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Matrix 21785 of Study 15669
Citation title: "Gene transfers shaped the evolution of de novo NAD+ biosynthesis in eukaryotes".
Study name: "Gene transfers shaped the evolution of de novo NAD+ biosynthesis in eukaryotes".
This study is part of submission 15669
(Status: Published).
Matrices
Title: Nicotinate-Nucleotide Pyrophosphorylase Alignment
Rows
| Taxon Label | Row Segments | Characters 1?–30 |
|---|---|---|
| Canis lupus 73958447 | (none) | ---M-----LLPP-LA--AD----SW-LRE |
| Monodelphis domestica 126334616 | (none) | ---L-----RLPP-LE--AD----SW-LRE |
| Homo sapiens 119600420 | (none) | QPQM-----LLPP-LA--VD----SW-LRE |
| Anolis carolinensis 327286062 | (none) | ----RGF--HLPAALR--AK----DW-LQE |
| Chrysemys picta 530651528 | (none) | -----R-L-HLPPPLR--VR----DW-LQE |
| Xenopus tropicalis 301622624 | (none) | -----D----LPPRLQ--AR----DW-LAE |
| Mus musculus 19526852 | (none) | ---M-----LLPP-LA--AN----SW-LQE |
| Takifugu rubripes 410932074 | (none) | ---------HIPPHLT--AR----EW-LEE |
| Oreochromis niloticus 542187933 | (none) | -----H---VVPHHLT--AR----AW-LAE |
| Latimeria chalumnae 557006856 | (none) | -------L-HLHPVLK--AQ----DW-LLE |
| Ciona intestinalis 198427547 | (none) | KASE---SAYLPQ-VA--IK----SW-LEE |
| Amphimedon queenslandica 340380825 | (none) | ---E---ST-LSPAI---VR----GW-IKE |
| Nematostella vectensis 156373006 | (none) | -----N-F-LIPKVIE--VE----TW-LKE |
| Crassostrea gigas 405970213 | (none) | --------------MA--------EW-LKE |
| Lottia gigantea 556108132 | (none) | -----ANL-CLSPILR--AR----EW-LKE |
| Helobdella robusta 555695892 | (none) | ----M--LKHLHPTLR--VN----YW-LEE |
| Aplysia californica 524891882 | (none) | ----S-VL-LLTPTLK--VR----EW-FKE |
| Capitella teleta 443726530 | (none) | MQVETT-L-MLHPIVQ--VR----EW-LKE |
| Branchiostoma floridae 260820596 | (none) | ----S--LVHIHPVVK--VR----RW-LEE |
| Saccoglossus kowalevskii 291224699 | (none) | ----MG-PQHIHPTLK--VR----QW-LNE |
| Trichoplax adhaerens 196001563 | (none) | -----N----VSKVVE--VN----QW-IQE |
| Salpingoeca rosetta 326430421 | (none) | -----A-YDG-PE--R--VR----AW-LAE |
| Aspergillus fumigatus 71000697 | (none) | ---S-V-LRHLPNNYK--IT----AW-LEE |
| Aspergillus nidulans 259485580 | (none) | ---S-A-LRHLPATYK--IS----DW-LEE |
| Pyrenophora teres 311319941 | (none) | SR-P-A-VAHLPETYK--VS----EW-LEE |
| Botryotinia fuckeliana 154302740 | (none) | ---M-A-LEHLPVHWK--IT----AW-FAE |
| Fusarium graminearum 46136067 | (none) | ---P-K--ENLPPSWK--VT----AW-LAE |
| Colletotrichum graminicola 310797743 | (none) | ---P-L--EHLPPSWK--VT----AW-LAE |
| Cryptococcus neoformans 58264948 | (none) | ET-P-G-QNHLPPSWS--VQ----RW-FAE |
| Schizophyllum commune 302696823 | (none) | -------YEHLPPSWK--VT----AW-LAE |
| Trametes versicolor 392568318 | (none) | ---S-E-FEHLPPSWK--VT----AW-LQE |
| Laccaria bicolor 170090746 | (none) | ---K-S-FEHLPPSWK--VT----AW-LTE |
| Mixia osmundae 358057313 | (none) | ---P-A-LAHLPPSWR--IT----SW-LAE |
| Ustilago maydis 71020357 | (none) | -M-P-V--ANLPPSWK--VS----EW-LAE |
| Ashbya gossypii 302308777 | (none) | ---P-E-FKNLPANWK--IT----NW-LQE |
| Zygosaccharomyces rouxii 254583213 | (none) | ---A-H-YENLPSNWK--IT----NW-LQE |
| Saccharomyces cerevisiae 19705600 | (none) | ---P-V-YEHLPVNWR--VT----NW-LSE |
| Neurospora crassa 16945374 | (none) | ---M-I-LEHLPVSWK--IT----AW-LAE |
| Yarrowia lipolytica 50552482 | (none) | ---M-S-FAHLPIDWK--VT----RW-MSE |
| Komagataella pastoris 254572087 | (none) | MS-P-E-FAHLPVDWK--IT----SW-LDE |
| Meyerozyma guilliermondii 190346853 | (none) | ---M-S-YSNLPANWK--IT----EY-IRE |
| Debaryomyces hansenii 294659145 | (none) | ---S-S-YANLPANWK--IT----DY-LQE |
| Scheffersomyces stipitis 126138416 | (none) | ---S-A-YANLPVNWK--IT----DY-LTE |
| Mortierella verticillata MVEG 07206.1 | (none) | ---A----NHLPLNWK--IT----EW-LQE |
| Batrachochytrium dendrobatidis 328768375 | (none) | ---P----SHLPTNWK--VS----SW-LDE |
| Allomyces macrogynus AMAG 16286.2 | (none) | ---S----AHLPPSWK--VA----AW-LAE |
| Mucor circinelloides 511011227 | (none) | ---A----AHLATNYK--IA----DY-LAE |
| Rhizopus delemar 384494577 | (none) | ---A----SDLATNYK--VS----QY-LAE |
| Rhizophagus irregularis 552921220 | (none) | ---S----AHLSPSYK--IS----NW-LKE |
| Spizellomyces punctatus SPPG 08064.3 | (none) | ---P---LSHLPTNWK--VS----SW-LDE |
| Dictyostelium discoideum 74876284 | (none) | ---E-I-SQ-L---FK--IK----EW-LEE |
| Dictyostelium fasciculatum 470247366 | (none) | NN-S-S-LSYI-KSIQ--VR----AW-LKE |
| Dictyostelium purpureum 330845892 | (none) | ---E-L-SL-I-NNIE--IK----EW-LEE |
| Polysphondylium pallidum 281204821 | (none) | MV-D-V-YSHF-KSLQ--IK----DW-LDE |
| Ectocarpus siliculosus 298708640 | (none) | ---P-D-YED-PRNWE--VQ----TW-LDE |
| Albugo laibachii 325192082 | (none) | --AP-C-MAH-PPTWK--VQ----MW-LED |
| Nannochloropsis gaditana 422293510 | (none) | ---Q-G-IAQ-PPVRA--------GW-LEE |
| Phytophthora infestans 301091078 | (none) | --MP-R-FAH-PPSWT--VQ----LW-LED |
| Phytophtora ramorum JGI 2507657097 | (none) | --MT-N-FAH-PPSWT--VQ----LW-LED |
| Aureococcus anophagefferens 323450966 | (none) | ---M---FAC-PPYER--AD-----W-LRD |
| Phaeodactylum tricornutum 219129720 | (none) | ---E-S-YST-PKIIE--VK----QW-IAD |
| Thalassiosira pseudonana 224008214 | (none) | -------LSS-PP--P--VF----QW-LQD |
| Schizochytrium aggregatum Schag1 96276 | (none) | ---P---MK-LPLSWR--DD----NW-MAA |
| Aurantiochytrium limacinum Aurli1 47555 | (none) | ---P---FA-LPPH-R--VR----GW-LVA |
| Aplanochytrium kerguelense Aplke1 71850 | (none) | ---E---SE--PPIVR--IK----GW-LKT |
| Galdieria sulphuraria 545706519 | (none) | ---T-Q-HSHIPQHI---VL----SW-LEE |
| Cyanidioschyzon merolae 544214606 | (none) | ---E-------PPLLN--IE----RW-LLE |
| Porphyridium purpureum contig 548.3 | (none) | ---A-V-VESLDTQLR--VR----EW-LRE |
| Chondrus crispus 546298846 | (none) | QLSE-G-ILVLPP-LR--AS----SW-LLE |
| Halarchaeum acidiphilum 545903776 | (none) | --------------MT--AE----RW-LRE |
| Haloquadratum sp 544619543 | (none) | -----------M-SRN--LP----AW-LKE |
| Natronomonas moolapensis 452207189 | (none) | ----------IP------IE----AW-LRE |
| Halosarcina pallida 495660202 | (none) | ----------LT------VE----RW-LRE |
| Halorubrum coriense 493053117 | (none) | --------------TD--VE----RW-LRE |
| Halorubrum sp 544625340 | (none) | ----------IT------IE----RL-LKE |
| halophilic archaeon 544604960 | (none) | ----------LT------VE----TW-LRE |
| Halococcus morrhuae 490156868 | (none) | ----------M----R--IE----RW-LRE |
| Bacillus pumilus 489308961 | (none) | --------M------------------FTE |
| Bacillus pumilus 515937137 | (none) | --------M------------------LKE |
| Bacillus licheniformis 52081266 | (none) | --------M-----------R------FKE |
| Bacillus sp 493892095 | (none) | ---------------------------L-E |
| Microcystis aeruginosa 488885608 | (none) | --------M-----------P------LRE |
| Geminocystis herdmanii 515863331 | (none) | --------M-------IT--S------LLE |
| Geitlerinema sp 516256703 | (none) | ------RAW-----------S------LKE |
| Nodosilinea nodulosa 515868781 | (none) | --------M-------SI--G------LHE |
| Gloeocapsa sp 434395003 | (none) | --------M-----------N------LIE |
| Cyanothece sp 495549546 | (none) | --------M-----------S------LQE |
| Synechococcus sp 427714595 | (none) | --------L-------PH--I------LQE |
| Synechococcus sp 170076994 | (none) | --------L--------P--I------LQE |
| Leptolyngbya sp 427724983 | (none) | ------HLP--------A---------LQE |
| Synechococcus elongatus 56750600 | (none) | ------IMW-----------L------SRE |
| Cohnella laeviribosi 517835836 | (none) | --------F-----------F---S-QLAE |
| Brevibacillus laterosporus 550166487 | (none) | --------W-----------R------LFE |
| Paenibacillus ginsengihumi 518366183 | (none) | --------F------------------LEE |
| Paenibacillus sanguinis 517583346 | (none) | --------F-----------G------LQE |
| Paenibacillus elgii 498187320 | (none) | --------F-----------L------LEE |
| Paenibacillus sp 251794106 | (none) | ------T-Y-----------H------LAE |
| Paenibacillus sp 546577354 | (none) | ------A-W---------LRG---D-SLAE |
| Paenibacillus polymyxa 310639532 | (none) | --------M-----------G------LRE |
| Thermobacillus composti 430751789 | (none) | --------F---------------S-MLDE |
| Paenibacillus dendritiformis 493728944 | (none) | ------------------------R-QLQE |
| Desulfotomaculum ruminis 334338847 | (none) | --------M-----------L------LAE |
| Prevotella sp 546844924 | (none) | --------M-----------T------LKE |
| Acetohalobium arabaticum 302391850 | (none) | --------M-----------L-----MLAE |
| Heliobacillus mobilis 27262196 | (none) | --------F-----------P------LRE |
| Kyrpidia tusciae 295694784 | (none) | --------------------M------LRE |
| Chlorobium luteolum 78186158 | (none) | ------------------CHG------LEE |
| Chlorobium phaeobacteroides 119358065 | (none) | ------------------QQG------LEE |
| Chlorobium tepidum 21674748 | (none) | --------------------A------LEE |
| Chloroherpeton thalassium 193213974 | (none) | ------NDF-----------E------LEE |
| Bacteroides sp 262383577 | (none) | --------------------D------FAE |
| Bacteroides fragilis 492201930 | (none) | ------------------------LI-A-E |
| Alistipes putredinis 167752802 | (none) | -------MY-----------P------IRE |
| Pedobacter sp 149280739 | (none) | --------M-----------I------VAE |
| Pedobacter saltans 325104754 | (none) | --------F-----------K------LAE |
| Flavobacterium johnsoniae 146301230 | (none) | --------------------A------IRE |
| Chitinophaga pinensis 256034427 | (none) | --------M-----------P------LAE |
| Marivirga tractuosa 313676446 | (none) | --------------------E------LAE |
| Salisaeta longa 551207634 | (none) | -------MY-----------A-----VLEE |
| Rhodothermus marinus 345302083 | (none) | ------ATW-----------P------LAE |
| Bigelowiella natans Bigna1 87812 | (none) | ---------------------------TRK |
| Chlorella variabilis 307110653 | (none) | --------------------A------LAE |
| Coccomyxa subellipsoidea 545355350 | (none) | --------------------GHAP---LEE |
| Volvox carteri 302845584 | (none) | -------TY-----------ASHP---LEE |
| Chlamydomonas reinhardtii 159473679 | (none) | --------M-----------SVHP---LDE |
| Micromonas pusilla 303271165 | (none) | --------M---A-L-----APHH---LEE |
| Micromonas sp 255080870 | (none) | --------M---P-M-----APAH---LEE |
| Bathycoccus prasinos 424513657 | (none) | --------M-TTA-A-----A------LEE |
| Ostreococcus tauri 308802007 | (none) | --------M-----------V------LSE |
| Selaginella moellendorffii 302794630 | (none) | --------M-----------GPVH---LSE |
| Physcomitrella patens 168048902 | (none) | --------------------V------LAE |
| Vitis vinifera 297737712 | (none) | ---------------------SHP---LAE |
| Medicago truncatula 217072004 | (none) | -------MY---QGLQIS--SLHP---LAE |
| Ricinus communis 255570096 | (none) | ---------------LTL--SSHP---LAE |
| Arabidopsis thaliana 18379203 | (none) | ----------------F---SSHPAV-LAE |
| Populus trichocarpa 224101821 | (none) | ----------------VS--SSHP---LAE |
| Sorghum bicolor 242045540 | (none) | --------M---A-L-----NARP--DLAE |
| Oryza sativa 115480575 | (none) | --------M---ARL-----S-LP--DLSE |
| Brachypodium distachyon 357159945 | (none) | --------M---A-L-----SARP--DLSE |
Columns
None of the columns has a description.
