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Matrix 1389 of Study 1330

About Citation title: "Mosaics of Convergences, Noise and Misleading Morphological Phylogenies: what's in a Viverrid-like Carnivoran?".
About This study was previously identified under the legacy study ID S1255 (Status: Published).

Matrices

Title: Appendices I and II

Description: Legacy TreeBASE Matrix ID = M2193

Rows

Taxon Label Row Segments Characters 1?–30
Macrogalidia musschenbr  (none) 110011201001000010210111212020
Paradoxurus zeylonensis  (none) 200011201001010010210111122020
Hemigalus derbyanus  (none) 100010201001000000310012102020
Cynogale bennettii  (none) 111011201101010011311012102020
Diplogale hosei  (none) 110010200001000000310012122020
Chrotogale owstoni  (none) 000020201001000000310013122020
Hyaena brunnea  (none) 000010001000000101210001111020
Proteles cristatus  (none) 000011201101020201211020111120
Herpestes ichneumon  (none) 100000111000020220310002222020
Nandinia binotata  (none) 200010001101010010210113122020
Cryptoprocta ferox  (none) 101010001111220110110102102021
Fossa fossana  (none) 000010001101100100210013102020
Eupleres goudotii  (none) 000011201101120010210013011020
Civettictis civetta  (none) 001010000101000100210011102020
Viverra zibetha  (none) 001010001101000100210011100020
Viverra civettina  (none) 101010201101000100210012102020
Viverra tangalunga  (none) 101011201101000100210010100020
Viverricula indica  (none) 101100010100020110210012102020
Viverra megaspila  (none) 001010001101000100210012102020
Genetta johnstoni  (none) 201110011101000110210012102020
Genetta maculata  (none) 201110011101000110210012102020
Genetta thierryi  (none) 201110011101000110210013122020
Genetta tigrina  (none) 201110011101000110210012102020
Genetta victoriae  (none) 201110011101000110210011102020
Genetta servalina  (none) 101110011101000110210012102020
Genetta abyssinica  (none) 201110011101000110210012122020
Genetta angolensis  (none) 201110011101000110210012102020
Genetta genetta  (none) 201110011101000110210012102020
Osbornictis piscivora  (none) 210110011101000110210012110020
Prionodon linsang  (none) 200110000101010020210113122020
Prionodon pardicolor  (none) 200110000101010010210113122020
Poiana richardsoni  (none) 200110000101000110210012122020
Arctictis binturong  (none) 100021201011110200110111202120
Arctogalidia trivirgata  (none) 201011200001000010210111202020
Paguma larvata  (none) 101011201001000210210111112020
Paradoxurus herma  (none) 100011201001000010210111102020
Paradoxurus jerdoni  (none) 100011201001000010210111102020
Mungos mungo  (none) 100000111000020210210002202020
Galidia elegans  (none) 200001010110120110210002102021
Felis bengalensis  (none) 201010011002020120000102102010
Lynx lynx  (none) 200010010002000120000101112011
Canis aureus  (none) 000000000000001000000000000000
Bassariscus astutus  (none) 200010010100211110000000000010
Ursus americanus  (none) 301001010000211110000001202021

Columns

Column Character Description
1 Maxilla, infraorbital foramen (position of the anterior opening of the infraorbi
2 Maxilla, infraorbital foramen, overall size
3 Maxilla, infraorbital foramen, shape
4 Maxilla, infraorbital foramen
5 Maxilla, infraorbital foramen, ventral border
6 Maxilla, infraorbital foramen, ventral border, relative position
7 Maxilla, infraorbital foramen, dorsal border
8 Maxilla, anterior alveolar foramen - A small foramen that lies within the infrao
9 Maxilla, antorbital fossa - The antorbital fossa is on the rostrum and directly
10 Maxilla, nasolabialis fossa - This fossa lies on the ventral root of anterior su
11 Nasals, proportional dimensions - Length measured at suture; width measured as w
12 Nasals, posterior extension between frontals
13 Nasals, width
14 Nasals and frontals, midline depression
15 Maxilloturbinals
16 Frontals, inflation anterior to the postorbital processes
17 Rostrum, dorsal profile
18 Rostrum, ?trough? - This is caused by the retraction of the nasals, creating a s
19 Palate, anterior palatine foramina (= posterior palatine foramina of Crouch, 196
20 Palatine-maxilla, anterior palatine foramina
21 Palate, width, posterior to the canines - Measured as the buccal width at the ca
22 Palate, tooth rows, lingual edge
23 Palatal surface
24 Palatine-maxilla suture
25 Palatine, mesopterygoid palate - The mesopterygoid palatal region is here unders
26 Palatine, relative size (excluding mesopterygoid)
27 Palatine, relative size (including mesopterygoid)
28 Palatine, mesopterygoid region
29 Palatine, mesopterygoid region - To understand this feature, the palate must be
30 Palatine, post palatal notch - This refers to the anterior emargination between
31 Palatine, extension of palate posterior to the tooth row - This refers to the po
32 Premaxilla, incisive foramina (= anterior palatine foramina of Crouch, 1969) - S
33 Premaxilla-maxilla suture (midline) (Qiu, 1987)
34 Premaxilla, Stenos foramen (posterior edge) - Steno?s foramen appears in some ma
35 Vomer, attachment to palate
36 Orbit, anterior margin - Coding based on holding the palate horizontal-level.
37 Alisphenoid, foramen rotundum - Serves for the passage of the maxillary division
38 Alisphenoid, foramen rotundum
39 Alisphenoid, (alar) canal (Flynn et al., 1988) - Work by Novacek (1977, 1986) an
40 Alisphenoid-frontal muscle ridge
41 Alisphenoid, optic foramen interorbital connection - In some species, there is a
42 Frontal, supraorbital process
43 Frontal-parietal suture (at midline) - Baseline is a vertical line through the g
44 Frontal, temporal crest - Serves for the attachment of m. temporalis that raises
45 Frontal, postorbital region (width)
46 Frontal, interorbital inflation
47 Frontal, postorbital inflation
48 Postorbital constriction position - The postorbital constriction would be the po
49 Jugal
50 Jugal-maxilla, posterioventral process - Serves for the attachment of the masset
51 Jugal, dorsal postorbital process
52 Jugal, exposure on interorbital surface
53 Lacrimal
54 Lacrimal, inferior oblique muscle fossa
55 Inferior oblique muscle fossa
56 Orbitosphenoid, anterior ?process?
57 Orbitosphenoid, shape
58 Orbitosphenoid, sphenorbital fissure size
59 Maxilla, intraorbital wing
60 Maxilla, posterior border of zygomatic process
61 Maxilla, anterior edge of orbit
62 Maxilla, orbital process - The maxilla expands outward in a horizontal plane in
63 Palatine, orbital process
64 Palatine, sphenopalatine foramen - Serves for the passage of the sphenopalatine
65 Palatine, location of the sphenopalatine foramen (= orbitonasal foramen of Butle
66 Palatine, sphenopalatine foramen - Serves for the passage of the sphenopalatine
67 Palatine, orbital wing
68 Palatine, orbital exposure
69 Pterygoid, epipterygoid processes - Serves for the attachment of m. pterygoid me
70 Pterygoid, hamular process
71 Alisphenoid, foramen ovale (position) - Comparisons made to the posteriormost ed
72 Alisphenoid canal, anterior opening (foramen rotundum) - Comparisons made while
73 Basioccipital, hypoglossal foramen (= condyloid foramen of Hunt, 1987; Flynn et
74 Basioccipital, posterior lacerate foramen (= jugular) - Serves for the passage o
75 Basioccipital, muscle fossa - Serves for the insertion of m. rectus capitis vent
76 Basioccipital, m. longus capitis rugosity
77 Basioccipital, contact with entotympanic bullae
78 Basioccipital width (between bullae at midpoint)
79 Basisphenoid, medial lacerate foramen - Serves for the passage of the ascending
80 Basisphenoid, posterior opening of the vidian canal - In the space between the p
81 Squamosal, postglenoid foramen (Hough, 1948; Neff, 1983; Flynn et al., 1988) - F
82 Squamosal, postglenoid process - Reference point is posteriormost surface of gle
83 Squamosal, infrasquamosal fossa - The infrasquamosal fossa is the portion of the
84 Squamosal, lateral extension
85 Ectotympanic-entotympanic division - In the viverrids, the point of contact betw
86 Ectotympanic, ring, medial expansion (Hunt, 1987; Neff, 1983)
87 Ectotympanic, ring, lateral expansion (external auditory meatus) (Hunt, 1987; Ne
88 Ectotympanic, ring, inclination
89 Ectotympanic, inflation, form
90 Ectotympanic, direct ventral inflation to meatal tube
91 Ectotympanic, septum (Hunt, 1987)
92 Ectotympanic, styliform process - Anteromedial and ventral to the eustachian tub
93 Ectotympanic, eustachian tube
94 Ectotympanic, anteromedial process - The anteromedial process is on the anterome
95 Ectotympanic, external auditory meatus
96 Entotympanic, relative inflation (Hunt, 1987)
97 Entotympanic, ventral pseudoseptae
98 Entotympanic, septum
99 Entotympanic, septum - Hunt (1987) contrasted Nandinia with no true internal sep
100 Entotympanic, carotid canal, posterior opening (Flynn et al., 1988)
101 Entotympanic, course of the internal carotid - Hunt (1987) coded herpestids and
102 Entotympanic ossification - Flynn et al. (1988) listed ?0? as a synapomorphy for
103 Entotympanic, rostral (Hunt, 1987) - Hunt (1987) established polarity on this fe
104 Entotympanic, lateral expansion
105 Entotympanic, anterior extension
106 Entotympanic, antero-medial extension
107 Entotympanic, carotide canal, anterior opening
108 Petrosal, laterally directed mastoid pocket, middle ear cavity (Hunt, 1987)
109 Petrosal, ventral promontorial process (Hunt, 1987)
110 Petrosal, posteromedial extension (Hunt, 1989)
111 Petrosal, mastoid, petramastoid ridge - Origin of m. digastricus which opens the
112 Petrosal, inferior petrosal sinus (petrobasilar canal) - Closely related to the
113 Petrosal, subarcuate (floccular) fossa - The subarcuate (floccular) fossa is a l
114 Petrosal, fenestra cochleae (round window)
115 Petrosal, basal whorl of cochlea
116 Petrosal, mastoid, exposed ventrolateral process
117 Petrosal, mastoid, occipital exposure
118 Petrosal, mastoid, mastoid foramen
119 Dorsal pseudoseptae
120 Petrosal, fossa muscularis major (tensor tympani fossa) - Origin of m. tensor ty
121 Petrosal, promontorium (Hunt, 1989)
122 Paroccipital process (Neff, 1983; Hunt, 1987; Flynn et al., 1988) - Origin of m.
123 Paroccipital process, width (Petter, 1974; Veron, 1995)
124 Ossicles, malleus, anterior (long) process
125 Ossicles, malleus, processus gracilis and anterior lamina
126 Ossicles, malleus, head
127 Ossicles, malleus, head articulation surface, upper facet
128 Presphenoid, shape
129 Vagina processus hyoideus
130 External auditory meatus, dorsal wall
131 Internal carotid artery (Neff, 1983)
132 Arterial circulation, intracranial rete (Bugge, 1978)
133 Arterial circulation, major a1 arterial shunt (Bugge, 1978)
134 Arterial circulation, major a4 arterial shunt (Bugge, 1978; Neff, 1983; Wozencra
135 Arterial circulation, major anastomosis X (Bugge, 1978; Wozencraft, 1989)
136 Arterial circulation, major anastomosis Y (Bugge, 1978; Wozencraft, 1989)
137 Arterial circulation, major a2 arterial shunt (Bugge, 1978; Wozencraft, 1989)
138 M. sternomastoideus and m. cleidomastoideus fossa (location)
139 Sternomastoideus and cleidomastoideus fossa
140 Bullar configuration (Hunt, 1987)
141 Exoccipital, condyloid canal (occipital venous sinus) - Serves for the passage o
142 Supraoccipital
143 Condyles, emarginated causing the condyle to appear slightly lobed
144 Parietal, sagittal crest (adult males)
145 Parietal-supraoccipital, lambdoidal crest
146 Parietal, sagittal crest
147 Parietal-supraoccipital, lambdoidal crest, caudal view
148 I2 position (posterior edge)
149 I3, form (cross section)
150 I3, size
151 I1-I3, projection
152 I1-I3 formation
153 I1-I3 formation
154 I3-C1 occlusion
155 C1, size
156 C1, flanges
157 C1, shape
158 P1
159 P1-1, relative size
160 P1, number of roots
161 P1
162 P2, number of roots
163 P2, roots
164 P3, number or roots
165 P3, posterolingual cingulum
166 P3, lingual cusp
167 P3-3, size (when viewed from the buccal aspect)
168 P3, roots
169 P3, talonid
170 P4, number of cusps
171 P4, roots
172 P4, parastyle
173 P4, metacone or metastylar blade
174 P4, lingual lobe
175 P4, talon
176 P4, metastyle blade
177 P4, posterolingual cingulum
178 P4, talonid
179 P4, posterior accessory cusps - Flynn and Galiano (1982) considered P4 well deve
180 Carnassial shear, P4-M1 (well defined vertical facet) (Flynn and Galiano, 1982)
181 P4-M1 carnassial embrasure pit
182 M1, shape
183 M1, roots
184 M1, hypocone
185 M1, buccal lobes
186 M1, trigonid (or equivalent)
187 M1, trigonid
188 M1, talonid
189 M1, metaconid
190 M1, protoconid
191 M1, entoconid
192 M1, hypoconid
193 M1, hypoconulid
194 M1, small cusp between hypoconid and protoconid
195 M2, paracone and metacone
196 M2
197 M2, hypocone
198 M2, roots
199 M2, shape
200 M2
201 M2, roots
202 M2, cusps
203 M2- M2 relative size
204 M3
205 Upper molars, cingulum
206 Buccal cingulum, upper molars
207 Diastema, I2 - I3
208 Diastema, C1 - P1 (or to first postcanine tooth)
209 Diastema, P2 - P3 (or second and third postcanine teeth)
210 Diastema, P1 - P2 (or first two postcanine teeth)
211 Mandible, angular process
212 Mandible, mandibular symphysis
213 Mandible, mandibular condyle - Alveolar line defined as a line connecting the an
214 Mandible, medial shelf of angular process
215 dP3, number of accessory posterior cusps
216 dP3 talonid
217 dP3, lingual cusp
218 dP4, buccal lobes
219 dP3, accessory lingual cusp
220 Mental foramina
221 P4, anterior accessory cusp
222 Atlas, transverse process, posterior extension - M. levator scapulae attaches to
223 Atlas, alar and atlantal (intervertebral) foramen
224 Atlas, ventral arch, length
225 Atlas, transverse foramen (vertebral artery), posterior opening
226 Axis, cranial articular processes and ventral surface of dens (odontoid) process
227 Axis, spinous process
228 Axis, caudal spine of spinous process
229 Axis, ventral keel?
230 Cervical vertebrae, ventral keel on vertebrae 6 and 7
231 Sacral vertebrae, spinous processes
232 Tail
233 Scapula, teres major process (axillary border) (Taylor, 1974) - A large teres ma
234 Scapula, metacromion-acromion processes - The m. acromiodeltoideus attaches to t
235 Scapula, metacromion process (shape)
236 Scapula, coracoid process
237 Scapula, supraspinus fossa (cranial border)
238 Scapula, overall shape
239 Thoracic vertebrae, number
240 Humerus, supracondylar (= entepicondyloid) foramen
241 Humerus, pectoral crest - Pectoral ridge starts proximally at the anterior edge
242 Humerus, deltoid crest - Deltoid crest starts proximally at the infraspinous fac
243 Humerus, olecranon fossa - Allows for greater arc movement of the antebrachium.
244 Humerus, distal condyle
245 Humerus, radial and coronoid fossas
246 Humerus, greater tuberosity, proximal end
247 Humerus, greater tuberosity, proximal end
248 Humerus, distal supracondyloid crest - Serves for the insertion of the extensor
249 Humerus, cross section
250 Humerus, deltoid and pectoral crest confluence
251 Ulna, olecranon process, medial and lateral ridges
252 Ulna, olecranon process, medial fossa with ventral-medial flange
253 Ulna, distal lateral shelf - Serves for the attachment of the anconeus.
254 Ulna, olecranon process
255 Ulna, olecranon, inclination (Taylor, 1974)
256 Radius, cross section
257 Radius, tubercle
258 Radius, distal expansion
259 Radius, head - articular surface
260 Manus, digit 1 (hallux)
261 Ilium, ventral iliac spine (King, 1966)
262 Pelvis, overall shape
263 Femur, trochanteric fossa
264 Femur, lesser trochanter
265 Femur, lesser trochanter, position - Lesser trochanter aligns with lateral edge
266 Femur, cross section
267 Tibia, cross section
268 Tibia-fibula, proximal fusion
269 Calcaneum, sustentaculum tali (Robinette and Stains, 1970)
270 Calcaneum, calcaneal tubercle or process
271 Calcaneum, medial tuberosity on calcaneal tubercle
272 Calcaneum, peroneal tubercle
273 Calcaneum, medial articular surface
274 Calcaneum, cuboid surface
275 Calcaneum, trochlear process
276 Calcaneum, posterior projection off of cuboid surface
277 Pes, digit 1 (pollex)
278 Baculum
279 Rhinarium, philtrum - Externally visible rhinarial tract that connects the rhina
280 Rhinarium, groove
281 Rhinarium, external nares
282 Rhinarium, dorsal exposure
283 Rhinarium, profile
284 External pinnae, aural posteroexternal bursa
285 External pinnae, posterior, subbursa lobe
286 External pinnae
287 Ear bursa
288 Perineal scent glands, males
289 Perineal glands
290 Perineal glands, male
291 Scrotum, position
292 Mammae
293 Perineal scent glands, females
294 Perineal glands, female
295 Anal glands
296 Feet, interdigital pads (manus and pes)
297 Feet, interdigital webbing of external foot pads
298 Feet, interdigital pads
299 Feet (manus), carpal (palmar) surface, central depression
300 Feet (manus), metacarpal pad(s)
301 Feet (manus), carpal pollical pad
302 Feet (manus), carpal pollical pad, size
303 Feet (manus), metacarpal pad(s), size
304 External pinnae, anterior surface
305 Feet (pes), plantar surface, central depression
306 Feet (pes), metatarsal pad(s)
307 Feet (pes), metatarsal surface (posterior to metatarsal pads)
308 Feet (pes), metatarsal pad(s)
309 Feet (pes), tarsal hallical pad
310 Feet (pes), tarsal hallical pad, size
311 Feet (pes), metatarsal pad(s), size
312 Head, dark face mask
313 Head, interoccular (between) eye patches
314 Head, rhinarial patch
315 Head, suboccular eye patches
316 Head, rostral line
317 Head, supraoccular eye patches
318 Neck, dorsal surface
319 Nuchal stripes
320 Neck, dorsal hair direction
321 Neck, sides
322 Body, spots
323 Body, pale shoulder spots
324 Body, dorsal crest (long dorsal hairs on mid-dorsal line)
325 Body, mid-dorsal stripe
326 Body, mid-dorsal stripe, color
327 Body, ventral surface
328 Feet
329 Legs
330 Tail, tip
331 Tail, hair length
332 Tail, dorsal line
333 External pinnae, posterior surface
334 External pinnae, tuft
335 Tail, fat storage
336 Tail, mobility
337 Cowpers (bulbourethral) gland
338 M. accessorius pedis
339 M. rhomboideus major
340 M. supinator longus (Windle and Parsons, 1897)
341 M. semitendinosus, caudal head (Windle and Parsons, 1897)
342 M. soleus (Windle and Parsons, 1897)
343 Cruciate sulcus (Radinsky, 1971, 1975; Carlsson, 1900)
344 Postlateral sulcus does not overlap lateral sulcus (Radinsky, 1975)
345 Presylvian sulcus (Radinsky, 1975)
346 Suprasylvian sulcus (Radinsky, 1975)
347 Vibrissae, inter-ramal tuft
348 Pupil, horizontally elongated
349 Marker chromosome (Wurster, 1969)