@ARTICLE{TreeBASE2Ref22598,
author = {Stefan Ekman and Mats Wedin and Louise Lindblom and Per Magnus Jorgensen},
title = {Extended phylogeny and a revised generic classification of the Pannariaceae (Peltigerales, Ascomycota)},
year = {2014},
keywords = {Collemataceae, lichen taxonomy, model adequacy, model selection},
doi = {10.1017/S002428291400019X},
url = {},
pmid = {},
journal = {The Lichenologist},
volume = {46},
number = {5},
pages = {627--656},
abstract = {We estimated phylogeny in the lichen-forming ascomycete family Pannariaceae. We specifically
modelled spatial (across-site) heterogeneity in nucleotide frequencies, as models not incorporating
this heterogeneity were found to be inadequate for our data. Model adequacy was measured
here as the ability of the model to reconstruct nucleotide diversity per site in the original sequence
data. A potential non-orthologue in the internal transcribed spacer region (ITS) of Degelia plumbea
was observed. We propose a revised generic classification for the Pannariaceae, accepting 30 genera,
based on our phylogeny, previously published phylogenies, as well as available morphological and
chemical data. Four genera are established as new: Austroparmeliella (for the ?Parmeliella? lacerata
group), Nebularia (for the ?Parmeliella? incrassata group), Nevesia (for ?Fuscopannaria? sampaiana),
and Pectenia (for the ?Degelia? plumbea group). Two genera are reduced to synonymy, Moelleropsis
(included in Fuscopannaria) and Santessoniella (non-monophyletic; type included in Psoroma). Lepidocollema,
described as monotypic, is expanded to include 23 species, most of which have been treated in
the ?Parmeliella? mariana group. Homothecium and Leightoniella, previously treated in the Collemataceae,
are here referred to the Pannariaceae. We propose 41 new species-level combinations in the newly
described and re-circumscribed genera mentioned above, as well as in Leciophysma and Psoroma.}
}
Matrix 16620 of Study 14978
Citation title:
"Extended phylogeny and a revised generic classification of the Pannariaceae (Peltigerales, Ascomycota)".
Study name:
"Extended phylogeny and a revised generic classification of the Pannariaceae (Peltigerales, Ascomycota)".
This study is part of submission 14978
(Status: Published).
Matrices
Title: GRK
Description: G protein receptor kinase
Rows
|
Taxon Label |
Row Segments |
Characters 1?–30 |
| Phytophthora infestans GRK |
(none)
|
--MDELHDAIQDAQYI-------GAVTNTQ |
| Albugo laibachii GRK |
(none)
|
--MDDLHDALQDAQYI-------GAVTNAL |
| Drosophila melanogaster GRKb |
(none)
|
--MADLEAVLADVSYLMAME--KSKCTPAA |
| Enteroctopus dofleini GRKb |
(none)
|
--MADLEAVLADVSYLMAME--KSKSSPAA |
| Doryteuthis pealeii GRKb |
(none)
|
--MADLEAVLADVSYLMAME--KSKSSPAA |
| Terebratalia transversa GRKb |
(none)
|
--MADLEAVLADVSYLMAME--KSKSTPAA |
| Mus musculus GRK2 |
(none)
|
--MADLEAVLADVSYLMAME--KSKATPAA |
| Mus musculus GRK3 |
(none)
|
--MADLEAVLADVSYLMAME--KSKTAPAA |
| Branchiostoma floridae GRKb |
(none)
|
--MADLEAVLADVSYLMAME--KSKSTPAA |
| Nematostella vectensis GRKb |
(none)
|
--MADLEAVLADVSYLMAME--KSKSTPAA |
| Mus musculus GRK1 |
(none)
|
MDFGSLETVVANSAFIAARGSFDGSSTPSS |
| Drosophila melanogaster GRKa |
(none)
|
---MELENIVANTVYLKARE--GGSDSNKG |
| Mus musculus GRK4 O70291 |
(none)
|
---MELENFVANNLLLKARL---GFNKQTG |
| Nematostella vectensis GRKa |
(none)
|
---MELENIVANTVFIKARE-----SKNKG |
| Mus musculus GRK5 |
(none)
|
-----------------------GGGKRKG |
| Mus musculus GRK6A |
(none)
|
---MELENIVANTVLLKARE--GGGGNRKG |
| Mus musculus GRK6B |
(none)
|
---MELENIVANTVLLKARE--GGGGNRKG |
| Branchiostoma floridae GRKa |
(none)
|
------------------------------ |
| Terebratalia transversa GRKa |
(none)
|
---MELENIVANTVYLKARE--GGGGKRKG |
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