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Matrix 16272 of Study 168

About Citation title: "Phylogenetic relationships within the Rhodoreae (Ericaceae) with specific comments on the placement of Ledum.".
About This study was previously identified under the legacy study ID S2x2x96c16c47c06 (Status: Published).

Matrices

Title: alignment allin

Description: Copper-binding sites

Rows

Taxon Label Row Segments Characters 1?–30
Suberites domuncula tyr  (none) MRRHFNTEKDNATRELKSTYNFFIFLHAHS
Saccoglossus kowalevskii tyrd  (none) MRRNILEEVELYLIKAKSVYDLYTWYHAHG
Saccoglossus kowalevskii tyrc  (none) MRRNILEEVELYLIKAKSVYDFFTWFHAHS
Saccoglossus kowalevskii tyrb  (none) MRRNILSEVKSYLLNAKNEYDLFVWNHAHA
Saccoglossus kowalevskii tyra  (none) MRRNILSEVKSYLLNAKNEYDRFVWNHAHA
Branchiostoma floridae tyrh  (none) MRRNIRQEKKRYFDRAKSVWDFFVAAHAHE
Branchiostoma floridae tyre  (none) MRRNIRQEKKRYFDRAKSVWDFFVATHAHE
Branchiostoma floridae tyrf  (none) MRRNIREEKIRYFNRAKSVYDFFVATHAHE
Branchiostoma floridae tyrg  (none) MRRNIREEKDRYFDRAKSVWDFFVAMHAHK
Branchiostoma floridae tyrd  (none) MRRNIKEEKNCYFNRAKSVYDFLVATHAHD
Branchiostoma floridae tyrc  (none) MRRNIKEEKNRYFNRAKSVYDFLVAMHAHD
Branchiostoma floridae tyra  (none) MRRNIRKERARYMDRAKSVYDYFVAVHAHE
Branchiostoma floridae tyrb  (none) MRRNIRKERARYMDRAKSVYDYFVAVHAHE
Branchiostoma floridae tyri  (none) MRKNILEERSRYFNNTKSVWDFFMATHAHE
Branchiostoma floridae tyrl  (none) MRRNIREDVERYFNAAKSVYNYFVATHAHE
Branchiostoma floridae tyrk  (none) MRKNVMEDRVTYLNRAKSVYDLLVWMHAHD
Branchiostoma floridae tyrj  (none) MRKNVTEDRVTYLNRAKSVYDLLVWMHAHD
Branchiostoma floridae tyrm  (none) MRKNVLEEKAAYINNTKSAYDFFVYLQSQG
Capitella teleta tyr1  (none) MRRNALEEKARVFDLAKSVYDYLVHVHAHN
Mus musculus Tyr  (none) MRRNIFSEKNSYLTLAKNIYDLFVWMHAHE
Homo sapiens TYR  (none) MRRNIFPEKDAYLTLAKNIYDLFVWMHAHE
Branchiostoma floridae tyrA1  (none) MRRNIFWERTRALDESKTTYDALVWMHAHE
Branchiostoma floridae tyrC1  (none) MRRNIFWERRRALDESKTTYNVLAWMHAHE
Branchiostoma floridae tyrB1  (none) MRRNIFWERRRALDESKTTYNVLAWMHAHE
Ciona intestinalis tyr  (none) MRRNFTTDIQTILDESKSVYNLFVWMHAHE
Mus musculus Tyrp1  (none) MRRNLLEEKSRALDMAKSVYNYFVWTHSHE
Homo sapiens TYRP1  (none) MRRNLLEEKNRALDMAKSIYNYFVWTHSHE
Ciona intestinalis tyr1/2b  (none) MRQNIMEERNDILDLSKSIYDLFVWVHSHE
Ciona intestinalis tyr1/2a  (none) MRQNIMEEREDVLDLSKTIYDLFVWVHSHE
Branchiostoma floridae tyr1/2b  (none) MRKNIKEERRDALDQAKTIYNLFVWMHAHE
Branchiostoma floridae tyr1/2a  (none) MRKNIKEERRDALDQAKTIYNLFVWMHAHE
Mus musculus Tyrp2  (none) MRRNIHQEREGALDLAKSVYDFFVWLHSHQ
Homo sapiens TYRP2a  (none) MRQNIHQEREGALDLAKSVYDFFVWLHSHQ
Homo sapiens TYRP2b  (none) MRQNIHQEREGALDLAKSVYDFFVWLHSHQ
Clonorhis sinensis tyr1  (none) -----------------SIYDYFVFLHAHK
Schmidtea mediterranea tyr  (none) ------YDVFSVLNISKSIYDTMVYLHAHK
Capitella teleta tyr2  (none) MRKNALAEKKDTLTKLKSIYDTLTFLHAHN
Streptomyces tsukubaensis tyr  (none) MRKNQAAEKKDAVLEVKGIYDEFVAAHGHF
Streptomyces venezuelae tyr  (none) MRKNQADEKRNALLELKGRYDTFVTTHGHR
Bacillus megaterium tyr2  (none) MRKNVLTEKRRTVLILKGIYDRYIAWHAHM
Bacillus megaterium tyr1  (none) MRKNVLTEKRRTVLILKGIYDRYIAWHAHM
Nitrosomonas europeae tyr  (none) MRKDANAERAAAIRVLKGIYDRFVLRHIHR
Clonorchis sinensis tyr5  (none) MRRDIRDELNDVLARSWSVQYYITFLHSHD
Clonorchis sinensis tyr4  (none) MRRDIRDELNDVLARSWSVQYYITFLNNHD
Clonorchis sinensis tyr3  (none) MRRNIRDELEDVMYRSQSVQYWAAFIHSHD
Schistosoma japonicum tyr  (none) MRRDIKKELHTVIVLSQSIQYYLTYVHNHD
Schistosoma mansoni tyr4  (none) MRRDIRKELHTVIVLSQSVQYYITYLHNHD
Schistosoma mansoni tyr1  (none) MRRDIRKELHTVIVLSQSVQYYITYLHNHD
Schistosoma mansoni tyr3  (none) MRRDIRKELHTVIVLSQSVQYYITYLHNHD
Schistosoma mansoni tyr2  (none) MRYNILKKRKNVVTRMLDVQYLFSFIHNHE
Clonorchis sinensis tyr2  (none) MRRNVMKEKRDIVAHMPHLQYLIAYLHNHH
Dictyostelium discoideum tyr2  (none) MRKNAAEERNVAIVGLKSVYDQFVILHGHG
Dictyostelium discoideum tyr1  (none) MRKNAAEERNVAIVGLKSVYDQFVILHGHG
Candidatus nitrosopumilus tyr  (none) MRKNASIEREKAVLTLKNRYDEFVAIHAHG
Neurospora crassa tyr3  (none) MRRELRNYPELYLLGLRDSYYQVAGIHTHS
Neurospora tetrasperma tyr3  (none) MRRELRNYPELYLLGMRDSYYQVAGIHTHS
Neurospora crassa tyr2  (none) MRQEIRQDKELYILGLSVSWYGITGIHTHS
Neurospora tetrasperma tyr2  (none) MRQEILQDKELYILGLSVSWYGITGIHTHS
Neurospora crassa tyr1  (none) MRRNINPQWDLALSEMQLSYFSLAGIHPHG
Neurospora tetrasperma tyr1  (none) MRRNINPQWDLALSEMQLSYFSLAGIHPHG
Polysphondylium pallidum tyr1  (none) MRKSIRSERSYRVTILKGVYDKFVAEHIHG
Nematostella vectensis tyr4  (none) MRKDFEPERRQTLKKASSEYDRITKYHVHI
Nematostella vectensis tyr3  (none) MRKDFPEERRSALIRVSKTYDKLTHLHVHN
Nematostella vectensis tyr1  (none) MRKDFIGDRRAAFKKLTKEYDTIVRVHIHS
Nematostella vectensis tyr2  (none) MRGEFTEERARAFYKATDDFEKLLIEHHHM
Hydra magnipapillata tyr  (none) MRREFSEERDNTFKEFSEIYEKFVMSHIHE
Phragmatopoma californica tyr  (none) MRKAYRSERKDAIYQLKSNYDLFVNLHAHG
Brugia malayi TYR2  (none) MRKEYREERQSALNRLKGDYDKIAQWHAHS
Brugia malayi TYR4  (none) MRKEYRDERLNALNVLKGEYDRISMEHAHS
Caenorhabditis briggsae TYR2  (none) MRKEYRAERANALNTLKGEYDRLSRQHAHS
Caenorhabditis remanei TYR2  (none) MRKEYRDERRNALNTLKGEYDRLSRQHAHS
Caenorhabditis elegans TYR2  (none) MRKEYRDERRNALNTLKGEYDRLSRQHAHS
Caenorhabditis briggsae TYR5  (none) MRKEYRNERVNAIMQLKGEYDRLSVMHAHS
Caenorhabditis briggsae TYR1  (none) MRKEYRNERVNAIMQLKGEYDRLSVMHAHS
Caenorhabditis elegans TYR1  (none) MRKEYRNERQNALIQLKGEYDRLSVMHAHS
Caenorhabditis remanei TYR1  (none) MRKEYRNERTNAIIQLKGEYDRLSVMHAHS
Brugia malayi TYR3  (none) MRKEIRNERETAIQQLKGEYNRLADIHAHA
Brugia malayi TYR1  (none) MRKEYRQERKNALIQLKGEYDKLALIHAHS
Caenorhabditis briggsae TYR3  (none) MRKEYRDERNQAFRTLKGEYDRLARVHAHS
Caenorhabditis elegans TYR3  (none) MRKEYRDERQQAFRTLKGEYDRLARVHAHS
Caenorhabditis remanei TYR3  (none) MRKEYRDERNQALRTLKGEYDRLSRVHAHS
Caenorhabditis briggsae TYR4  (none) MRKEYRDERNAAFRALKGEYDRIGRIHAHS
Caenorhabditis remanei TYR4  (none) MRKEYRDERNAAFRALKGEYERIGRIHAHS
Caenorhabditis elegans TYR4  (none) MRKEYRDERNAAFRALKGEYERIGRIHAHS
Pinctada fucata tyr2  (none) MRQECRGARGGAIVDLKSRYDTIAGMHAHL
Pinctada fucata tyr3  (none) MRQECRGARGGAIVDLKSRYDTIAGMHAHL
Pinctada fucata tyr4  (none) MRQECRPDRNGAIVTLKSRYNTLAAMHAHN
Pinctada fucata tyr1  (none) MRRECREEWRNAIRRLKNRFDTMARIHAHD
Lottia gigantea tyr2  (none) MRRDCRDELSGAVQDAKNVLDAFSFLHAHG
Caenorhabditis briggsae TYR6  (none) MRRELREDRRDAWNAMKGLYNKIGRVHVHS
Caenorhabditis elegans TYR5  (none) MRRELRDDRINAWNAMKGLYNKIGRVHVHS
Caenorhabditis remanei TYR5  (none) MRKEIRSELRIAMNGLKTAWDLHTLVHAHW
Lottia gigantea tyr1  (none) MRKEYRAERDNAINALKNMYDAVAMFHAHG
Illex argentinus tyr1  (none) MRKEYREERDRAIVMLKNKFEIIADLHAHG
Illex argentinus tyr2  (none) MRKEYREERDRAIVMLKNKFEIIADLHAHG
Sepia officinalis tyr  (none) MHKEYREEREQAIIMLKNKFEVIADLHAHG
Sepia officinalis Hc  (none) MRKNVDDEILIALRNMQTGYQAISAYHLHG
Megathura crenulata Hc  (none) MRKNVDDEVLKALDDLQQGYQAIAGYHLHG
Nucula nucleus Hc  (none) MRKDVDAEVLEALKEVQTGYQAIAAYHIHG
Aplysia californica Hc  (none) MRKSVDEEILKSLREVNLGYAAIASYHLHG
Ciona intestinalis HcF  (none) MRKNLLEELHQGFTKFKFGYLNIAKWHWHN
Ciona intestinalis HcE  (none) MRKNLLEELHQGFTKFKFGYLNTVKWHWHQ
Ciona intestinalis HcG  (none) ------------------------------
Ciona intestinalis HcH  (none) ------------------------------
Ciona intestinalis HcI  (none) ------------------------------
Ciona intestinalis HcD  (none) MRKNIREETFQAMAQFKNGYTNIVSWHWHS
Ciona intestinalis HcC  (none) MRKNIREETFQAMARFKDGYTNIVSWHWHV
Ciona intestinalis HcB  (none) ------------------------------
Ciona intestinalis HcA  (none) ------------------------------
Aspergillus aculeatus tyr  (none) MRQDLAVQVSRALDKLQLSYFRLAGIHHHN
Agaricus bisporus tyr  (none) MRLNILKFFTRALQVLQSSFFQLGGIHTHG
Ectocarpus siliculosus tyr12  (none) MRREVREDREDAMEKLYKGISFFVQMHWHD
Ectocarpus siliculosus tyr13  (none) MRREIRKDREDAMETLYKGINFFVQMHWHD
Ectocarpus siliculosus tyr16  (none) MRREIRRDRENAVSVLQYSKDYFNRLHWHD
Ectocarpus siliculosus tyr18  (none) MRREIRRDRENAVSIMQYSKDFFNRIHWHA
Ectocarpus siliculosus tyr17  (none) MRREIRRDRENAVAVLQYSKDYFNRMHWHA
Ectocarpus siliculosus tyr14  (none) MRREIRRDRENAVSVLQYSMDYFTRMHWHE
Ectocarpus siliculosus tyr15  (none) MRREIRQDRENAMAVMQYSKDYLTRLHWHQ
Ectocarpus siliculosus tyr7  (none) MRREIRDERDDAMKVLWLDVWTIDQFHLHD
Ectocarpus siliculosus tyr11  (none) MRREIRDEREDAMFALWADIYAINRLHFHD
Ectocarpus siliculosus tyr10  (none) MRREIREDREDAMLELWSDIWAINRLHFHD
Ectocarpus siliculosus tyr8  (none) MRREIRDEREDAMFTIWADIYAINRLHFHD
Ectocarpus siliculosus tyr9  (none) MRREIRDEREDAMFTLWADIYAINRLHFHD
Ectocarpus siliculosus tyr4  (none) MRRELRADREDAMEAYYFDYQLLASYHYHA
Ectocarpus siliculosus tyr3  (none) MRREIRGDREDAMETWYSNYMSIAAIHYHQ
Ectocarpus siliculosus tyr2  (none) MRREIRRDREDAMQTWYSNYMPVTAIHYHQ
Ectocarpus siliculosus tyr1  (none) MRREIRRDREDAMLIWYSNYQVITAYHYHI
Ectocarpus siliculosus tyr6  (none) MRRELREDRTAAMREFYSNAKHVAAYHFHN
Ectocarpus siliculosus tyr5  (none) MRRELRADRTSAMREFYANSKIISTYHFHS
Dictyostelium fasciculatum tyr  (none) MAPQFQQVPQIAPNHVFKWWREDPHWNDRQ
Polysphondylium pallidum tyr2  (none) MSPHFQQVPQIAPSHVFKWWREDPHWNDRQ
Lottia gigantea Hc  (none) MRYSLRKKKNKAWKLVKNSFWSIASYHQHS
Vitis vinifera CO  (none) MRRAAHDYIANAVSIMKRSFLSQANLHVHR
Oryza sativa CO  (none) MRPAAHAYLARAVSLMKRSFEQQWRVHIHS
Glycine max CO12  (none) MRPAAHEYLAKALDLMKRNFTQQANVHIHN
Glycine max CO11  (none) MRPAAHEYLAKALDLMKRNFTQQANVHVHN
Glycine max CO9  (none) MRPAAHNYLAKAIDLMKRNFMQQANVHVHS
Glycine max CO8  (none) MRSAAHDYLAKAVNLMKRSFAQQAKVHVHF
Glycine max CO10  (none) MRPAAHVYIAEALKRMKRNFTQQANVHVHN
Glycine max CO7  (none) MRPPAQEYLELALKRMRRSFKQQADIHVHF
Glycine max CO6  (none) MRPPAQEYLELALKRMRRSFKQQADIHVHF
Glycine max CO2  (none) MRPAAHDYIAEAVRRMQRSFMQQANVHVHG
Glycine max CO1  (none) MRPAAHDYIAEAVRRMQRSFMQQANVHVHG
Glycine max CO5  (none) MRRPAQDYLNEAVRLMRRNFMQQAKIHVHG
Glycine max CO4  (none) MRKPAHEYIAKGIALMKRNFIQQAKVHIHR
Glycine max CO3  (none) MRKPAHEYIAKGIALMKRNFIQQAKVHIHR
Tribolium castaneum tyr2  (none) MRQDTQSFPDEEATVVPAYFREDLHWHNRR
Tribolium castaneum tyr3  (none) MRQDTQSFPDEEATVVPAYFREDLHWHNRR
Tribolium castaneum tyr1  (none) MRPDTQVFPDEEAHIVPAYWREDIHWHNRR
Drosophila melanogaster tyr2  (none) MRPDTQTFPDEESFVVQWYFREDLHWHDRR
Anopheles gambiae tyr1  (none) MRKDTHVFPDEEATVVPWYFREDIHWHDRR
Drosophila melanogaster tyr1  (none) MRPDTKTFPDEESFVVEWYFREDLHWHDRR
Bombyx mori tyr1  (none) MRPDTKSFPDEVSSVVPAYFREDIHWHDRR
Bombyx mori tyr2  (none) MRRDTRVFPSETAAVIPAYWREDIHYHDRR
Drosophila melanogaster tyr3  (none) MRPDTRIFPSQEASVIGAYFREDIHWHDRR
Anopheles gambiae tyr8  (none) MRPDTKLFPDEEGSIVLAFFREDIHWHDRR
Anopheles gambiae tyr7  (none) MRSDTSLFPDEEGRAVLAYFREDIHWHDRR
Anopheles gambiae tyr5  (none) MRDDTRLFPDEESNLLDAYWREDIHWHDRR
Anopheles gambiae tyr4  (none) MRTDTRLFPDEEGTLVDAYWREDIHWHDRR
Anopheles gambiae tyr6  (none) MRPDTKLFPDEEGAVVNAYFREDIHWHDRR
Anopheles gambiae tyr3  (none) MRPDTKLFPDEEGAIVQAYFREDIHWHDRR
Anopheles gambiae tyr2  (none) MREDTKLFPDEEGAAVQAYFREDIHWHDRR
Anopheles gambiae tyr9  (none) MRKDTGMFPTEEGFVVQAYFREDIHWHDRR
Daphnia pulex tyr  (none) MRQDSRIFPGEAQTTVQSYFREDLHWHDRR
Epiperipatus sp Hc  (none) MSPHTTTMPYGIIESTKSYFREDIHWHNRK
Euphrynichus bacillifer HcB  (none) MRDDCKIFPDKEATLKPAYYREDIHWHDRK
Mastigoproctus giganteus HcB  (none) MRDDCKIFPDKEVYRNPAYYREDIHWHDRK
Euphrynichus bacillifer HcA  (none) MRDDCRVFPDKADLKRTAYFREDIHWHDRK
Mastigoproctus giganteus HcA  (none) MRSDCDIFPDKADINRTAYFREDIHWHDRK
Limulus polyphemus HcA  (none) MRDDCKIFPDKDDHHRKAYFREDIHWHDRK
Limulus polyphemus HcB  (none) MRPDCKIFPDKEFWQNPAYYREDIHWHDRK
Aspergillus nidulans tyr2  (none) MSKDAQFFSTCTADTLHSYWRDDYHYYDRH
Aspergillus nidulans tyr1  (none) MSKDAQFFSTCTADTLHSYWRDDYHYYDRH
Amphimedon queenslandica tyr  (none) MSKEAQEFAMEVTPTIPSYWREDYHYHDRQ
Saccoglossus kowaleksii Hc  (none) MHSLARKVPEMSTHAMVDYWRHDAHRHDRQ
Ciona intestinalis tyr1  (none) MSKRAKQYPVISNAAMTNYWRNDAHRHFRQ
Ciona intestinalis tyr4  (none) MSKLCKKHNVTQSAAMTNYWRCDAHNHTRQ
Ciona intestinalis tyr3  (none) MSKLCKKHNVTQSAAMTNYWRCDAHNHTRQ
Ciona intestinalis tyr2  (none) MSKLCKKHNVTQSAAMTNYWRCDAHNHTRQ

Columns

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