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Matrix 23499 of Study 16190
Citation title: "Nodal signalling determines biradial asymmetry in Hydra".
Study name: "Nodal signalling determines biradial asymmetry in Hydra".
This study is part of submission 16190
(Status: Published).
Matrices
Title: LhX/Lim transcription factor gene family alignment
Description: Fig E4b
Rows
| Taxon Label | Row Segments | Characters 1?–30 |
|---|---|---|
| Danio rerio Lmx1b2 | (none) | CEGCHRPI--SDRFLL--RMN-DSSWHEEC |
| Mus musculus Lmx1a | (none) | CEGCQRVI--SDRFLL--RLN-DSFWHEQC |
| Lottia gigantea Lmx1 | (none) | CTGCQMSI--EDKFLL--KVM-DNSWHETC |
| Saccoglossus kowalevskii Lmx1 | (none) | CAGCQQPI--EDRFLM--RVM-ENSWHEQC |
| Nematostella vectensis Lmx1 | (none) | CTGCNEPI--EDRFLM--KVV-DEAWHESC |
| Acropora digitifera Lmx1 | (none) | ---------------M--KVM-EEPWHENC |
| Tribolium castaneum Lmx1a | (none) | --MCCRPI--NDRFLL--RIM-DVSYHEHC |
| Drosophila melanogaster Lmx1a | (none) | CAHCCQPI--CDRYIM--RVV-ENSFHEGC |
| Tribolium castaneum Lmx1b | (none) | CEGCGQKI--HDRYLM--RVA-DASWHEHC |
| Drosophila melanogaster Lmx1b | (none) | CEGCGQKI--HDRFLM--NVG-DANWHEQC |
| Danio rerio Islet | (none) | CVGCGNQI--HDQYIL--RVSPDLEWHAAC |
| Mus musculus Islet1 | (none) | CVGCGNQI--HDQYIL--RVSPDLEWHAAC |
| Branchiostoma floridae Islet1 | (none) | CVGCGSHI--HDQYIL--RVAPDLEWHAAC |
| Saccoglossus kowalevskii Islet1 | (none) | CVGCGNQI--QDQFIL--RVAPDLEWHASC |
| Nematostella vectensis Islet | (none) | CVGCGSQI--HDQYIL--RVAPDLEWHASC |
| Acropora digitifera Islet | (none) | CVGCGSQI--QDQYIL--RVAPDLEWHAGC |
| Lottia gigantea Islet1 | (none) | CVGCGSNI--HDQFIL--RVAPDLEWHASC |
| Ciona intestinalis Islet1 | (none) | CVGCGSPI--HDQYIL--RVAPNLEWHAGC |
| Drosophila melanogaster Tailup | (none) | CVGCGGQI--HDQYIL--RVAPDLEWHAAC |
| Trichoplax adhaerens Islet | (none) | CSGCGGKI--NDRYIL--QVAPDMQYHAAC |
| Mnemiopsis leidyi Islet | (none) | CAGCRCPI--TDQFIL--RVAPNLEWHASC |
| Branchiostoma floridae Lhx6/8 | (none) | CTGCGGPI--QDKFLL--KVGER-QWHVKC |
| Saccoglossus kowalevskii Lhx6/8 | (none) | CLGCTSPI--QDRYLL--KVGTR-SWHVRC |
| Nematostella vectensis Lhx6/8 | (none) | CVGCEAKI--VDRYLV--KVSGR-AWHTKC |
| Acropora digitifera Lhx6/8 | (none) | CAGCKGRI--MDRYLV--KVSGK-AWHTSC |
| Tribolium castaneum Arrowhead | (none) | CSACGEPI--SDKFLL--EVSGR-SWHARC |
| Drosophila melanogaster Arrowhead | (none) | CAACGEPI--SDRFFL--EVGGC-SWHAHC |
| Hydra magnipapillata Lhx6/8b | (none) | ------------------------------ |
| Cladonema pacificum Lhx6/8 | (none) | ------------------------------ |
| Lottia gigantea Lhx6/8 | (none) | CFGCGGMI--HDRYLL--RVNGC-SFHVDC |
| Mus musculus Lhx8 | (none) | CSSCGLEI--VDKYLL--KVNDL-CWHVRC |
| Danio rerio Lhx8 | (none) | CTSCGTEI--VDKYLL--KVNDM-CWHVRC |
| Danio rerio Lhx6 | (none) | CASCGLEI--LDRYLL--KVNNL-IWHVRC |
| Mus musculus Lhx6 | (none) | CSSCGLEI--LDRYLL--KVNNL-IWHVRC |
| Danio rerio Lhx2 | (none) | CAGCGGKI--SDRYYL--LAVDK-QWHMRC |
| Mus musculus Lhx2 | (none) | CAGCGGKI--SDRYYL--LAVDK-QWHMRC |
| Mus musculus Lhx9 | (none) | CAGCGGKI--SDRYYL--LAVDK-QWHLRC |
| Lottia gigantea Lhx2/9 | (none) | ------------------MAVDK-QWHVQC |
| Saccoglossus kowalevskii Lhx2/9 | (none) | CAGCGGRI--LDRYYL--LAVDK-QWHMQC |
| Branchiostoma floridae Lhx2/9 | (none) | CGGCGEKI--QDRFFL--HAVDR-QWHSAC |
| Nematostella vectensis Lhx2/9 | (none) | CAGCGSRI--LERFYL--MAVDQ-EWHADC |
| Drosophila melanogaster Apterus | (none) | CSGCGRQI--QDRFYL--SAVEK-RWHASC |
| Trichoplax adhaerens Lhx2/9 | (none) | CAGCGRSI--MDQEYLGIQKTDK-KWHIQC |
| Ciona intestinalis Lhx3/4 | (none) | CTGCDHHI--FDRYIL--KVQDK-PWHSQC |
| Branchiostoma floridae Lhx3/4 | (none) | CAGCEQVI--LDRFIL--KVLDR-SWHAKC |
| Lottia gigantea Lhx3/4 | (none) | -------------FIL--KVLER-SWHSKC |
| Mnemiopsis leidyi Lhx3/4 | (none) | CAGCDQPI--TDRFIL--KVMEK-NWHSAC |
| Saccoglossus kowalevskii Lhx3/4 | (none) | CSGCEHPI--LDRFIL--KVQDR-AWHSKC |
| Mus musculus Lhx4 | (none) | CAGCNQHI--LDKFIL--KVLDR-HWHSSC |
| Danio rerio Lhx4 | (none) | CAGCSQHI--LDKFIL--KVLDR-HWHSKC |
| Danio rerio Lhx3 | (none) | CAGCNQHI--VDRFIL--KVLDR-HWHSKC |
| Mus musculus Lhx3 | (none) | CAGCDQHI--LDRFIL--KALDR-HWHSKC |
| Tribolium castaneum Lhx3/4 | (none) | CGGCHELI--LDRFIL--KVADR-TWHAKC |
| Drosophila melanogaster Lhx3/4 | (none) | CGGCHELI--LDRFIL--KVLER-TWHAKC |
| Amphimedon queenslandica Lhx3/4 | (none) | CAGCNTRI--FDRFIL--RVQDK-SWHAKC |
| Nematostella vectensis Lhx3/4-like | (none) | CAGCDEQFGHADRFIL--QALDR-HWS?-C |
| Trichoplax adhaerens Lhx1/5a | (none) | CTGCNQLI--QDKFLL--KVADD-LWHEDC |
| Mnemiopsis leidyi Lhx1/5 | (none) | CAGCNGKIH--DKFLM--KVLDK-TWHSEC |
| Ciona intestinalis Lhx1/5 | (none) | CSRCNHVIS--NKFVF--QVDGK-FWHGDC |
| Danio rerio Lhx1 | (none) | CAGCERPIL--DRFLL--NVLDR-AWHIKC |
| Mus musculus Lhx1 | (none) | CAGCKRPIL--DRFLL--NVLDR-AWHVKC |
| Danio rerio Lhx5 | (none) | CAGCERPIL--DRFLL--NVLDR-AWHAKC |
| Mus musculus Lhx5 | (none) | CAGCERPIL--DRFLL--NVLDR-AWHIKC |
| Saccoglossus kowalevskii Lhx1/5 | (none) | CAGCDRPIL--DRFLL--NVLDR-AWHVKC |
| Lottia gigantea Lhx1/5 | (none) | CAGCERPIS--DRFLL--NVLDR-AWHAKC |
| Branchiostoma floridae Lhx1/5 | (none) | CAGCERPVL--DRFLL--NVLDR-AWHAKC |
| Trichoplax adhaerens Lhx1/5b | (none) | CAGCQLPIC--DKFLL--SVLDR-KWHTKC |
| Tribolium castaneum Lhx1/5 | (none) | CAACDKPIL--DKFLL--NVLER-TWHADC |
| Drosophila melanogaster Lhx1/5 | (none) | CAGCNKPIL--DKFLL--NVLER-AWHASC |
| Acropora millepora Lhx1/5 | (none) | CAGCELPIS--DKFLL--KVLDR-LWHIKC |
| Acropora digitifera Lhx1/5 | (none) | CAGCELPIS--DKFLL--KVLDR-LWHIKC |
| Nematostella vectensis Lhx1/5 | (none) | CAGCQLPIA--DKFLL--KVLDG-VWHAQC |
| Amphimedon queenslandica Lhx1/5 | (none) | CAGCSEPIM--ERFLM--KVLDK-SWHVQC |
| Hydra magnipapillata Lhx1/5 | (none) | CSKCSLPMN--DKFVA--KILDM-IMHEDC |
| Nematostella vectensis Lmo4 | (none) | CAGCGEKII--DRFLL--LALDQ-YWHVNC |
| Saccoglossus kowalevskii Lmo4 | (none) | CAGCGVKIM--DRFLL--HALDR-YWHTGC |
| Mus musculus Lmo4 | (none) | CAGCGGKIA--DRFLL--YAMDS-YWHSRC |
| Hydra magnipapillata Lmx1 | (none) | CHECKSPIL--DSFLL--NIGGNEYWHECC |
| Hydra magnipapillata Lhx6/8a | (none) | CDACHEIIY--DRYIS--I?GNR-KLHEEC |
| Mnemiopsis leidyi Lmx1 | (none) | CTACRLPIE--ESLLM--KVNDV-FWHEQC |
Columns
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