@ARTICLE{TreeBASE2Ref17086,
author = {Aom Pinnoi and Rajesh Jeewon and Jariya Sakayaroj and Kevin D Hyde and E. B. G. Jones},
title = {Berkleasmium crunisia sp. nov. and its phylogenetic affinities to the Pleosporales based on 18S and 28S rDNA sequence analyses},
year = {2007},
keywords = {},
doi = {},
url = {},
pmid = {},
journal = {Mycologia},
volume = {},
number = {},
pages = {},
abstract = {Berkleasmium crunisia sp. nov. is described from a decaying rachis of Calamus sp. (Arecaceae) from Khuan Ka Long, Satun Province, Thailand. This Berkleasmium species differs morphologically from other species in possessing subtending cells and larger conidia. The phylogenetic relationship of the genus Berkleasmium among sexual ascomycetes was also examined. Sequence analyses from 18S, 28S and ITS-5.8S rDNA were analysed phylogenetically under maximum parsimony, bayesian and neighbour- joining criteria. Phylogenies revealed that Berkleasmium is not monophyletic. Berkleasmium micronesicum and B. nigroapicale are phylogenetically related to Westerdykella cylindrica and Sporormia australis, which are members of the family Sporormiaceae (Pleosporales). Other species, including our new taxon, appear to share close phylogenetic affinities to other anamorphic fungi, whose classification within the Pleosporales are still obscure. Analyses also indicate that the 18S, 28S, ITS (+5.8S) rDNA and combined data (18S+28S) gene sequences fail to give enough phylogenetic resolution within the Pleosporales.}
}
Matrix 8586 of Study 1740
Citation title:
"Berkleasmium crunisia sp. nov. and its phylogenetic affinities to the Pleosporales based on 18S and 28S rDNA sequence analyses".
This study was previously identified under the legacy study ID S1707
(Status: Published).
Matrices
Title: File 1
Description: 97 genes alignment
Rows
|
Taxon Label |
Row Segments |
Characters 1?–30 |
| Tursiops truncatus |
(none)
|
GAAACAATTAGGAACCCCCAGCAGCAGGAG |
| Balaenoptera acutorostrata |
(none)
|
GAAACAATTAGGAACCCCCAGCAGCAGGAG |
| Hippopotamus amphibius |
(none)
|
GAAACAATTAGGAACCCCCAGCAGCAGGAG |
| Bos taurus |
(none)
|
GAAACAATTAGGAGTCCCCAGCAGCAGGAG |
| Sus scrofa |
(none)
|
GAAACAATTAGGAACCCCCAGCAGCAGGAG |
| Camelus bactrianus |
(none)
|
GAGACAATACGGAACCCCCAGCAGCAGGAG |
| Ceratotherium simum |
(none)
|
GAAACCATTAGAAACCCCCAGCAGCAAGAA |
| Equus caballus |
(none)
|
GAAACCATTAGAAACCCCCAGCAGCAGGAG |
| Canis familiaris |
(none)
|
GAAACAATCAGAAACCCCCAGCAGCAAGAA |
| Manis pentadactyla |
(none)
|
GAAACAATTAGAAGCCCCCAGCAGCAAGAA |
| Myotis lucifugus |
(none)
|
GAAACCATTAGAAACCCTCAGCAGCAGGAA |
| Erinaceus europaeus |
(none)
|
GAAACAATTAGAAACCCTCAGCAGCAAGAA |
| Soricidae sp. |
(none)
|
GAAACAATTAGAAACCCCCAACAGCAAGAA |
| Mus musculus |
(none)
|
GAAACGATCCGAAACCCCCAGCAGGAGGAA |
| Homo sapiens |
(none)
|
GAAACAATTAGAAACCCCCAGCAGCAAGAA |
Columns
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Taxa
Matrices
Trees
Analyses
