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Citation
Taxa
Matrices
Trees
Analyses
Matrix 1381 of Study 1326
Citation title: "The phylogenetic affinities of two mysterious monotypic mimosoids from southern South America".
This study was previously identified under the legacy study ID S1250
(Status: Published).
Matrices
Title: mimozy cpDNA
Description: Legacy TreeBASE Matrix ID = M2180
Rows
| Taxon Label | Row Segments | Characters 1?–30 |
|---|---|---|
| Acacia adoxa | (none) | ???ACAATTGGATAGCGTACATCATCCC?? |
| Acacia alata | (none) | ?????????????AGCGTACATCATCCC?? |
| Acacia ampliceps | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Acacia berlandieri | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Acacia boliviana | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Acacia caven | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Acacia cochliacantha | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Acacia colei | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Acacia constricta | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Acacia drummondii | (none) | GTCGCAATTGGATAGCGTACATCATCCC?? |
| Acacia elata | (none) | ?AAGAAAATGGATAGCGTACATCATCCC?? |
| Acacia euthycarpa | (none) | ?TTGCAAGCGGATAGCGTACATCATCCC?? |
| Acacia farnesiana | (none) | ????????????GAGCGTACATCATCCC?? |
| Acacia glomerosa | (none) | GTCGCAATTGGATAGCGTACATCATCCC?? |
| Acacia karoo | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Acacia longifolia | (none) | ????????????????GTACATCATCCC?? |
| Acacia lycopodifolia | (none) | ????????TGGATAGCGTACATCATCCC?? |
| Acacia mearnsii | (none) | ?????????????AGCGTACATCATCCC?? |
| Acacia melanoxylon | (none) | ??????????????????ACATCATCCC?? |
| Acacia modesta | (none) | CTCGCAATTGGATAGCGTATATCATCCC?? |
| Acacia neovernicosa | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Acacia nilotica | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Acacia platycarpa | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Acacia pulchella | (none) | ??????????????????ACATCATCCC?? |
| Acacia roemeriana | (none) | ????????GTGCCA{AC}CGCACATGATCC |
| Acacia schottii | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Acacia schweinfurthii | (none) | ????????GTGCCT?CCCACATCATCCC?? |
| Acacia senegal | (none) | CTCGCAATTGGATAGCGTATATCATCCC?? |
| Acacia spinescens | (none) | ?????????????AG?GTACATCATCCC?? |
| Acacia tortilis | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Acacia translucens | (none) | ????CAATTGGATAGCGTACATCATCCC?? |
| Acacia tumida | (none) | ??????ATTGGATAGCGTACATCATCCC?? |
| Acacia visco | (none) | ????????GTGCCTGCC?AC?TGATCCC?? |
| Adenanthera pavonina | (none) | ????CA?CTG?ATAGCGTACATCATCCC?? |
| Alantsilodendron alluaudianum | (none) | ?????A?TTGGATAGCGTACATCATCCC?? |
| Alantsilodendron humbertii | (none) | ???????????ATAGCGTACATCATCCC?? |
| Alantsilodendron pilosum | (none) | -----CTATGGATAGCGTACATCATCCC-- |
| Albizia adinocephala | (none) | CTCGCAATTGGATAGCGTACATCATCAC?? |
| Albizia harveyi | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Albizia kalkora | (none) | CTCGCAATTGGATAGCGTACAGCATCCC?? |
| Albizia plurijuga | (none) | CTCGCAATTGGATAGTGTACATCATCCC?? |
| Albizia sinaloensis | (none) | CTCGCAATTGGATAGCGTACATCATCAC?? |
| Albizia tomentosa | (none) | CTCGCAATTGGATAGCGTACATCATCAC?? |
| Albizia versicolor | (none) | ------------------------------ |
| Amblygonocarpus andongensis | (none) | ????CCT?T?GATAGCGTACATCATCCC?? |
| Anadenanthera colubrina JM | (none) | CTCGCAATTGGATAGCGTACATCATCTC?? |
| Anadenanthera colubrina var. cebil | (none) | CTCGCAATTGGATAGCGTACATCATCTC?? |
| Anadenanthera peregrina | (none) | ??????ATTGGATAGCGTACATCATCCC?? |
| Calliandra carbonaria | (none) | ???ACAATTGGATAGCGTATGTCATTCC?? |
| Calliandra longepedicellata | (none) | ------------------------------ |
| Calliandra physocalyx | (none) | ------------------------------ |
| Calliandra pittieri | (none) | ???ACAATTGGATAGCGTACGTCATTCC?? |
| Calliandra surinamensis | (none) | ------------------------------ |
| Calliandropsis nervosus | (none) | ??????????????????ACATCATCCC?? |
| Calpocalyx dinklagei | (none) | ???GCAATTGGATAGCGTACATCAACCC?? |
| Calpocalyx heitzii | (none) | ?????????????AGCGTACATCAACCC?? |
| Cathormion umbellatum | (none) | ???????????????????????ATCCC?? |
| Cedrelinga cataeniformis | (none) | ???ACAATTGGATAGCGTACATCATCCC?? |
| Cercidium | (none) | CTCGCAATTGGATAGCGTACAGCATCCC-- |
| Cercidium praecox | (none) | CTCGCAATTGGATAGCGTACATCATCCC-- |
| Chloroleucon mangense | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Cojoba catenata | (none) | ---------------CGTACATCATCCC-- |
| Cylicodiscus gabunensis | (none) | -------TTGGATAGCGTACATCATCCC-- |
| Delonix regia | (none) | CTCGCAATTGGATAGCGTATATCATCCC?? |
| Desmanthus acuminatus | (none) | ???GCAATTGGATAGCGTACATCATCCC?? |
| Desmanthus balsensis | (none) | ?TCGCAATTGGATAGCGTACATCATCCC?? |
| Desmanthus bicornutus | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Dichrostachys paucifoliolata | (none) | ????CAATTGGATAGCGTACATCATCCC?? |
| Dichrostachys richardiana | (none) | ????CAATTGGATAGCGTACATCATCCC?? |
| Dichrostachys spicata | (none) | ???GCAATTGTATAGCGTATATCATCCC?? |
| Dichrostachys unijuga | (none) | ????CAATTGGATAGCGTACATCATCCC?? |
| Dichrostachys venosa | (none) | ??????ATTGGATAGCGTACATCATCCC?? |
| Dimorphandra conjugata | (none) | ????AAATTGGATAGCGTACATCATCCC?? |
| Dimorphandra mollis | (none) | ---------------??AAC?TCATCCC-- |
| Dinizia excelsa | (none) | ??????????TGTAGCGTACATCATCCC?? |
| Ebenopsis ebano JM | (none) | CTCGCAATTGGATAGCGTACATCATCGTCC |
| Ebenopsis ebano ML | (none) | ---------------CGTACATCATCGTCC |
| Elephantorrhiza elephantina | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Entada abyssinica | (none) | ---GCAATTGGATAGCGTACATCATCCC-- |
| Entada rheedii | (none) | ??GGCAATTGGATAGCGTACATCATCAC?? |
| Enterolobium contortisiliquum | (none) | CTCGCAATTGGATAGCGTACATCATC???? |
| Enterolobium cyclocarpum | (none) | ?????AATTGGATAGCGTACATCATC???? |
| Erythrophleum suaveolens | (none) | ---------------?TGACATCATCCC-- |
| Faidherbia albida JM | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Faidherbia albida 337 | (none) | ------------------------------ |
| Fillaeopsis discophora ML | (none) | ?????????????????????TCCTCCC?? |
| Fillaeopsis discophora Sosef | (none) | -----------ATAGCGTACATCATCCC-- |
| Gagnebina bakoliae | (none) | ????{AC}{CG}??{GT}{GT}G{GT}TA{ |
| Gagnebina bernieriana | (none) | ----GAATTGGATAGCGTACCTCATCCA-- |
| Gagnebina commersoniana | (none) | ?????{AC}?TTGGATAGCGTACATCATCC |
| Gagnebina pervilleana | (none) | ???GCAATTGGATAGCGTACATCATCCA?? |
| Gagnebina pterocarpa | (none) | ????CA?TTGGA?A?CGTACATCATCCC?? |
| Havardia albicans | (none) | CTCGCAATTGGATAGCGTACATCATCGTTT |
| Havardia pallens | (none) | ?????AATTGGATAGCGTACATCATCGTTT |
| Inga edulis | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Kanaloa kaloowaense | (none) | ???????????ATAGCGTACATCATCCC?? |
| Leucaena greggii | (none) | ?????ATT?G?TTGCCGTACAGCATCCC?? |
| Leucaena leucocephala JM | (none) | CTCGCAATTGGATAGCGTACAGCATCCC?? |
| Leucaena leucocephala ML | (none) | ??????????????????ACAGCATCCC?? |
| Lysiloma acapulcense | (none) | ???????????ATAGCGTACATCATTCC?? |
| Lysiloma divaricatum | (none) | ????CAATTGGATAGCGTACAGCATCCC?? |
| Lysiloma tergeminum | (none) | CTCGCAATTGGATAGCGTACAGCATCCC?? |
| Microlobius foetidus JM | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Microlobius foetidus ML | (none) | ?????????????AGCGTACATCATCCC?? |
| Mimosa aculeaticarpa | (none) | ???GCAACTGGATAGCGTGCATCATCCC?? |
| Mimosa albida var. wildenowii | (none) | ???CAAATTGGATAGCGTACATCATCCC?? |
| Mimosa quitensis | (none) | ???GCAATTGGATAGCGTACATCATCCC?? |
| Mimosa tenuiflora | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Mimozyganthus carinatus Fort7575 ML4484 | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Mora gonggiypii | (none) | ???GCAATTGGATAGCGTTCATCATCCC?? |
| Neptunia gracilis | (none) | ??????????????????ACATCATCCC?? |
| Neptunia monosperma JM | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Neptunia monosperma ML | (none) | ?????????????AGCGTACATCATCCC?? |
| Newtonia buchananii | (none) | ??????????????GCGTACATCATCCC?? |
| Newtonia hildebrandtii | (none) | ???????????????CGTACATCATCCC?? |
| Pachyelasma tessmanii | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Parapiptadenia rigida | (none) | ??????????TGTAGCGTACATCATCCC?? |
| Pararchidendron pruinosum | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Paraserianthes lophantha | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Parkia biglandulosa | (none) | ??????????????????ACATCATCCC?? |
| Parkia speciosa | (none) | ???GCAATTGGATAGCGTACATCATCCC?? |
| Parkia timoriana | (none) | ?TCGCAATTGGATAGCGTACATCATCCC?? |
| Parkinsonia | (none) | ---------------CGTACATCATCCC-- |
| Peltophorum pterocarpum | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Pentaclethra eetveldtiana | (none) | ------------------ACATCATCCC-- |
| Pentaclethra macrophylla AB | (none) | ???GCAATTAGATAGCGTACATCATCCC?? |
| Pentaclethra macrophylla ML | (none) | ???????????????????????CTCCC?? |
| Piptadenia moniliformis | (none) | ???GCAATTGGATAGCGTACATCATCCC?? |
| Piptadenia obliqua | (none) | --------TGGATAGCGTACATCATCCC-- |
| Piptadenia viridiflora | (none) | ----CAATTGGATAGCGTGCATCATCTC-- |
| Piptadeniastrum africanum | (none) | ??????ATTGGATAGCGTACATCATCCC?? |
| Piptadeniopsis lomentifera | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Plathymenia reticulata | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Prosopidastrum angusticarpum | (none) | ---------------CGTACATCATCCC-- |
| Prosopis elata | (none) | ---------------CGTAC?TCATCCG-- |
| Prosopis nigra | (none) | ---------------CGTAC?TCATCCG-- |
| Prosopis pallida | (none) | TAGATAATTGGATAGCGTACATCATCCG?? |
| Prosopis rojasiana | (none) | ---------------CGTAC?TCATCCG-- |
| Pseudoprosopis gilletii | (none) | ----CAATTGGATAGCGTACATCAACCC-- |
| Pseudosamanea guachapele | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Samanea saman | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Schleinitzia insularum | (none) | ????????TGGATAGCGTACATCATCCC?? |
| Sclerolobium sp | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Stryphnodendron cf. coriaceum | (none) | CTCGCAATTGGATAGCGTACATCATCCC?? |
| Stryphnodendron porcatum | (none) | ---------------CGT?C?TCATCCC-- |
| Tetrapleura tetraptera BNBG | (none) | ????????????TAGCGTACATCATCCC?? |
| Tetrapleura tetraptera Sosef | (none) | ----CAATTGGATAGCGTACATCATCCC-- |
| Xylia africana | (none) | CTCGCAATTGGATAGCGTACATCAACCC-- |
| Xylia hoffmannii | (none) | ---------------CGTACATCAACCC-- |
| Zapoteca formosa | (none) | ---------------CGTACATCATCCC-- |
| Zapoteca tetragona | (none) | CTCGCAATTGAATAGTGTACATCATCCC?? |
| Zygia lathetica | (none) | ---------------CG?AC?TCATCCC-- |
| Zygia longifolia | (none) | ------------------------------ |
Columns
| Column | Character Description |
|---|---|
| 25 | d |
| 42 | d |
| 76 | d |
| 116 | d |
| 204 | d |
| 214 | d |
| 329 | d |
| 368 | gap 273-277 |
| 369 | gap 273-277 |
| 370 | gap 299-302 |
| 371 | gap 297-306 |
| 372 | gap 325-331 |
| 373 | gap 364 |
| 374 | gap 364-371 |
| 375 | gap 400-405 |
| 376 | gap 474 |
| 377 | gap 477-509 |
| 378 | gap 482-501 |
| 379 | gap 549-585 |
| 380 | gap 544-611 |
| 381 | gap 595-601 |
| 382 | gap 613-615 |
| 383 | gap 646-648 |
| 384 | gap 680-686 |
| 385 | gap 756 |
| 386 | gap 740 |
| 387 | gap 776-796 |
| 388 | gap 823-827 |
| 389 | gap 836-849 |
| 390 | gap |
| 391 | ? |
| 392 | ? |
| 393 | gap976-980 |
| 394 | gap 1033-1075 |
| 395 | gap 1066-1086 |
| 396 | gap 1149-1168 |
| 397 | gap 1022-1026 |
| 398 | gap 1178-1183 |
| 399 | gap 1191-1195 |
| 400 | gap 1210-1216 |
| 401 | gap 1248 |
| 402 | gap 1264-1268 |
| 403 | gap 1297-1301 |
| 404 | 300 bp deletion |
| 850 | gap 757 |
| 851 | gap 747 |
