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Matrix 44890 of Study 14730
Citation title: "Phylogenetic relationships within the snapping shrimp genus Synalpheus (Decapoda: Alpheidae)".
Study name: "Phylogenetic relationships within the snapping shrimp genus Synalpheus (Decapoda: Alpheidae)".
This study is part of submission 14730
(Status: Published).
Matrices
Title: Synalpheus
Rows
| Taxon Label | Row Segments | Characters 1?–30 |
|---|---|---|
| Alpheus percyi | (none) | ------------------------------ |
| Synalpheus aff antillensis 520 | (none) | ------------------------------ |
| Synalpheus aff antillensis 521 | (none) | ------------------------------ |
| Synalpheus aff antillensis 522 | (none) | AACTTTATATTTTATCTTTGGAGCCTGAGC |
| Synalpheus aff apioceros A_586 | (none) | -CCTTTATATTTCATTTTCGGGGCTTGAGC |
| Synalpheus aff apioceros A_587 | (none) | ------------------------------ |
| Synalpheus aff apioceros A_590 | (none) | AACCTTATATTTCATTTTCGGGGCTTGAGC |
| Synalpheus aff apioceros B_588 | (none) | ------------------------------ |
| Synalpheus aff apioceros B_589 | (none) | ------------------------------ |
| Synalpheus aff brevifrons 612 | (none) | ------------------------------ |
| Synalpheus aff brevifrons 613 | (none) | AACTTTATACTTTATATTCGGAACATGAGC |
| Synalpheus aff longicarpus 1 | (none) | AACTTTATATTTTATTTTTGGAGCTTGAGC |
| Synalpheus aff longicarpus 463_840 | (none) | --CTTTATATTTTATTTTTGGAGCTTGAGC |
| Synalpheus aff longicarpus 488 | (none) | ----------TTTATTTTTGGAGCTTGAGC |
| Synalpheus aff paraneptunus 477 | (none) | ------------------------------ |
| Synalpheus aff sanctithomae 471 | (none) | ------------------------------ |
| Synalpheus aff sanctithomae 486 | (none) | ---TTTATACTTCATTTTTGGTGCTTGAGC |
| Synalpheus africanus 592 | (none) | ------------------------------ |
| Synalpheus agelas 459 | (none) | ------------------------------ |
| Synalpheus androsi 467 | (none) | AACCCTATATTTTATTTTTGGAGCTTGAGC |
| Synalpheus antillensis 523 | (none) | --CTTTATACTTTATCTTTGGAGCCTGGGC |
| Synalpheus antillensis 524 | (none) | ---TTTATACTTTATCTTTGGAGCCTGGGC |
| Synalpheus apioceros 593 | (none) | AACTTTATACTTCATTTTTGGAGCTTGAGC |
| Synalpheus bannerorum 563_634 | (none) | ------------------------------ |
| Synalpheus belizensis 32 | (none) | AACCTTATACTTTATTTTTGGAGCATGAGC |
| Synalpheus belizensis 50 | (none) | --------ACTTTATTTTTGGAGCATGGGC |
| Synalpheus bocas 16 | (none) | AACCTTATACTTTATTTTTGGAGCATGAGC |
| Synalpheus bocas 17 | (none) | AACCTTATACTTTATTTTTGGAGCATGAGC |
| Synalpheus bousfieldi 483_460 | (none) | ---TTTATATTTTATCTTCGGATCTTGGGC |
| Synalpheus brevicarpus A_526 | (none) | AACCCTATACTTTATCTTTGGAGCATGAGC |
| Synalpheus brevicarpus A_529 | (none) | -ACCCTATACTTTATCTTTGGAGCATGAGC |
| Synalpheus brevicarpus A_530 | (none) | ------------------------------ |
| Synalpheus brevicarpus B_531 | (none) | -------TACTTTATCTTCGGAGCCTGAGC |
| Synalpheus brevicarpus B_532 | (none) | AACCCTATACTTTATCTTCGGAGCCTGAGC |
| Synalpheus brevifrons 481 | (none) | ---------------------------AGC |
| Synalpheus brooksi 476 | (none) | ---------------------------GGC |
| Synalpheus brooksi 479 | (none) | ---------TTTTATCTTCGGATCTTGGGC |
| Synalpheus brooksi 578 | (none) | ------------------------------ |
| Synalpheus carpenteri 421_458 | (none) | AACATTATATTTTATCTTTGGAGCTTGAGC |
| Synalpheus cf africanus_A_664 | (none) | ------------------------------ |
| Synalpheus cf africanus_B_595 | (none) | ------------------------------ |
| Synalpheus cf biunguiculatus_556 | (none) | ------------------------------ |
| Synalpheus cf biunguiculatus_557 | (none) | AACATTATATTTTATTTTTGGAGCCTGGGC |
| Synalpheus cf quadrispinosus_622 | (none) | ------------------------------ |
| Synalpheus cf tumidomanus_A_701 | (none) | ---TTATTATTTTATTTTTGGAGCTTGAGC |
| Synalpheus cf tumidomanus_B_674 | (none) | ------------------------------ |
| Synalpheus chacei 457 | (none) | ------------------------------ |
| Synalpheus charon A_565 | (none) | AACTTTATATTTTATTTTCGGAGCCTGAGC |
| Synalpheus charon A_635 | (none) | AACTTTATATTTTATTTTCGGAGCCTGAGC |
| Synalpheus charon B_636 | (none) | --------------------GAGCCTGAGC |
| Synalpheus charon C_566 | (none) | AACTTTATATTTTATTTTTGGAGCTTGAGC |
| Synalpheus coutierei A_631 | (none) | ------------------------------ |
| Synalpheus coutierei B_559 | (none) | ------------------------------ |
| Synalpheus dardeaui 461 | (none) | ------------------------------ |
| Synalpheus dardeaui 801 | (none) | ------------------------------ |
| Synalpheus digueti A_513 | (none) | ------------------------------ |
| Synalpheus digueti A_522 | (none) | ------------------------------ |
| Synalpheus digueti A_534 | (none) | ----------------TTCGGGGCGTGGGC |
| Synalpheus digueti BC_535 | (none) | ------------------------------ |
| Synalpheus digueti D_516 | (none) | ------------------------------ |
| Synalpheus dominicensis 482 | (none) | ------ATATTTTATTTTTGGAGCCTGAGC |
| Synalpheus dominicensis 569 | (none) | ------------------------------ |
| Synalpheus duffyi 26 | (none) | AACTTTATATTTTATTTTCGGCGCCTGAGC |
| Synalpheus filidigitus 470 | (none) | AACTCTATACTTTATTTTTGGAGCCTGAGC |
| Synalpheus fossor 570 | (none) | ------------------------------ |
| Synalpheus fritzmuelleri 642_734 | (none) | ------------------------------ |
| Synalpheus goodei 464_841 | (none) | AACTTTATACTTCATTTTTGGAGCTTGAGC |
| Synalpheus gracilirostris 666 | (none) | ----------TTTGTTTTCGGAGCTTGAGC |
| Synalpheus guerini A_527 | (none) | AACCCTATATTTTATCTTTGGAGCATGAGC |
| Synalpheus guerini A_541_542 | (none) | --------------------GAGCATGAGC |
| Synalpheus guerini A_545 | (none) | ---------TTTTATCTTTGGAGCATGGGC |
| Synalpheus guerini A_615 | (none) | ------------------------------ |
| Synalpheus guerini B_518 | (none) | AACCCTATATTTTATCTTTGGAGCATGGGC |
| Synalpheus guerini B_546 | (none) | ------------------------------ |
| Synalpheus hastilicrassus A_667 | (none) | ACTTTATATTTTATCTTTGGGAGCCTGAGC |
| Synalpheus hastilicrassus A_678 | (none) | -ACTTTATATTTTATCTTTGGGAGCTGAGC |
| Synalpheus hastilicrassus B_596 | (none) | ------------------------------ |
| Synalpheus hastilicrassus B_665 | (none) | ------------------------------ |
| Synalpheus hastilicrassus B_669 | (none) | ACATTATTACTTTATCTTTGGAGCTTGAGC |
| Synalpheus hastilicrassus C_581 | (none) | ------------------------------ |
| Synalpheus hastilicrassus C_597_653 | (none) | ------------------------------ |
| Synalpheus hemphilli 571 | (none) | -ACTTTATATTTTATTTTTGGAGCTTGAGC |
| Synalpheus hemphilli 572 | (none) | AACTTTATATTTTATTTTTGGAGCTTGAGC |
| Synalpheus hemphilli 639 | (none) | ---------TTTTATTTTTGGAGCTTGAGC |
| Synalpheus heroni 645 | (none) | ------------------------------ |
| Synalpheus herricki 157 | (none) | AACTCTATACTTTATTTTTGGAGCTTGAGC |
| Synalpheus hoetjesi 202 | (none) | ------------------------------ |
| Synalpheus hoetjesi 205 | (none) | AACTTTATACTTTATTTTTGGAGCTTGAGC |
| Synalpheus hoetjesi 248 | (none) | AACTTTATACTTTATTTTTGGAGCTTGAGC |
| Synalpheus idios 474 | (none) | ------------------------------ |
| Synalpheus irie 493 | (none) | AACACTATATTTTATTTTTGGAGCTTGAGC |
| Synalpheus kensleyi 504 | (none) | -----------------------------C |
| Synalpheus lani 599 | (none) | ------------------------------ |
| Synalpheus longicarpus 710_741 | (none) | ------------------------------ |
| Synalpheus mcclendoni 111 | (none) | AACTTTATACTTTATTTTCGGAGCATGAGC |
| Synalpheus microneptunus 247 | (none) | AACTTTATATTTTATTTTCGGCGCCTGAGC |
| Synalpheus minus 517 | (none) | ------------------------------ |
| Synalpheus minus 519 | (none) | ------------------------------ |
| Synalpheus minus 525 | (none) | AACCTTATATTTTATTTTCGGAGCATGAGC |
| Synalpheus minus 544 | (none) | ------------------------------ |
| Synalpheus minus 548 | (none) | ------------------------------ |
| Synalpheus minus 621 | (none) | ------------------------------ |
| Synalpheus neptunus A_560 | (none) | ------------------------------ |
| Synalpheus neptunus B_561 | (none) | ------------------------------ |
| Synalpheus nilandensis 647 | (none) | ------------------------------ |
| Synalpheus nobilii 576 | (none) | ------------------------------ |
| Synalpheus nobilii 648 | (none) | ACTTTTATATTTTATTTTCGGAGCTTGAGC |
| Synalpheus obtusifrons 465 | (none) | ------------------------------ |
| Synalpheus occidentalis 607 | (none) | AACTTTATATTTTATTTTTGGAGCCTGAGC |
| Synalpheus occidentalis 608 | (none) | AACTTTATATTTTATTTTTGGAGCCTGAGC |
| Synalpheus pandionis 472 | (none) | ----------------TTTGGAGCCTGAGC |
| Synalpheus paraneomeris A_580 | (none) | ------------------------------ |
| Synalpheus paraneomeris B_579 | (none) | ------------------------------ |
| Synalpheus parfaiti 609 | (none) | --------------TTTTTGGCGCTTGAGC |
| Synalpheus parfaiti 705 | (none) | ------------------------------ |
| Synalpheus pectiniger 500 | (none) | AACCCTATATTTTATTTTTGGAGCCTGAGC |
| Synalpheus peruvianus 601 | (none) | ------------------------------ |
| Synalpheus peruvianus 675 | (none) | ----------TTCATTTTTGGAGCCTGAGC |
| Synalpheus peruvianus 676 | (none) | AACATTATACTTCATTTTTGGAGCCTGAGC |
| Synalpheus regalis 469 | (none) | ------------------------------ |
| Synalpheus ruetzleri 466 | (none) | AACTTTATATTTCATTTTTGGAGCTTGAGC |
| Synalpheus sanjosei 680 | (none) | ----------------------------GC |
| Synalpheus sanjosei 681 | (none) | ---------------------------AGC |
| Synalpheus sanjosei 682 | (none) | AACTTTATACTTTATTTTTGGAGCTTGAGC |
| Synalpheus sanlucasi 654 | (none) | ------------------------------ |
| Synalpheus scaphoceris 683 | (none) | TACCCTATACTTTATTTTTGGAGCCTGAGC |
| Synalpheus scaphoceris 684 | (none) | ------------------------------ |
| Synalpheus senegambiensis 686 | (none) | ------------------------------ |
| Synalpheus spinifrons 611 | (none) | ------------------------------ |
| Synalpheus spinifrons 706 | (none) | AACTTTATATTTTATCTTTGGAGCCTGAGC |
| Synalpheus stimpsonii A_553 | (none) | ------------------------------ |
| Synalpheus stimpsonii A_625 | (none) | ---------------TTTTGGAGCATGATC |
| Synalpheus stimpsonii B_554 | (none) | ------------------------------ |
| Synalpheus stimpsonii C_550_551 | (none) | ------------------------------ |
| Synalpheus streptodactylus A_583 | (none) | ------------------------------ |
| Synalpheus streptodactylus A_646 | (none) | ------------------------------ |
| Synalpheus streptodactylus B_575 | (none) | ------------------------------ |
| Synalpheus streptodactylus B_655 | (none) | ------------------------------ |
| Synalpheus streptodactylus C_573 | (none) | TACTTTATATTTTATCTTTGGAGCCTGAGC |
| Synalpheus streptodactylus D_574 | (none) | ------------------------------ |
| Synalpheus streptodactylus D_584 | (none) | ------------------------------ |
| Synalpheus stylopleuron A_688 | (none) | ------------------------------ |
| Synalpheus stylopleuron A_689 | (none) | AACTTTATACTTTATTTTTGGTGCCTGAGC |
| Synalpheus stylopleuron B_687 | (none) | -ACCTTATACTTCATTTTTGGAGCCTGAGC |
| Synalpheus superus 614 | (none) | ------------------------------ |
| Synalpheus superus 692_694 | (none) | AACTTTATATTTCATTTTTGGAGCCTGAGC |
| Synalpheus thele 113_35 | (none) | AACATTATACTTCATTTTCGGAGCCTGAGC |
| Synalpheus thele 257 | (none) | AACATTATACTTCATTTTCGGAGCCTGAGC |
| Synalpheus tijou 555 | (none) | ------------------------------ |
| Synalpheus triunguiculatus 585 | (none) | ------------------------------ |
| Synalpheus ul 253 | (none) | --------ATTTCATTTTTGGAGCTTGAGC |
| Synalpheus williamsi 462 | (none) | ------------------------------ |
| Synalpheus yano 475 | (none) | ------------------------------ |
| Synalpheus yano 484 | (none) | AACCTTATATTTCATTTTTGGAGCTTGAGC |
| Synalpheus yano 5 | (none) | AACCTTATATTTCATTTTTGGAGCTTGAGC |
| Synalpheus yano 802 | (none) | ---------TTTCATTTTTGGAGCTTGAGC |
Columns
None of the columns has a description.
