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Citation
Taxa
Matrices
Trees
Analyses
Matrix 15967 of Study 13888
Citation title: "Evolution of host affiliation and substrate preference in a cosmopolitan fungal genus with evidence of interkingdom host jumps and major shifts in ecology".
Study name: "Evolution of host affiliation and substrate preference in a cosmopolitan fungal genus with evidence of interkingdom host jumps and major shifts in ecology".
This study is part of submission 13888
(Status: Published).
Matrices
Title: TEF
Rows
| Taxon Label | Row Segments | Characters 1?–30 |
|---|---|---|
| Hypocrea aeruginea | (none) | ---------------------TTACTTCAT |
| Trichoderma aggressivum | (none) | CGAGAAGGTAAGC-G------CC----AAC |
| Hypocrea alcalifuscescens | (none) | ------------------------------ |
| Hypocrea alni | (none) | ------------------------GATTTT |
| Hypocrea alutacea | (none) | ---------------------------GTT |
| Trichoderma amazonicum | (none) | ------------------------------ |
| Hypocrea americana | (none) | ------------------------------ |
| Hypocrea andinensis | (none) | CGAGAAGGTAAGC-TCA---GTCC---ATT |
| Trichoderma arundinaceum | (none) | ------------------------------ |
| Trichoderma asperelloides | (none) | CGAGAAGGTAAGC-TAA---TTT-CA-CTG |
| Trichoderma asperellum | (none) | ---GAAGGTAAGC-TCA---TTT-CA-CTG |
| Trichoderma atrogelatinosum | (none) | ------AGTAAGC-TTT---ATC----AAC |
| Trichoderma atroviride | (none) | ------AGTAAGC-TCA---TTT----CTG |
| Trichoderma aureoviride | (none) | ---------AAGC-TGA---ATC----AAC |
| Trichoderma austrokoningii | (none) | CGAGAAGGTAAGC-ACA---TTTTCCTGTT |
| Hypocrea avellanea | (none) | CGAGAAGGTAAGCTTCTATCTTAATCTACC |
| Trichoderma brevicompactum | (none) | ------------------------------ |
| Trichoderma brunneoviride | (none) | -----------------------------G |
| Trichoderma candidum | (none) | -GAGAAGGTAAGC-TCA---ATC----CAC |
| Trichoderma caribbaeum | (none) | CGAGAAGGTAAGC-TCA---TTT-CA-CAC |
| Trichoderma catoptron | (none) | -----AGGTAAGC-TCA---ATCA---AAC |
| Trichoderma ceraceum | (none) | ------------------------------ |
| Trichoderma ceramicum | (none) | ------------------------------ |
| Trichoderma cerinum | (none) | --------------------ACT-GATTTT |
| Hypocrea chionea | (none) | CGAGAAGGTAAGC-TCA---ATT-CA-CC- |
| Trichoderma chlorosporum | (none) | -GAGAAGGTAAGC-TCA---ATC----AAC |
| Trichoderma chromospermum | (none) | ------------------------------ |
| Trichoderma cinereoflava | (none) | ------------------------------ |
| Trichoderma cinnamomeum | (none) | CGAGAAGGTAAGC-T------TC----AAC |
| Trichoderma citrinoviride | (none) | ----AAGGTAAGCTTCA---AATC---CTT |
| Trichoderma costaricensis | (none) | CGAGAAGGTAAGC-TCA---ATC----AAC |
| Trichoderma crassum | (none) | ------------------------------ |
| Trichoderma cremeum | (none) | --GGAAGGTAAGC-TCA---ATC----AAC |
| Hypocrea crystalligena | (none) | ------------------------------ |
| Trichoderma cuneisporum | (none) | ----GAGGTAAGC-TCA---ATC----AAC |
| Hypocrea dacrymycella | (none) | ------------------TATCGCATCGCC |
| Hypocrea danica | (none) | -----------------------------T |
| Hypocrea decipiens | (none) | ------------------------------ |
| Hypocrea delicatula | (none) | ---------------------------GTT |
| Trichoderma dingleyae | (none) | ---------TAGC-TCA---TTT-TC-ACT |
| Trichoderma dorotheae | (none) | CGAGAAGGTAAGC-TCA---TTT-CA-CTG |
| Hypocrea epimyces | (none) | ------------------------------ |
| Trichoderma erinaceus | (none) | ---GAAGGTAAGC-TAT---TTT-CA-CAG |
| Trichoderma estonicum | (none) | --GGAAGGTAAGC-TCA---ATC----AAC |
| Hypocrea eucorticioides | (none) | ------------------------------ |
| Trichoderma evansii | (none) | -GAGAAGGTAAGC-TCA---TTT-CA-CTG |
| Trichoderma fertile | (none) | CGAGAAGGTAAGC-TCA---ATT----CAC |
| Hypocrea flaviconidia | (none) | -GAGAAGGTAAGC-TCG---TTT-CA-CTA |
| Hypocrea fomiticola | (none) | ------------------------------ |
| Trichoderma gamsii | (none) | -----AGGTAAGC-TAA---TTT-CA-CTA |
| Trichoderma gelatinosum | (none) | --GGAAGGTAAGC-CCA---ATC----AAC |
| Trichoderma ghanense | (none) | CGAGAAGGTAAGCTTTA---GTCCCTTCAG |
| Trichoderma hamatum01 | (none) | CGAGAAGGTAAGT-TCA---TTT-CG-CTG |
| Trichoderma hamatum02 | (none) | CGAGAAGGTAAGC-TCA---TTT-CG-CTG |
| Trichoderma hamatum03 | (none) | ---GAAGGTAAGC-TCA---TTT-CG-CTG |
| Trichoderma harzianum01 | (none) | ------------C-T------TC----AAC |
| Trichoderma harzianum02 | (none) | ------------------------------ |
| Trichoderma harzianum03 | (none) | -GAGAAGGTAAGC-T------TC----AAC |
| Trichoderma harzianum04 | (none) | CGAGAAGGTAAGC-T------TC----AAC |
| Trichoderma harzianum05 | (none) | CGAGAAGGTAAGC-T------TC----AAC |
| Trichoderma harzianum06 | (none) | CGAGAAGGTAAGC-T------TC----AAC |
| Trichoderma harzianum07 | (none) | ------------------------------ |
| Trichoderma harzianum08 | (none) | -GAGAAGGTAAGC-T------TC----AAC |
| Trichoderma harzianum09 | (none) | CGAGAAGGTAAGC-T------TC----AAC |
| Trichoderma harzianum10 | (none) | CGAGAAGGTAAGC-T------TC----AAC |
| Trichoderma helicum | (none) | ------ACTGATC----------------- |
| Hypomyces | (none) | ------------------------------ |
| Trichoderma intricatum | (none) | CGAGAAGGTAAGC-TCA---TCT-CA-CTG |
| Trichoderma koningii | (none) | CGAGAAGGTAAGC-TCA---TTTCCA-CTG |
| Trichoderma koningiopsis | (none) | CGAGAAGGTAAGC-TCA---TTT-CA-CTG |
| Hypocrea leucopus | (none) | --------------TAAGCTCAGTCCACCT |
| Trichoderma lieckfeldtiae | (none) | -----AGGTAAGC-TAA---TTT-CA-CTA |
| Trichoderma longibrachiatum | (none) | CGAGAAGGTAAGCTTGA---GATCC--CTT |
| Trichoderma longipile | (none) | ---GAAGGTAAGC-TCA---ATC----AAC |
| Hypocrea lutea | (none) | CGAGAAGGTAAGC-GCA---GTCGACTGAT |
| Trichoderma martiale | (none) | -------GTAAGC-TCA---TTT-CA-CTG |
| Hypocrea megalocitrina | (none) | ------------------------------ |
| Trichoderma melanomagnum | (none) | -------------------------TTTTT |
| Hypocrea microcitrina | (none) | ------------------------------ |
| Trichoderma minutisporum | (none) | -------GTAAGC-TCA---GTCGACTGAT |
| Hypocrea moravica | (none) | ------------------------------ |
| Hypocrea neorufa | (none) | CGAGAAGGTAAGC-CCA---TTA-CAACTT |
| Hypocrea nigrovirens | (none) | ----AAGGTAAGC-TCA---ATCA---ACA |
| Trichoderma novaezelandiae | (none) | CGAGAAGGTAAGCTTGC---GATCC--CTT |
| Hypocrea nybergiana | (none) | -------------------TAAACTCGGTC |
| Trichoderma oblongisporum | (none) | -GAGAAGGTAAGCTTTA---TCC----ACT |
| Trichoderma ovalisporum01 | (none) | CGAGAAGGTAAGC-TCA---TTC-CA-CTG |
| Trichoderma ovalisporum02 | (none) | CGAGAAGGTAAGC-TCA---TTC-CA-CTG |
| Trichoderma pachybasioides | (none) | ------AGTAAGC-TCA---GTCGATGATT |
| Trichoderma parapiluliferum | (none) | -----------------------------G |
| Trichoderma parareseei | (none) | CGAGAAGGTAAGTTTCA---TTTCAATTCC |
| Hypocrea parepimyces | (none) | --------------TAAGCGCCAACTGATT |
| Trichoderma parestonicum | (none) | ----------------------ATACTGAT |
| Hypocrea parmastoi | (none) | ------------------------------ |
| Hypocrea patella | (none) | ----GTGGTATCT----------------- |
| Trichoderma paucisporum | (none) | CGAGAAGGTAAGC-TCA---TTT-CA-CTA |
| Trichoderma petersenii | (none) | -------GGAAGC-TCA---TTT-CA-CTG |
| Hypocrea phyllostachydis | (none) | ----GAAGGAAGC-TCA---ATC----AAA |
| Hypocrea pillulifera | (none) | --AGAAGGTAAGC-TCA---TTCACTGACT |
| Hypocrea placentula | (none) | -------------------------ATGAT |
| Trichoderma pleuroticola | (none) | CGAGAAGGTAAGC-T------TC----AAC |
| Trichoderma pleurotum | (none) | CGAGAAGGTAAGC-T------TC----ACC |
| Hypocrea protopulvinata | (none) | ------------------------------ |
| Trichoderma protrudens | (none) | CGAGAAGGTAAGC-GCA---GCCTGATTTT |
| Trichoderma pseudokoningii | (none) | ------GGTAAGC-TCA---ATCC---CTT |
| Hypocrea pseudostraminea | (none) | ------------------------------ |
| Hypocrea psychrophila | (none) | --------------------TCCAACCCTT |
| Trichoderma pubescens | (none) | --GGAAGGTAAGC-TCA---TTT-CA-CTG |
| Hypocrea pulvinata | (none) | ------GGTCAGT----------------- |
| Trichoderma reesei | (none) | ------------------------------ |
| Hypocrea rodmanii | (none) | ------GGTAAGC-TCA---GTCGCCTCAG |
| Trichoderma rogersonii | (none) | -----AGGTAAGC-ACA---TTTTCTACT- |
| Trichoderma rossicum | (none) | TGAGAAGGTAAGC-TCA---GTC----GCC |
| Trichoderma saturnisporum | (none) | ------------------------------ |
| Hypocrea semiorbis | (none) | ------------------------------ |
| Hypocrea seppoi | (none) | ----------------------------CC |
| Trichoderma sinuosum | (none) | ------------------------------ |
| Sphaerostilbella | (none) | -GGTAAGCCAATCCTCA------------- |
| Hypocrea spinulosa | (none) | -------------------TAAGCTTTTTT |
| Trichoderma spirale01 | (none) | CGAGAAGGTAAGC-TCA---ATC----AAC |
| Trichoderma spirale02 | (none) | ----GAGGTAAGC-TCA---ATC----AAC |
| Trichoderma spirale03 | (none) | -GAGAAGGTAAGC-TCA---ATC----AAC |
| Trichoderma stilbohypoxyli | (none) | CGAGAAGGTAAGC-TCA---TTT-CA-CTG |
| Hypocrea straminella | (none) | -GAGAAGGTAAGC-TTG---ATC----AAC |
| Trichoderma strictipile | (none) | ----------------------T----CAC |
| Trichoderma strigosum | (none) | -----AGGTAAGC-TCA---TTT-CA-TTG |
| Trichoderma stromaticum | (none) | CGAGAAGG?AAGC-TCA---GTC----GCC |
| Hypocrea subalpina | (none) | -------------------TAAGATCTCCG |
| Hypocrea sulawesensis | (none) | CGAGAAGGTAAGC-TCA---TGA----ATT |
| Hypocrea sulfurea | (none) | --------TTAGTCTAT---TCTACTTTTT |
| Trichoderma surrotundum | (none) | ------AGTAAGC-TCA---GTC----AAC |
| Hypocrea tawa | (none) | ----AAGGTAAGC-T------TC----AAC |
| Trichoderma thailandicum | (none) | --GGAAGGTAAGC-TCA---ATC----AAA |
| Trichoderma thelephoricola | (none) | CGAGAAGGTAAGC-TCA---TTC----ATC |
| Trichoderma theobromicola | (none) | CGAGAAGGTAAGC-TCATTCTTT-CA-CTG |
| Trichoderma tomentosum | (none) | -GAGAAGGTAAGC-TTT---ATC----AAC |
| Trichoderma turrialbense | (none) | ------------------------------ |
| Trichoderma velutinum | (none) | ------------------------------ |
| Trichoderma victoriensis | (none) | T?AGAAGGTTAGTCTAT---TCTAC-TTTT |
| Trichoderma virens | (none) | -GAGAAGGTGAGC-TCA---ATC-----AA |
| Trichoderma virescentiflava | (none) | --GGAAGGTAAGC-TCA---ATC----AAC |
| Trichoderma viride | (none) | CGAGAAGGTAAGC-TCA---TTT-CA-CTG |
| Trichoderma viridescens | (none) | CGAGAAGGTAAGC-TCA---TTT-CA-CTG |
| Hypocrea voglmayrii | (none) | ------------------------------ |
Columns
None of the columns has a description.
