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Matrix 21788 of Study 15669
Citation title: "Gene transfers shaped the evolution of de novo NAD+ biosynthesis in eukaryotes".
Study name: "Gene transfers shaped the evolution of de novo NAD+ biosynthesis in eukaryotes".
This study is part of submission 15669
(Status: Published).
Matrices
Title: Tryptophan 2,3-Dioxygenase Alignment
Rows
| Taxon Label | Row Segments | Characters 1?–30 |
|---|---|---|
| Homo sapiens 119625291 | (none) | MSGCPFGYTFKKLPVEGSEEDKTGVNRA-- |
| Mus musculus 793931 | (none) | MSGCPFGYTLKNLSMEDNEEDRTGVNRA-- |
| Monodelphis domestica 126331449 | (none) | MSGCPFGYAWNRLRLED-NEDKAGINKA-- |
| Ornithorhynchus anatinus 149412029 | (none) | MSGCPFGYAFSKLYLEDCEEDKKGVNKA-- |
| Gallus gallus 118089765 | (none) | MSGCPFLYKFSKLSLKDEKGDKEGINKA-- |
| Xenopus laevis 148226458 | (none) | MSGCPFHFTFSELSLEDKHEDNEGLNKA-- |
| Danio rerio 41054107 | (none) | MSGCPFQLLSS-NPRQAEEEDGGGVNKA-- |
| Ciona intestinalis 198412883 | (none) | MACPYLKRRH-SEPVLNLSSQ-GKNKIT-- |
| Branchiostoma floridae 260832902 | (none) | QEGKN---------------------ML-- |
| Nematostella vectensis 156408247 | (none) | MSCPYA----------GDSDS-TAVTDE-- |
| Caenorhabditis elegans 17552370 | (none) | MACPYLLTHRVTFMEGGEECQ-GVNKVE-- |
| Glossina morsitans 289741723 | (none) | MSCPYG--------TNGSEHD-NAIPLN-- |
| Nasonia vitripennis 156553310 | (none) | MACPVG-----------DDAS-VGTCLT-- |
| Daphnia pulex 321472884 | (none) | MAEH-------------------------- |
| Strongylocentrotus purpuratus 72166152 | (none) | MSCPFG---------GGNRVP-GGTGKD-- |
| Salpingoeca rosetta 514688509 | (none) | MEQAAKSSLADVASATGIVR---------- |
| Monosiga brevicollis 167533788 | (none) | MLTVFSP--THTYTHTHMQIS-FLSLSLDG |
| Anolis carolinensis 327274029 | (none) | MSGCPFQFNFNKLSLDDGEGDKEGLNKA-- |
| Drosophila melanogaster 17530891 | (none) | MSCPYA---------NGNDHD-SAVPLT-- |
| Taeniopygia guttata 224049667 | (none) | MSQCPFLFNFNKLSLEDENDDKEGINKA-- |
| Lygus lineolaris 307634530 | (none) | MRTFRT-------PREGKKE---ECPLG-- |
| Bombus terrestris 340710426 | (none) | MACPLS-------AEDHETDH-ETDQLA-- |
| Chlamys farreri 63099708 | (none) | MSEAD---------------------SN-- |
| Aedes aegypti 157134823 | (none) | MSCPVG---------H-NGDP-GGQRLG-- |
| Capsaspora owczarzaki 320165703 | (none) | MPLAAASSGA------AGTST-DAASSG-- |
| Dictyostelium discoideum 66825725 | (none) | MSGCQF---------------MSIDAQS-- |
| Dictyostelium fasciculatum 328872973 | (none) | MDNNNK---------------MSMEVNK-- |
| Dictyostelium purpureum 330822498 | (none) | MSGCQF---------------MALDAHK-- |
| Polysphondylium pallidum PPA1378454 | (none) | MIKALSKSIDEEERKTGPNVSPHVESMIVI |
| Guillardia theta 551679320 | (none) | MDAMLVSRLRQVYKGLFQPNK-PVLKMR-- |
| Galdieria sulphuraria 545706205 | (none) | MAENTH------YT--EWPMS-ALDTN--- |
| Pyropia yezoensis 24265 g5980 | (none) | MSPPSG------NG--G----------AAG |
| Chondrus crispus 546300535 | (none) | MSLPLL------QP--IEDPS-ALAQL--- |
| Cyanidioschyzon merolae 544218023 | (none) | MPCPFGEDYEQDYWADGDEME-PLESTCCA |
| Naegleria gruberi 290978340 | (none) | MDSHTH--------SSSSDHS--------- |
| Perkinsus marinus 294891627 | (none) | MCQV-----------------------R-- |
| Bacteriovorax marinus 301165577 | (none) | MKK------------------------K-- |
| Bacteriovorax sp 544861464 | (none) | MQ-------------------------K-- |
| Bdellovibrio exovorus 471262002 | (none) | MH-------------------------K-- |
| Methylobacter marinus 519004081 | (none) | M--------------------------K-- |
| Rheinheimera sp 336314526 | (none) | MQ-------------------------K-- |
| Alteromonas sp 333894040 | (none) | MK-------------------------K-- |
| Salinimonas chungwhensis 517814363 | (none) | MK-------------------------R-- |
| Kangiella koreensis 256822764 | (none) | MQ-------------------------K-- |
| Gallaecimonas xiamenensis 495761590 | (none) | MR-------------------------K-- |
| Alishewanella aestuarii 495882840 | (none) | MQ-------------------------K-- |
| Idiomarina xiamenensis 495764639 | (none) | MA-------------------------K-- |
| Methylosarcina fibrata 522052975 | (none) | MNT--------------------------- |
| Beutenbergia cavernae 229819457 | (none) | MTERRP--------------------SA-- |
| Bdellovibrio bacteriovorus 426403772 | (none) | M-K--------------------------- |
| Lewinella persica 522058491 | (none) | MSKQE------------------------- |
| Xanthomonas fuscans 495242684 | (none) | ------------------------------ |
| Ralstonia solanacearum 300702639 | (none) | M----------------------------- |
| Sorangium cellulosum 521468545 | (none) | ------------------------------ |
| Haliangium ochraceum 262193550 | (none) | MT---------------------------- |
| Deinococcus peraridilitoris 429220318 | (none) | MSTQEP------------------------ |
| uncultured archaeon 291333601 | (none) | MGLLRT------------------------ |
| uncultured euryarchaeote 374724098 | (none) | MTEG-------------------------- |
| Isosphaera pallida 320102611 | (none) | MIGTFS------------------------ |
| Streptosporangium roseum 271968197 | (none) | MIVD-------------------------- |
| Streptomyces scabrisporus 522037133 | (none) | MS---------------------------- |
| Actinomadura madurae 545322196 | (none) | MA---------------------------- |
| Stackebrandtia nassauensis 291299373 | (none) | MANDLD------------------------ |
| Kribbella catacumbae 521058334 | (none) | MTGRWD------------------------ |
| Xanthomonas campestris 21111417 | (none) | MPVDKN-----------------GIHTD-- |
| Xanthomonas oryzae 84369447 | (none) | MPVDKN-----------------GIHTD-- |
| Geobacillus thermodenitrificans 138896805 | (none) | MQNKQN-----------------GIHTD-- |
| Stenotrophomonas maltophilia 190576159 | (none) | MSVDNN-----------------GIHTD-- |
| Burkholderia sp 307726460 | (none) | MNRPRKRN--PALE-TVKSTS-EPLIAF-- |
| Streptomyces viridochromogenes 302552990 | (none) | MSHEAY----------------ETPHLD-- |
| Ralstonia eutropha 116695361 | (none) | MNDTVK------------------ASPS-- |
| Variovorax paradoxus 239814454 | (none) | MSTEKS--------------E--KAQLD-- |
| Myxococcus xanthus 108757108 | (none) | MPGPMN-----------------GIITD-- |
| Micromonospora aurantiaca 302869392 | (none) | MTVEQTRPVTPQERAARAARN-GEPTLE-- |
| Croceibacter atlanticus 298207109 | (none) | MSNIDPIQLEKKFKNSGQDMGSYLDGLL-- |
| Pseudomonas aeruginosa 152988736 | (none) | MCPCPH------------EAEWHNAALD-- |
| Dokdonia donghaensis 85818219 | (none) | MKKTIQNQLDDKYEKIDQDLDDHLEGLL-- |
| Deinococcus geothermalis 94972320 | (none) | MVDLQRDMADAGDRHVTDRDAPERAQLN-- |
| Flavobacteria bacterium 126626008 | (none) | MEVTPKNQLHDKFEAINQNTATHLEGLL-- |
| Flavobacteria bacterium 89889982 | (none) | MSQEISQLLEEKFKNSGQDMLSYLDGLL-- |
| Maribacter sp 305665650 | (none) | MSDINK-KLQKKYEDLGENHETYLEGLL-- |
| Flavobacterium johnsoniae 146298494 | (none) | MNLTDNKEIDLKFQAINQKTDVQLEGLL-- |
| Flavobacterium psychrophilum 150024338 | (none) | MTNKFEQEIDEKYKAINQKTEAHLEGLL-- |
| Leeuwenhoekiella blandensis 497464312 | (none) | MSFKSNEALKDKFDAMGQNLEHQLEGFA-- |
| Gramella forsetii 120437493 | (none) | MEIKPELKLEEKFKNSGQDMGSYLDGLL-- |
| Polaribacter irgensii 88801957 | (none) | MEREEIKAIEEKYEKLGVPVDAMLEGLL-- |
| Polaribacter sp 86134912 | (none) | MNREEIKAIEEKYDKLGVPVDAMLEGLL-- |
| Robiginitalea biformata 260061498 | (none) | MENKERRKLEAKYRDSGQDLSSYLDGLL-- |
| Psychroflexus torquis 408489859 | (none) | MNEELLKQLKNKYEALGENPETYLKGLL-- |
| Flexibacter litoralis 392398826 | (none) | MTQEEIKAINEKYKNLGENPDSYLKGLL-- |
| Cytophaga hutchinsonii 110637813 | (none) | MHGHGSEQLTSHFEKDGQDVATHLEGLL-- |
| Echinicola vietnamensis 431798335 | (none) | SKEQPSQLLHEKYKASGQDMLSYLEGLL-- |
| Belliella baltica 390944555 | (none) | MTPAETELLQRKFKASGQDLSSYLEGLL-- |
| Salinispora tropica 145596043 | (none) | MERTELRPATPRQRATRAARN-GEPTLE-- |
| Rhizobium tropici 440224209 | (none) | MTYDPS-----------------GAEMD-- |
| Bacillus oceanisediminis 518209164 | (none) | MKETHQ---------------EKSIHTD-- |
| Brevundimonas diminuta 489258297 | (none) | MTEAND-------------GH-IETAKH-- |
| Bacillus cereus 446584597 | (none) | MKENEK-----------------GIHTD-- |
Columns
None of the columns has a description.
