05 View TCTATCTCGCTATTGCAAATGACGTACACT
Leavenworthia alabamica LaSRK38 View TCTATCTCGCTATTGCAATTGACGTTCCCT
Leavenworthia alabamica LaSRK52 View TCTATCTCGCTATTGCAATTGACGTCCATT
Leavenworthia alabamica LaSRK20 View TCTATCTCGCTGTTGCAATTGACGTCCGTT
Leavenworthia alabamica LaSRK55 View TCTATCTCGCTATTGCAATTGACTTCCACT
Leavenworthia alabamica LaSRK33 View TCTACCTCGCTATTGCAATTGACGACCGCT
Leavenworthia stylosa LsSRK07 View TCTATCTCGCTATTGCAATTGACGACCGCT
Leavenworthia uniflora LuSRK01a View TCTATATCTCTATTGAAGTTGACGAACGTT
Leavenworthia uniflora LuSRK01c View TCTATATCTCTATTGAAGTTGACGAACGTT
Leavenworthia alabamica LaSRK24 View TCTATCTCGCTATTGCGAATGAATTCCTTT
Leavenworthia alabamica LaSRK39 View TCTATCTCGCTATTGCGAATGAATTCTGCC
Leavenworthia alabamica LaSRK42 View TCTATCTCGCTATTGCAAATGAATTCTGCT
Arabidopsis halleri AhSRK01 View ACCTACTCAAGATTGAAGCTGAGTGACAAA
Arabidopsis lyrata AlSRK01 View ACCTACTCAAGATTGAAGCTGAGTGACAAA
Capsella grandiflora CgSRK03 View ACCTACTCAAGATTGACACTGAATCACGAA
Arabidopsis halleri AhSRK12 View ATCCTCTCAAGATTGACGGTGAGTTCATCT
Arabidopsis lyrata AlSRK42 View ATCCTCTCAAGATTGACGGTGAGTTCATCT
Arabidopsis lyrata AlSRK23 View ATCTACTCGAGATTGACAGTGAGTCCCACA
Arabidopsis halleri AhSRK03 View GTCTACGCGAAATTGACAATGAGATTCGAC
Arabidopsis lyrata AlSRK03 View GTCTACGCGAAATTGACAATGAGATTCGAC
Capsella grandiflora CgSRK01 View GTCTACGCGAAACTCACAATGAAATTCGAC
Capsella grandiflora CgSRK06 View GTCTACGCGAAATTGACAATGAAATTCGAC
Arabidopsis halleri AhSRK28 View TTCTACGCGAAATTAACGATGAGATTTGAG
Capsella grandiflora CgSRK24 View TTCTACGCGAGATTGACAATGAGATTCGAG
Capsella grandiflora CgSRK04 View GTCTACGCGAGAATGATGATGAATTTCGAC
Capsella grandiflora CgSRK09 View GTCTACGCGAAATTGACGATGAATTTCGAC
Arabidopsis halleri AhSRK08 View GCCTACGCGAGGTTGATGATGAATTCCGAT
Capsella grandiflora CgSRK08 View GTCTACGCGAGATTGATGATGGATTTTCAA
Arabidopsis halleri AhSRK23 View GTCTACGCGAGATTGACGATGGATTTCGAA
Arabidopsis halleri AhSRK19 View GCCTACGCGAGAATGACGATGGATTCCGAA
Arabidopsis halleri AhSRK09 View GTGTACTCGAGATTGATAATGAATTCCGAA
Capsella grandiflora CgSRK34 View GTCTACTCGAGATTGACGATGAATTCCGAT
Arabidopsis halleri AhSRK27 View ATGTACTCGAGATTCATACTGAATTCCAAT
Capsella grandiflora CgSRK05 View ACCTACTCGAGATTGACATTGAATTCGGAA
Arabidopsis lyrata AlSRK04 View ATCTACTCAAGATTGACAATGAGTTACTCT
Arabidopsis lyrata AlSRK33 View ATCTATTCGAGATTGACACTGAGTAACTTG
Arabidopsis halleri AhSRK20 View ATCTACTCGAGATTGACACTGAGTCACTCG
Arabidopsis halleri AhSRK11 View GTATACTCAAGATTGACAATGACTTCCTCA
Arabidopsis halleri AhSRK22 View ATCTACTCGAGATTGACATTAAGTGCCGCA
Arabidopsis lyrata AlSRK09 View ATCTACTCGAGATTGACAGTGAGTGCCGCA
Brassica oleracea BoSRK05 View ATCTACTCCAGATTGACACTCACTGAGTTC
Brassica rapa BrSRK29 View ATCTACTCCAGATTGACAGTCAGTGAGTTG
Brassica oleracea BoSRK02 View ATCTACTCCAGATTGACAGTCAGTGAGTTG
Brassica oleracea BoSRK15 View ATCTACTCCAGATTGACAGTCACTGACTAT
Capsella grandiflora CgSRK35 View ATATACTCGAGAGTGACAATTAGTGACTCA
Arabidopsis halleri AhSRK26 View ATCTATTCGAGAATAACATTGAGTTCTGCT
Arabidopsis lyrata AlSRK22 View ATCTATTCGAGAATAACATTGAGTTCTGCT
Arabidopsis halleri AhSRK18 View TCCTATTCCAGACTAAAAATGAGTACCTTA
Arabidopsis lyrata AlSRK39 View TCCTATTCCAGACTAAAAATGAGTACCTTA
Arabidopsis halleri AhSRK16 View TCATACTCCAGATTGAAAATGAGTTTCTCA
Arabidopsis halleri AhSRK07 View TTCTACTCCAAATTAACAATGAGTTACACA
Arabidopsis halleri AhSRK24 View ATCTACTCGAGATTTACAATGAGTTCCACA
Arabidopsis lyrata AlSRK20 View ATCTACTCGAGATTTACAATGAGTTCCACA
Arabidopsis halleri AhSRK13 View ATCTACTCAAGATTAACAATGAGTTCCTCA
Arabidopsis lyrata AlSRK35 View ATATACTCAAGATTGATATTAAGTTCCTCA
Capsella grandiflora CgSRK02 View ACATACTCGAGATTAATACTAAGTTCCTCA
Arabidopsis halleri AhSRK15 View ATATACTCGAGACTGACCCTGACTCCCTCA
Arabidopsis halleri AhSRK05 View GCATACTCGAGATTGACAGTGGCTCCCTCA
Arabidopsis lyrata AlSRK34 View GCATACTCGAGATTGACAGTGGCTCCCTCA
Arabidopsis lyrata AlSRK43 View ATCTACTCAAGATTGACAATGACTCCAGCA
Capsella grandiflora CgSRK14 View ATCTACTCAAGATTGACAATGACTCCATTT
Arabidopsis lyrata AlSRK30 View ATCTTATCGAGATTGACATTGAGTCCCCTA
Capsella grandiflora CgSRK37 View ATCTACTCGAGATTGACAATGAGTCCCGCT
Arabidopsis lyrata AlSRK19 View ATCTACTCGAGATTGACAATGAGTTCCTCA
Brassica oleracea BoSRK13 View TTCTACTCGATACTAACAATAAGTTCCACG
Brassica rapa BrSRK08 View TTCTACTCGAGATTGACAATAAATTCTGAA
Brassica oleracea BoSRK01 View TTCTACTCGAGATTGATAATAAGTTCCGAA
Brassica oleracea BoSRK07 View TTCTACTCGAGATTAAAATTAAGTTCCGAA
Brassica rapa BrSRK46 View ATCTACTCGAGATTAAAATTAAGTTCCGAT
Brassica oleracea BoSRK18 View ATTTACTCGAGATTGATAATAAGTTCCGAA
Brassica rapa BrSRK52 View ATTTACTCGAGATTGATAATAACTTCCGAA
Brassica rapa BrSRK9 View ATCTACTCAAGATTGACAATAAATTTCTCA
Brassica oleracea BoSRK29 View ATCTACTCGAGATTGACAATAAGTTCCGAA
Brassica oleracea BoSRK24 View ATCTACTCGAAATTGACAATAAATTCGGAA
Brassica rapa BrSRK36 View ATCTACTCGAAATTGACAATAAATTCGGAA
Brassica rapa BrSRK32 View ATCTACTCGAGATTGACAATAAGTTCGGAT
Brassica oleracea BoSRK35 View TTCTACTCGCGATTGACAATAAGTTCCGAA
Brassica oleracea BoSRK23 View ATCTACTCGAGATTGACAATAAGCTCCTCA
Brassica oleracea BoSRK20 View ATTTACTCGAAATTGACAGTAAGTGTCTCA
Brassica oleracea BoSRK36 View ATCTACTCGAAGTTGACAGTAAGTTTCTCA
Capsella grandiflora CgSRK36 View ATCTACTCGAAAATAACACTAAGTGTCTCA
Brassica oleracea BoSRK03 View ATTTACTCGAGACTGACAGTAAGTTTCTTA
Brassica oleracea BoSRK57 View ATGTATACGAGATTGACAGTAAGTTTCTCA
Brassica oleracea BoSRK65 View ATCTACTCGAGATTGACAGTAAGTTTCTCA
Brassica oleracea BoSRK16 View ATCTACTCGAGATTGATAGTAAGTTTCTCA
Brassica rapa BrSRK45 View ATCTACTCGAGATTGATAGTAAGTTCAGAA
Brassica oleracea BoSRK58 View ATTTACTCGAGATTGATGCTAAGTTTCTCA
Brassica oleracea BoSRK08 View TTGTACTCGAGATTGACAGTAAGTTCAGAA
Brassica rapa BrSRK27 View ATCTACTCGAGATTGACAGTAAGTTCAGAA
Brassica oleracea BoSRK33 View TTTTACTCGAGATTGACAGTAAGTTCCTCA
Brassica oleracea BoSRK06 View TTCTACTCGAGATTGACACTAATTTCCGAA
Brassica oleracea BoSRK39 View ATCTACTCGAGACTGACACTAGGTTTCTCA
Brassica oleracea BoSRK64 View ATCTATTCGAGATTGACACTAATTTCCAAA
Brassica rapa BrSRK41 View ATCTACTCGAGATTGACACTAAGTTCCAAA
Brassica rapa BrSRK30 View ATCTACTCTAGATTGACAATAAATTCCGCA
Capsella grandiflora CgSRK47 View ATCTACTCGAGATTGACACTAAGTTCCGAA
Brassica rapa BrSRK49 View ATCTACTCGATATTGACAGTAAGCTCCGAA
Brassica oleracea BoSRK11 View ATCTACTCGAGATTGACAATAAGTTTCGAA
Brassica oleracea BoSRK50 View TTTTACTCGAGACTGAAAATAAGTCCCGAA
Brassica rapa BrSRK33 View ATCTACTCGAGATTGACCATAAGTTCCGAA
Brassica rapa BrSRK48 View ATCTACTCGAGACTGAAAATCAATTCCGAA
Brassica rapa BrSRK34 View ATCTACTCGAGATTGAAAATAAATTCCGAT
Brassica oleracea BoSRK38 View ATCTACTCGATATTGAAAGTAAGTTCCGAT
Brassica rapa BrSRK26 View ATCTACTCGAGATTGAAAGTAAGTTCCGAA
Brassica oleracea BoSRK25 View ATCTACTCGAGATTGAAAGTAAGTTCCGAA
Brassica oleracea BoSRK45 View ATCTACTCGAGATTGAAAATAAGTTCTGAA
Brassica rapa BrSRK22 View ATCTACTCGAGATTGAAAATAAGTTCTAAA
Brassica oleracea BoSRK51 View ATTTACTCGAGAATTCAAATAAGTCCCGAA
Brassica rapa BrSRK12 View ATTTACTCGAGAATTCAATTAAGTCCAGAA
Brassica rapa BrSRK37 View ATTTACTCGAGAATTCAAATGAGTTCCGAA
Brassica rapa BrSRK99 View ATTTACTCGAGATTGGAAATAAATTCCGAC
Brassica oleracea BoSRK62 View ATCTATTCGATATTGAAAGTAAGTTCCGGA
Brassica rapa BrSRK35 View ATCTACTCGAGATTGACATTAAGTTCCGAA
Brassica oleracea BoSRK60 View ATCTACTCGAGACTGAAAGTAAGTTCCGAC
Brassica rapa BrSRK54 View TTCTACTCGAGATTGAAAGTAAGTTCCGAC
Arabidopsis halleri AhSRK02 View GTCTACTCTAGACTCACAATAAATTCTGAT
Capsella grandiflora CgSRK18 View CTCTACTCGAGACTGACAATAAACTCCGAT
Arabidopsis halleri AhSRK04 View TTCTACTCAAGATTGACAATAAATACCGTA
Arabidopsis lyrata AlSRK37 View TCCTACTCAAGATTGACAATAAATACCGTA
Arabidopsis halleri AhSRK06 View TTCTACTCGAGATTGACAATAAGTATCGTA
Arabidopsis lyrata AlSRK21 View TTCTACTCGAGATTGACAATAAGTATCGTA
Arabidopsis lyrata AlSRK16 View CTCTACTCGAGATTGACAATAAATAGCGCC
Capsella grandiflora CgSRK11 View TTTTATTCGAGATTGACCATTAATAGTGTT
Arabidopsis halleri AhSRK30 View CTCTACACGAGATTGACAATAAATAGCGTA
Arabidopsis halleri AhSRK17 View CTCTACGCGAGATTGACAATAAATTCCGTA
Arabidopsis halleri AhSRK14 View CTCTACTCGAGATTGACAGTAAATTCCGAT
Arabidopsis lyrata AlSRK05 View CTCTATTCGAGATTGAAAATAAACTCCGAC
Arabidopsis halleri AhSRK25 View CGGTACTCAATATTGAGATTAAATTCCGAT
Leavenworthia alabamica LaSRK View CGCTACTCGAGATTGGTATTAAATTCCGAA
Arabidopsis halleri AhSRK29 View CTCTACTCGAGATTGACAATAAATTATGCG
Arabidopsis lyrata AlSRK13 View CTCTACTCGAGATTGACAATAAATTACGCG
Arabidopsis lyrata AlSRK44 View ATCTACTCGAGATTGCAAATGAGTCCCTCA
Arabidopsis lyrata AlSRK46 View ATCTACTCGAGATTGACAATGAGTCCTACA
Leavenworthia alabamica LaSRKb View CGCTACTCCAGACTGATATTAAATTCTGAC

Columns

None of the columns has a description.