@ARTICLE{TreeBASE2Ref15914,
author = {Joseph Hughes and Martyn Kennedy and Kevin P. Johnson and R. L. Palma and Roderic D. M. Page},
title = {Multiple Cophylogenetic Analyses Reveal Frequent Cospeciation between Pelecaniform Birds and Pectinopygus Lice.},
year = {2007},
keywords = {},
doi = {10.1080/10635150701311370},
url = {},
pmid = {},
journal = {Systematic Biology},
volume = {56},
number = {2},
pages = {1--20},
abstract = {Lice in the genus Pectinopygus parasitize a single order of birds (Pelecaniformes). To examine the degree of congruence between the phylogenies of 17 Pectinopygus species and their pelecaniform hosts, sequences from mitochondrial 12S rRNA, 16S rRNA, COI, and nuclear wingless and EF1-a genes (2290 nucleotides) and frommitochondrial 12S rRNA, COI, and ATPases 8 and 6 genes (1755 nucleotides) were obtained for the lice and the birds, respectively. Louse data partitions were analyzed for evidence of incongruence and evidence of long-branch attraction prior to cophylogenetic analyses. Host-parasite coevolution was studied by different methods: TreeFitter, TreeMap, ParaFit, likelihood-ratio test, data-based parsimony method, and correlation of coalescence times. All methods agree that there has been extensive cospeciation in this host-parasite system, but the results are sensitive to the selection of different phylogenetic hypotheses and analytical methods for evaluating cospeciation. Perfect congruence between phylogenies is not found in this association, probably as a result of occasional host switching by the lice. Errors due to phylogenetic reconstruction methods, incorrect or incomplete taxon sampling or to different loci undergoing different evolutionary histories cannot be rejected, thus emphasising the need for improved cophylogenetic methodologies.}
}
Matrix 1855 of Study 1788
Citation title:
"Multiple Cophylogenetic Analyses Reveal Frequent Cospeciation between Pelecaniform Birds and Pectinopygus Lice.".
This study was previously identified under the legacy study ID S1760
(Status: Published).
Matrices
Title: Pelecaniformes
Description: Legacy TreeBASE Matrix ID = M3209
Rows
|
Taxon Label |
Row Segments |
Characters 1?–30 |
| Gavia stellata |
(none)
|
TTTATCATGCTAACATCATGACTCACCTTC |
| Phalacrocorax pygmaeus |
(none)
|
?????????????????????????????? |
| Phalacrocorax auritus |
(none)
|
TTCATCCTACTAGCCTCATGACTAACATTT |
| Phalacrocorax aristotelis |
(none)
|
TTTATCATACTGATCTCATGACTAACATTT |
| Phalacrocorax punctatus |
(none)
|
TTCATCCTACTAACCTCATGACTAACATTC |
| Phalacrocorax varius |
(none)
|
TTCATCCTACTAACCTCATGACTAACATTT |
| Phalacrocorax sulcirostris |
(none)
|
TTCATCCTACTA?CCTCATGACTAACATTT |
| Phalacrocorax carbo |
(none)
|
TTTATCCTACTAACCTCATGACTAACATTC |
| Anhinga novaehollandiae |
(none)
|
?????????????????????????????? |
| Sula sula |
(none)
|
?TCATCCTAACCCTATCATGACTAAC{AC} |
| Sula dactylatra |
(none)
|
CTTATCCTAACTTTATCATGACTTACCCTC |
| Sula leucogaster |
(none)
|
??????????????ATCATGACTTA?ATTC |
| Sula nebouxii |
(none)
|
CTTATCCTAGCTTTATCATGACTTACCCTC |
| Morus bassanus |
(none)
|
??CATCTTATTAATATCATGATTAACATTC |
| Morus serrator |
(none)
|
CTCATCTTATTAATATCATGACTAACATTC |
| Pelecanus erythrorhynchos |
(none)
|
CTCACCATAATAGCATCATGACTAATCTTC |
| Pelecanus occidentalis |
(none)
|
?????CATACTAA?ATCATGACTGATCTTC |
| Fregata magnificens |
(none)
|
TTCACCCTATTAATAACATGACTCGCTTTC |
| Fregata minor |
(none)
|
TTCACCCTATTAATAACATGACTCGCTTTC |
Columns
None of the columns has a description.
Go to search
Citation
Taxa
Matrices
Trees
Analyses
