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Matrix 30079 of Study 16424
Citation title: "Bacterial proteins pinpoint a single eukaryotic root.".
Study name: "Bacterial proteins pinpoint a single eukaryotic root.".
This study is part of submission 16424
(Status: Published).
Matrices
Title: Eukaryotic root filtered EUBAC dataset
Rows
| Taxon Label | Row Segments | Characters 1?–30 |
|---|---|---|
| Acanthamoeba castellanii | (none) | G{GT}-{ACG}---GA{ACG}{ACG}{AGT |
| Acrasis kona | (none) | G{ACG}-{CG}-{ACG}-GA{ACG}{ACG} |
| Acropora digitifera | (none) | ???????????????----?{CG}-----{ |
| Agrobacterium tumefaciens | (none) | G{GT}{ACG}T-{ACG}-GA{ACG}{ACG} |
| Amphimedon queenslandica | (none) | G{GT}-{ACG}A{ACG}-GA{ACG}{ACG} |
| Andalucia godoyi | (none) | G{AG}{ACG}T-{ACG}-GA{ACG}{ACG} |
| Aplanochytrium kerguelense | (none) | G{GT}{ACG}T-{ACG}-GA{ACG}{ACG} |
| Arabidopsis thaliana | (none) | ?????????????????????????????? |
| Batrachochytrium dendrobatidis | (none) | GA{ACG}{AG}{CG}{ACG}-GA{ACG}{A |
| Bigelowiella natans | (none) | G{AG}-T-{ACG}-AA{ACG}{ACG}{AGT |
| Bolidomonas pacifica | (none) | G{GT}{ACG}T-{ACG}-GA{ACG}{ACG} |
| Burkholderia ambifaria | (none) | G{GT}-{ACG}-C-GA{ACG}-{AGT}{AC |
| Capsaspora owczarzaki | (none) | G{AG}{ACG}{ACG}-{ACG}-GA{ACG}{ |
| Chlorella variabilis | (none) | ??--{AC}{ACG}-GA{ACG}{ACG}{AGT |
| Chondrus crispus | (none) | G{GT}-{CG}-{ACG}-GA{ACG}{ACG}{ |
| Collodictyon triciliatum | (none) | G{GT}{ACG}T-{ACG}-GA{ACG}{ACG} |
| Cryptomonas paramecium | (none) | G{GT}{ACG}{CG}-{ACG}-GA{ACG}{A |
| Desulfovibrio vulgaris | (none) | G{GT}-{ACG}-{ACG}-GA{ACG}{ACG} |
| Dictyostelium discoideum | (none) | G{ACG}{ACG}{ACT}-{ACG}-GA{ACG} |
| Ectocarpus siliculosus | (none) | G{AG}{ACG}T-{ACG}-GA{ACG}{ACG} |
| Ephydatia muelleri | (none) | G{GT}-{ACG}A{ACG}-GA{ACG}{ACG} |
| Escherichia coli | (none) | G{GT}-{ACG}-{ACG}-GA{ACG}{ACG} |
| Eutreptiella gymnastica | (none) | G{CT}{ACG}----GA{ACG}{ACG}{AGT |
| Filamoeba nolandi | (none) | G{GT}-{GT}-{ACG}-GA{ACG}{ACG}{ |
| Galdieria sulphuraria | (none) | G{GT}{ACG}{CG}---GA{ACG}{ACG}{ |
| Geobacter metallireducens | (none) | G{AG}-{CG}-{ACG}-GA{ACG}-{AGT} |
| Gonapodya prolifera | (none) | ?????????????????????????????? |
| Goniomonas avonlea | (none) | G{AG}-T---GA{ACG}{ACG}{AGT}{AC |
| Guillardia theta | (none) | G{GT}-{AG}-{ACG}-GA{ACG}{ACG}{ |
| Heterosigma akashiwo | (none) | G{AG}-T-{ACG}-GA{ACG}{ACG}{AGT |
| Homo sapiens | (none) | G{AG}-{ACG}A{ACG}-GA{ACG}{ACG} |
| Jakoba libera | (none) | G{GT}-T-{ACG}-GA{ACG}{ACG}{AGT |
| Karenia brevis | (none) | G{GT}{ACG}{CG}-{ACG}-GA{ACG}{A |
| Leishmania major | (none) | G{CT}{ACG}{CG}-{ACG}-GA{ACG}{A |
| Lingulodinium polyedrum | (none) | G{GT}{ACG}{CG}-{ACG}-GA{ACG}{A |
| Lottia gigantea | (none) | G{AG}-{ACG}A{ACG}-GA{ACG}{ACG} |
| Magnetospirillum magneticum | (none) | GT-T-{ACG}-GA{ACG}{ACG}{AGT}{A |
| Malawimonas californiana | (none) | G{GT}-{ACG}-{ACG}-GA{ACG}{ACG} |
| Malawimonas jakobiformis | (none) | G{GT}-{ACG}-{ACG}-GA{ACG}{ACG} |
| Micromonas sp | (none) | G{AG}{ACG}T-{ACG}-GA{ACG}{ACG} |
| Monosiga brevicollis | (none) | G{GT}-{ACG}{CG}{ACG}-GA{ACG}{A |
| Monosiga ovata | (none) | G{GT}-{ACG}{CG}{ACG}-GA{ACG}{A |
| Mortierella verticillata | (none) | G--{AG}{CG}{ACG}-GA{ACG}{ACG}{ |
| Myxococcus xanthus | (none) | G{AG}---{ACG}-G-{ACG}{ACG}{AGT |
| Naegleria gruberi | (none) | G{GT}{ACG}{CG}---G-{ACG}{ACG}{ |
| Nematostella vectensis | (none) | G{GT}{ACG}-A{ACG}-GA{ACG}{ACG} |
| Oryza sativa | (none) | G-{ACG}C-{ACG}-GA{ACG}{ACG}{AG |
| Ostreococcus lucimarinus | (none) | G{GT}{ACG}T-{ACG}-GA{ACG}{ACG} |
| Oxytricha trifallax | (none) | G{GT}-{CG}-{ACG}-GA{ACG}{ACG}{ |
| Paramecium tetraurelia | (none) | G--A-{ACG}-GA{ACG}{ACG}{AGT}{A |
| Pelagibacter ubique | (none) | G{GT}-T---GA{ACG}{ACG}{AGT}{AC |
| Perkinsus marinus | (none) | G{GT}-{CG}-{ACG}-GA{ACG}{ACG}{ |
| Phanerochaete chrysosporium | (none) | G{ACT}-{GT}T{ACG}-GA{ACG}{ACG} |
| Physarum polycephalum | (none) | G{GT}{ACG}A-{ACG}{ACG}GA{ACG}{ |
| Physcomitrella patens | (none) | G{CG}-AT{ACG}-GA{ACG}{ACG}{AGT |
| Phytophthora infestans | (none) | G--T---GA{ACG}{ACG}{AGT}{ACG}- |
| Planctomyces limnophilus | (none) | G--{ACG}-{ACG}-G-{ACG}{ACG}{AG |
| Plasmodium falciparum | (none) | G{GT}-A-{ACG}-GA{ACG}{ACG}{AGT |
| Platyophrya macrostoma | (none) | G{GT}{ACG}A-{ACG}-GA{ACG}{ACG} |
| Polysphondylium pallidum | (none) | G{ACG}{ACG}{ACT}-{ACG}-GA{ACG} |
| Puniceispirillum marinum | (none) | G{GT}{ACG}{CG}-{ACG}-GA{ACG}{A |
| Reclinomonas americana | (none) | G{AG}-T-{ACG}-GA{ACG}{ACG}{AGT |
| Rhizopus oryzae | (none) | G--{AG}{CG}{ACG}-GA{ACG}{ACG}{ |
| Rhodopirellula baltica | (none) | G{AG}-T-{ACG}-GA{ACG}{ACG}{AGT |
| Rickettsia conorii | (none) | G{GT}-T---{CG}A{ACG}{ACG}{AGT} |
| Salpingoeca rosetta | (none) | G{CG}-{ACG}{CG}{ACG}-GA{ACG}{A |
| Saprolegnia parasitica | (none) | G{AG}-T---GA{ACG}{ACG}{AGT}{AC |
| Schizochytrium aggregatum | (none) | G{CG}-T---GA{ACG}{ACG}{AGT}{AC |
| Seculamonas ecuadoriensis | (none) | G{AG}-T-{ACG}-GA{ACG}{ACG}{AGT |
| Solibacter usitatus | (none) | G{GT}{ACG}{ACG}{ACG}{ACG}{CG}G |
| Spizellomyces punctatus | (none) | GA{ACG}{AG}A{ACG}-GA{ACG}{ACG} |
| Stereomyxa ramosa | (none) | G--{ACG}---GA{ACG}{ACG}{AGT}{A |
| Tetrahymena thermophila | (none) | G-{ACG}{CG}-{ACG}-GA{ACG}{ACG} |
| Tetraselmis astigmatica | (none) | G{GT}{ACG}T-{ACG}-GA{ACG}{ACG} |
| Thalassiosira pseudonana | (none) | G{AG}{ACG}T-{ACG}-GA{ACG}{ACG} |
| Thecamonas trahens | (none) | GT{ACG}T-{ACG}-GA{ACG}{ACG}{AG |
| Toxoplasma gondii | (none) | G{AG}-T-{ACG}-GA{ACG}{ACG}{AGT |
| Tuber melanosporum | (none) | G{AG}-{ACT}-{ACG}-GA{ACG}{ACG} |
| Ustilago maydis | (none) | GA{ACG}{GT}A{ACG}-G-{ACG}{ACG} |
| Yarrowia lipolytica | (none) | G{GT}-{AG}T{ACG}-GA{ACG}{ACG}{ |
Columns
None of the columns has a description.
