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Matrix 46749 of Study 1834
Citation title: "Taxonomic rearrangement of the genus Schizochytrium sensu lato based on morphology, chemotaxonomic characteristics, and 18S rRNA gene phylogeny (Thraustochytriaceae, Labyrinthulomycetes): emendation for Schizochytrium and erection of Aurantiochytrium and Oblongichytrium gen. nov.".
This study was previously identified under the legacy study ID S1809
(Status: Published).
Matrices
Title: Isopentenyltransferase genes Plant Pfam IPTdomain
Description: Assessing plant gene assigned in Pfam IPT domain
Rows
| Taxon Label | Row Segments | Characters 1?–30 |
|---|---|---|
| Rhodococcus fascians 1.IPT_RHOFA | (none) | -GVYAIVGATGIGKSAEASKLALSHSAPIV |
| Solanum tuberosum 10.StM1DKB5 | (none) | -KVVFIMGATGTEKSRLSVDLATHFRGEII |
| Solanum tuberosum 11.StM1DKI2a | (none) | -KVVFIMGATGTGKSRLSVDLATNFRVEII |
| Solanum tuberosum 12.StM1DKI2b | (none) | -KVVFILGARGTGKSRHSVDLATHFRGEII |
| Solanum tuberosum 13.StM1DZ85 | (none) | ------MGATGTGKSRLSVYLATHFRGEII |
| Solanum lycopersicum 14.SlK4CKW0 | (none) | -KVIFIMGATGTGKSRISVNLATHFRGEII |
| Solanum lycopersicum 15.SlK4CKW5 | (none) | -KVIFIMGATRTGKSRLSIDLATQFRGEII |
| Solanum lycopersicum 16.SlK4D6T8 | (none) | ------MGATGTGKSRLFVDIATHFRGEII |
| Solanum lycopersicum 17.SlK4D6T9 | (none) | -KVIFIMGATGTGKSRLSVDIATHFRGEII |
| Solanum lycopersicum 18.SlK4D6Y8 | (none) | -KVILIMGATGTGKSHLSVDLATHFRREII |
| Solanum lycopersicum 19.SlK4D6Z0 | (none) | -KVIFIIGAIGTGKSCLSVDVATHFGGEII |
| Pantoea agglomerans 2.IPT_PANAY | (none) | -NVYLLWGATTTGKTAFSVSVAKERGWSVI |
| Solanum lycopersicum 20.SlK4D6Z2 | (none) | ------MVATGTGKSRLSVDVATHFGGEII |
| Solanum lycopersicum 21.SlK4D6Z5 | (none) | ------MGATGTGKSGLSVDVATHFGGEII |
| Solanum lycopersicum 22.SlK4D7J2 | (none) | ------MGATGTEKSHLSVDLATHFKGEII |
| Solanum lycopersicum 23.SlK4D8Z1 | (none) | -KVIFIVEATGTGKSRLSVDLPTYFGGEII |
| Solanum lycopersicum 24.SlK4D8Z4 | (none) | -KVIFIMGATGTGKSRLSVDLATHFRGEII |
| Solanum lycopersicum 25.SlK4D8Z5 | (none) | -KVIFIMGATGAGKSCFSVDLATHFRGEII |
| Solanum lycopersicum 26.SlK4D8Z7 | (none) | -KVIFVMGATGTGKSRLSVDLATHFRGEII |
| Solanum lycopersicum 27.SlK4D8Z8 | (none) | -KVIFIMGATGTGKSRLSVDLATHFRGEII |
| Solanum lycopersicum 28.SlK4D8Z9 | (none) | -KVIFIMGATGTGKSHLSVDLATHFRGEII |
| Solanum lycopersicum 29.SlK4D902 | (none) | -KVIFIIGATGTGESRLSVDLATHFRGEII |
| Agrobacterium tumefaciens Fabrum 3.IPTZ_AGRT5 | (none) | MLLHLIYGPTCSGKTDMAIQIAQETGWPVV |
| Solanum lycopersicum 30.SlK4D903 | (none) | -KVIFIMGATGTGKSRLSVDLATHFRGEII |
| Solanum lycopersicum 31.SlK4D957 | (none) | -KVIFIMGATGTGKSRLSVDLATHFRGEII |
| Solanum lycopersicum 32.SlK4D958 | (none) | -EVIFIIGAVGTGKSCFSVDLATHFRGKII |
| Solanum lycopersicum 33.SlK4D983 | (none) | -KVIFIMGATGTGKSRLSIDVATHFRGEII |
| Solanum lycopersicum 34.SlK4D985 | (none) | ------MGATGTGKSHLSVNLATHFQGEII |
| Solanum lycopersicum 35.SlK4D986 | (none) | -KFIVIMGATGTGKSRLSVDLASHFRGEII |
| Physcomitrella patens 36.PpA9SC20 | (none) | --VIVIAGPTGVGKSRFAINLAKQLGGEII |
| Oryza brachyantha 37.ObrJ3L312 | (none) | --MVVIVGATGTGKTKLSIDAAQELGGEVV |
| Oryza brachyantha 38.ObrJ3LNW5 | (none) | PKVVFVLGATATGKSKLAIFIAKRFGGEVI |
| Oryza barthii 39.ObaA0A0D3FQI1 | (none) | ---VVVMGATGTGKSRLAVDLALRFGGEVI |
| Agrobacterium tumefaciens 4.IPTZ_AGRT7 | (none) | MILHLIYGPTCSGKTDMAIQIAQETGWPVV |
| Musa acuminata 40.GSMUA_AchrUn_randomT01160_001_IPT | (none) | --VVFVMGATGTGKSRLAVDVAIHFGGEIV |
| Anabaena variabilis 41.AvIPT2 | (none) | TKLIVICGATATGKSGLALNLAMRLGSVIL |
| Nostoc sp. PCC7120 42.NoIPT2 | (none) | TKLIVICGATATGKSGLALNLAMRLGSVIL |
| Agrobacterium tumefaciens 43.MIAA_RHIRD | (none) | FDAILITGPTASGKSALALRLARERNGVVI |
| Agrobacterium vitis 44.MIAA_AGRVS | (none) | FDAILITGPTASGKSALALRLAAEVGGVVI |
| Pantoea agglomerans 45.MIAA_PANAY | (none) | PKAIFLMGPTASGKTALAIELRKQLPVELI |
| Rhodococcus fascians 46.MIAA_RHOFA | (none) | LRPIAVIGPTATGKSDLGLDLAETLGGEVV |
| Physcomitrella patens 47.PpIPT1 | (none) | GRVVIIAGPTGVGKSRLALALAKRLRGEII |
| Physcomitrella patens 48.PpIPT2_1 | (none) | PRVILIAGPTAVGKTRLSIELAKTLGGEVI |
| Physcomitrella patens 49.PpIPT2_2 | (none) | ------------------------------ |
| Agrobacterium vitis 5.IPT1_AGRVS | (none) | MEAHLIFGPTSTGKTSVAIALAKRTGFPVI |
| Physcomitrella patens 50.PpIPT2_3 | (none) | ------------------------------ |
| Physcomitrella patens 51.PpIPT3 | (none) | GRVVIIAGPTAVGKSRVAIDLAKQLGGEII |
| Physcomitrella patens 52.PpIPT4 | (none) | ------------------------------ |
| Physcomitrella patens 53.PpIPT5 | (none) | GRVVVIAGPTAVGKSRIAIALAKQLGGEII |
| Physcomitrella patens 54.PpIPT6 | (none) | GRVVVIAGPTAVGKSRVAIALAKQLRGEII |
| Oryza sativa 55.OsIPT10 | (none) | NKVIVISGPTGAGKTRLALDLAKRLSGEII |
| Musa acuminata 56.MuatIPT_I | (none) | ------------------------------ |
| Arabidopsis thaliana 57.AtIPT9 | (none) | EKVIVISGPTGAGKSRLAMELAKRLNGEII |
| Solanum lycopersicum 58.SlIPT6 | (none) | EKVIVISGPTGAGKSKLALELAKRINGEII |
| Solanum tuberosum 59.SttIPT_I | (none) | EKVIVISGPTGAGKSKLALELAKRLNGEII |
| Agrobacterium tumefaciens 6.IPT_RHIRD | (none) | MDLRLIFGPTCTGKTSTAIALAQQTGLPVL |
| Musa acuminata 60.MuatIPT_II | (none) | ------MGATGAGKSRVAIDLASHFSGEVV |
| Oryza sativa 61.OsIPT9 | (none) | RKVVVVMGATGAGKSRLAVDLASHFAGEVV |
| Arabidopsis thaliana 62.AtIPT2 | (none) | AKVVVIMGPTGSGKSKLAVDLASHFPVEII |
| Solanum lycopersicum 63.SlIPT5 | (none) | PKVVVIMGATGSGKSKLAIDLASHFPIEII |
| Solanum tuberosum 64.SttIPT_II | (none) | PKVVVIMGATGSGKSKLAIDLASHFPIEII |
| Musa acuminata 65.MuaaIPT_d | (none) | ------MGATGTGKSKLSIDLATEFSGEVV |
| Musa acuminata 66.MuaaIPT_a | (none) | ------MGATGTGKSKLSVDLSVMFSGEVV |
| Musa acuminata 67.MuaaIPT_b | (none) | ------MGATGTGKSKLSIDLSAMFSGEVV |
| Musa acuminata 68.MuaaIPT_c | (none) | ------MGATGTGKSKLSVELATVFDGEVV |
| Musa acuminata 69.MuaaIPT_e | (none) | ------MGATGTGKSKLSIELATRFSGEVV |
| Anabaena variabilis 7.AvIPT1 | (none) | MRLHIILGPTSTGKTDRSVVLAKQTKAPVI |
| Oryza sativa 70.OsIPT6 | (none) | NKLVVIIGATGTGKTRLSIEIAKAIGGEVV |
| Oryza sativa 71.OsIPT8 | (none) | TGMVVIVGATGTGKTKLSIDAAQELAGEVV |
| Oryza sativa 72.OsIPT7 | (none) | TRMVVIVGATGTGKTKLSIDAAKVIGGEVV |
| Arabidopsis thaliana 73.AtIPT6 | (none) | DKVVLITGTTGTGKSRLSVDLATRFFPEII |
| Arabidopsis thaliana 74.AtIPT1 | (none) | DKVVVILGATGAGKSRLSVDLATRF-PEII |
| Arabidopsis thaliana 75.AtIPT4 | (none) | DKMVVIMGATGSGKSSLSVDLALHFKAEII |
| Arabidopsis thaliana 76.AtIPT8 | (none) | QKVVVIMGATGSGKSCLSIDLATRFSGEIV |
| Solanum lycopersicum 77.SlIPT2 | (none) | KKIVVIMGATGCGKSKLSIELATHFFPEVI |
| Solanum tuberosum 78.StaIPT_a | (none) | ------MGATGCGKSKLSIDLATHFFPEVI |
| Solanum lycopersicum 79.SlIPT1 | (none) | KKIVVIMGATGSGKSKLSIDLATRGFNEII |
| Nostoc sp. PCC7120 8.NoIPT1 | (none) | MRLHIILGPTSVGKTDRSVVLAKQTKAPVI |
| Solanum tuberosum 80.StaIPT_b | (none) | ------MGATGSGKSKLSIDLATRFFPEII |
| Solanum lycopersicum 81.SlIPT4 | (none) | DKVVVVMGVTGAGKSKLSIDLATQFDGEII |
| Solanum tuberosum 82.StaIPT_c | (none) | DKIVVVMGVTGAGKSKLSIDLATQFNGEII |
| Arabidopsis thaliana 83.AtIPT3 | (none) | DKVVVIMGATGTGKSRLSVDIATRFRAEII |
| Oryza sativa 84.OsIPT4 | (none) | HKAVVVMGATGTGKSRLAVDLALRFGGEVI |
| Oryza sativa 85.OsIPT5 | (none) | HKAVVVMGATGTGKTRLAVDLALQFGGEVI |
| Oryza sativa 86.OsIPT3 | (none) | GKVVVVMGATATGKSKLAIDLALRFGGEVI |
| Musa acuminata 87.MuaaIPT_f | (none) | -------------KSKLAIALAKSFRG--- |
| Oryza sativa 88.OsIPT1 | (none) | PKVIFVLGATATGKSKLAIRLAARFDGEVI |
| Oryza sativa 89.OsIPT2 | (none) | PKVVFVLGATATGKSKLAISIAERFGGEVI |
| Solanum tuberosum 9.StM1ANG4 | (none) | -EVVFIMGATGTGKSRLSVDHAIHFRGEII |
| Solanum lycopersicum 90.SlIPT3 | (none) | DKVVIVMGATGTGKSRLSIDLAKQFSAEVV |
| Arabidopsis thaliana 91.AtIPT5 | (none) | DKVVFVMGATGTGKSRLAIDLATRFPAEIV |
| Arabidopsis thaliana 92.AtIPT7 | (none) | EKVIFVMGATGSGKSRLAIDLATRFQGEII |
Columns
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