@ARTICLE{TreeBASE2Ref23801,
author = {Patrick James Alexander and Michael D. Windham and James Beck and Ihsan A. Al-Shehbaz and Loreen Allphin and C Donovan Bailey},
title = {Weaving a Tangled Web: Divergent and Reticulate Speciation in Boechera fendleri sensu lato (Brassicaceae: Boechereae)},
year = {2014},
keywords = {apomixis, Boechera, hybrid speciation, low-copy nuclear loci, microsatellite markers, molecular systematics},
doi = {},
url = {http://},
pmid = {},
journal = {Systematic Botany},
volume = {},
number = {},
pages = {},
abstract = {Hybrid speciation is relatively common in plants compared to other well-studied groups. Polyploidy and apomixis are strongly associated with hybrid speciation, presumably due to the opportunities they provide for both reestablishing reproductive function in hybrids with incomplete chromosomal homology and creating rapid reproductive isolation in sympatry. Boechera, a species-rich genus closely related to Arabidopsis, is a particularly fertile ground for the study of hybrid speciation. Thirty-eight apomictic triploid hybrid species are currently recognized in Boechera, and recent research has shown that apomictic diploid hybrids, although very rare in angiosperms as a whole, are common in the genus. Given this evolutionary complexity, focused studies of individual species complexes are critical to understanding speciation and diagnosing biodiversity in Boechera. Here we analyze DNA sequences from seven nuclear loci and multilocus genotypes from 15 microsatellite markers in a group of closely related taxa formerly included in B. fendleri sensu lato. Our results support the recognition of all four species previously segregated from B. fendleri s.l., including three genetically distinct, sexual diploids (B. fendleri, B. spatifolia, and B. texana) and one apomictic triploid hybrid (B. porphyrea). We also identify four novel apomictic diploid hybrids (B. carrizozoensis, B. centrifendleri, B. sanluisensis, and B. zephyra) and at least two additional apomictic triploid hybrids. Our results reveal a complex network of relationships, with diverse sexual diploid species giving rise to an array of diploid and triploid hybrid lineages that have stabilized and spread by means of apomixis.}
}
Matrix 24673 of Study 16561

Citation title:
"Weaving a Tangled Web: Divergent and Reticulate Speciation in Boechera fendleri sensu lato (Brassicaceae: Boechereae)".

Study name:
"Weaving a Tangled Web: Divergent and Reticulate Speciation in Boechera fendleri sensu lato (Brassicaceae: Boechereae)".

This study is part of submission 16561
(Status: Published).
Matrices
Title: Boechera fendleri group with pistillata clones from Boechera carrizozoensis
Rows
Taxon Label |
Row Segments |
Characters 1?–30 |
Boechera stricta 400a |
(none)
|
GWWAWAWAWGC?WCWC??GCWCCCCGAW?A |
Boechera perennans 016 |
(none)
|
GWWAWAWAWGC?WCWC??GCWCCCCGAW?A |
Boechera perennans 133 |
(none)
|
GWWAWAWAWGC?WCWC??GCWCCCCGAW?A |
Boechera williamsii 367a |
(none)
|
GWWAWAWAWGC?WCWC??GCWCCCCGAW?A |
Boechera wyomingensis 015 |
(none)
|
GWWAWAWAWGCCWCWC??GCWCCCCGAW?A |
Boechera pendulina 168 |
(none)
|
GWGAWAWAWGCCWCWC??GCWCCCCAAW?A |
Boechera gracilipes 174 |
(none)
|
GWWAW?WAWGCWWCWC??GCWCCCCGAW?A |
Boechera nevadensis 013a |
(none)
|
GWWAWAWAWGC?WCWC??GCWCCCCGAW?A |
Boechera stricta 025a |
(none)
|
GWWAWAWAWGC?WCWC??GCWCCCCGAW?A |
Boechera spatifolia 124a |
(none)
|
GWWAWAWAWGC?WCWC??GCWCCCCGAW?A |
Boechera spatifolia 322a |
(none)
|
????WAWAWGC?WCWC??GCWCCCCGAW?A |
Boechera texana 150d |
(none)
|
GWWAWAWAWGCCWCWC??GCWCCCCAAW?A |
Boechera fendleri 226b |
(none)
|
GWWAWAWAWGC?WCWC??GCWCCCCGAW?A |
Boechera fendleri 229a |
(none)
|
GWWAWAWAWGC?WCWC??GCWCCCCGAW?A |
Boechera gracilipes 347a |
(none)
|
GWWAWAWAWGC?WCWC??GCWCCCCGAW?A |
Boechera carrizozoensis 196a P8 |
(none)
|
?????????????????????????????? |
Boechera carrizozoensis 196a P9 152a P5 |
(none)
|
?????????????????????????????? |
Boechera carrizozoensis 196a P1 |
(none)
|
?????????????????????????????? |
Boechera carrizozoensis 196a P4 |
(none)
|
?????????????????????????????? |
Boechera carrizozoensis 196a P2 |
(none)
|
?????????????????????????????? |
Boechera carrizozoensis 196a P5 |
(none)
|
?????????????????????????????? |
Boechera carrizozoensis 196a P7 |
(none)
|
?????????????????????????????? |
Boechera carrizozoensis 196a P3 |
(none)
|
?????????????????????????????? |
Boechera carrizozoensis 152a PC1 |
(none)
|
?????????????????????????????? |
Boechera carrizozoensis 152a P1 |
(none)
|
?????????????????????????????? |
Boechera carrizozoensis 152a P4 |
(none)
|
?????????????????????????????? |
Boechera carrizozoensis 152a P6 |
(none)
|
?????????????????????????????? |
Columns
Column |
Character Description |
1090
|
indel1 6 6
|
1096
|
indel7 27 27
|
1102
|
indel13 39 39
|
1108
|
indel19 58 58
|
1114
|
indel25 89 92
|
1120
|
indel31 189 190
|
1126
|
indel37 340 341
|
1132
|
indel43 375 382
|
1138
|
indel49 392 396
|
1144
|
indel55 719 719
|
1150
|
indel61 999 999
|
1156
|
indel67 1080 1080
|
1917
|
indel1 6 6
|
1923
|
indel7 352 354
|
1929
|
indel13 536 541
|
2607
|
indel1 4 4
|
2613
|
indel7 22 22
|
2619
|
indel13 89 89
|
2625
|
indel19 179 179
|
2631
|
indel25 458 458
|
2637
|
indel31 478 478
|
2643
|
indel37 592 592
|
3261
|
indel1 60 60
|
3267
|
indel7 101 101
|
3273
|
indel13 256 256
|
3279
|
indel19 293 293
|
3285
|
indel25 460 463
|
4824
|
indel1 30 30
|
4830
|
indel7 278 283
|
4836
|
indel13 382 386
|
4842
|
indel19 445 445
|
4848
|
indel25 472 472
|
4854
|
indel31 504 505
|
4860
|
indel37 746 748
|
4866
|
indel43 777 777
|
5811
|
indel1 9 9
|
5817
|
indel7 46 46
|
5823
|
indel13 127 128
|
5829
|
indel19 189 192
|
5835
|
indel25 228 228
|
5841
|
indel31 264 264
|
5847
|
indel37 312 314
|
5853
|
indel43 355 355
|
5859
|
indel49 418 442
|
5865
|
indel55 468 468
|
5871
|
indel61 471 472
|
5877
|
indel67 471 486
|
5883
|
indel73 472 483
|
5889
|
indel79 533 536
|
5895
|
indel85 616 616
|
5901
|
indel91 630 637
|
5907
|
indel97 646 659
|
5913
|
indel103 667 749
|
5919
|
indel109 687 690
|
5925
|
indel115 792 792
|
5931
|
indel121 826 850
|
5937
|
indel127 856 857
|
5943
|
indel133 867 872
|
5949
|
indel139 868 873
|
5955
|
indel145 901 901
|
5961
|
indel151 928 935
|