@ARTICLE{TreeBASE2Ref17952,
author = {Heroen Verbruggen and O. D. Clerck and Tom Schils and W. H. C. F. Kooistra and Eric Coppejans},
title = {Evolution and phylogeography of Halimeda section Halimeda},
year = {2005},
keywords = {},
doi = {},
url = {},
pmid = {},
journal = {Molecular Phylogenetics and Evolution},
volume = {37},
number = {},
pages = {789--803},
abstract = {Nuclear ribosomal and plastid DNA sequences of specimens belonging to section Halimeda of the pantropical green seaweed genus Halimeda show that the group under scrutiny contains many more genetically delineable species than those recognized by classical taxonomy. Discordances between phylograms inferred from nuclear and plastid DNA sequences suggest that reticulate evolution has been involved in speciation within the clade. Nonetheless, our data do not allow ruling out certain alternative explanations for the discordances. Several pseudo-cryptic species are restricted to the margins of the generic distribution range. In a clade of H. cuneata sibling species from widely separated subtropical localities in the Indian Ocean, the South African sibling branches off first, leaving the Arabian and West Australian species as closest relatives. We hypothesize that geographic isolation of the siblings may have taken place following Pleistocene or Pliocene periods of climatic cooling during which subtropical species occupied larger distribution ranges. A more basal separation of Atlantic, Indo-Pacific, and Mediterranean species indicates vicariance. The alternative events that could have caused this vicariance are discussed.}
}
Matrix 1038 of Study 1472

Citation title:
"Evolution and phylogeography of Halimeda section Halimeda".

This study was previously identified under the legacy study ID S1416
(Status: Published).
Matrices
Title: SSU-ITS
Description: Legacy TreeBASE Matrix ID = M2551
Rows
Taxon Label |
Row Segments |
Characters 1?–30 |
Halimeda cuneata 1 KZN2K4 21 AY823840 |
(none)
|
GCTCGTAGTTGGACTTCTGGCGACCGCGTT |
Halimeda cuneata 2 KZNb2352 AY823841 |
(none)
|
GCTCGTAGTTGGACTTCTGGCGACCGCGTT |
Halimeda cuneata 3 WA182 AY823838 |
(none)
|
GCTCGTAGTTGGACTTCTGGCGACNGCGTT |
Halimeda cuneata 4 SOC252 AF525595 |
(none)
|
GCTCGTAGTTGGACTTCTGGCGACCGCGCT |
Halimeda cuneata 7 H0500 AF823837 |
(none)
|
GCTCGTAGTTGGACTTCTGGCGACCGCGCT |
Halimeda cuneata undulata |
(none)
|
GCTCGTAGTTGGACTTCTGGCGACCGCGCT |
Halimeda discoidea 1 OMII118 AF823839 |
(none)
|
GCTCGTAGTTGGACTTCTGGCGACCGCGCT |
Halimeda discoidea 1 SOC299 AF407254 |
(none)
|
GCTCGTAGTTGGACTTCTGGCGACCGCGCT |
Halimeda discoidea 2 H0207 AF407249 |
(none)
|
GCTCGTAGTTGGACTTCTGGCGACCGCGCT |
Halimeda discoidea 3 HV396 |
(none)
|
GCTCGTAGTTGGACTTCTGGCGACCGCGCT |
Halimeda gracilis |
(none)
|
GCTCGTAGTTGGACTTCTGGCGACCGCGTT |
Halimeda hummii |
(none)
|
GCTCGTAGTTGGACTTCTGGCGACCGCGCT |
Halimeda lacunalis |
(none)
|
GCTCGTAGTTGGACTTCTGGCGACCGCGCT |
Halimeda macrophysa |
(none)
|
GCTCGTAGTTGGACTTCTGGCGACCGCGCT |
Halimeda magnidisca |
(none)
|
GCTCGTAGTTGGACTTCTGGCGACCGCGCT |
Halimeda taenicola |
(none)
|
GCTCGTAGTTGGACTCCTGGCGACCGCGCT |
Halimeda tuna 1 H0231 AF407248 |
(none)
|
GCTCGTAGTTGGACTTCTGGCGACCGCGCT |
Halimeda tuna 2 H0113 AF407250 |
(none)
|
GCTCGTAGNTGGACTTCTGGCGACTGCGCT |
Columns
None of the columns has a description.