@ARTICLE{TreeBASE2Ref16380,
author = {Jessica E Light and Mark S. Hafner},
title = {Cophylogeny and disparate rates of evolution in sympatric lineages of chewing lice on pocket gophers},
year = {2007},
keywords = {},
doi = {},
url = {},
pmid = {},
journal = {Molecular Phylogenetics and Evolution},
volume = {},
number = {},
pages = {},
abstract = {Although molecular-based phylogenetic studies of hosts and parasites are increasingly common in the literature, no study to date has examined 2 congeneric lineages of parasites that live in sympatry on the same lineage of hosts. This study examines phylogenetic relationships among chewing lice (Phthiraptera: Trichodectidae) of the Geomydoecus coronadoi and G. mexicanus species complexes and compares these to phylogenetic patterns in their hosts (pocket gophers of the rodent family Geomyidae). Sympatry of congeneric lice provides a natural experiment to test the hypothesis that closely related lineages of parasites will respond similarly to the same host. Sequence data from the mitochondrial COI and the nuclear EF-1a genes confirm that the 2 louse complexes are reciprocally monophyletic and that individual clades within each species complex parasitize a different species of pocket gopher. Phylogenetic comparisons reveal that both louse complexes show a significant pattern of cophylogeny with their hosts. Comparisons of rates of nucleotide substitution at 4-fold degenerate sites in the COI gene indicate that both groups of lice have significantly higher basal mutation rates than their hosts. The 2 groups of lice have similar basal rates of mutation, but lice of the G. coronadoi complex show significantly elevated rates of nucleotide substitution at all sites. These rate differences are hypothesized to result from population-level phenomena, such as effective population size, founder effects, and drift, that influence rates of nucleotide substitution.}
}
Matrix 3935 of Study 1910

Citation title:
"Cophylogeny and disparate rates of evolution in sympatric lineages of chewing lice on pocket gophers".

This study was previously identified under the legacy study ID S1887
(Status: Published).
Matrices
Title: EF1a DNA
Description: Legacy TreeBASE Matrix ID = M3467
Rows
Taxon Label |
Row Segments |
Characters 1?–30 |
Geomydoecus veracruzensis LSUMZ36069 |
(none)
|
TGAAGAACGTGTCCGTTAAAGAATTGCGCA |
Geomydoecus veracruzensis CNMA41823 |
(none)
|
TGAAGAACGTGTCCGTTAAAGAATTGCGCA |
Geomydoecus traubi LSUMZ36065 |
(none)
|
TGAAGAACGTGTCCGTTAAAGAATTGCGCA |
Geomydoecus traubi CNMA41826 |
(none)
|
TGAAGAACGTGTCCGTTAAAGAATTGCGCA |
Geomydoecus traubi LSUMZ36125 |
(none)
|
TGAAGAACGTGTCCGTTAAAGAATTGCGCA |
Geomydoecus perotensis LSUMZ34903 |
(none)
|
TGAAGAACGTGTCCGTTAAAGAATTGCGCA |
Geomydoecus perotensis LSUMZ34344 |
(none)
|
TGAAGAACGTGTCCGTTAAAGAATTGCGCA |
Geomydoecus perotensis CNMA41905 |
(none)
|
TGAAGAACGTGTCCGTTAAAGAATTGCGCA |
Geomydoecus mexicanus |
(none)
|
TGAAGAACGTGTCCGTTAAAGAATTGCGCA |
Geomydoecus fulvescens |
(none)
|
TGAAGAACGTGTCCGTTAAAGAATTGCGCA |
Geomydoecus craigi |
(none)
|
TGAAAAACGTGTCCGTTAAAGAATTGCGCA |
Geomydoecus coronadoi LSUMZ36293 |
(none)
|
TGAAGAACGTGTCCGTTAAAGAATTGCGCA |
Geomydoecus coronadoi LSUMZ36125 |
(none)
|
TGAAGAACGTGTCCGTTAAAGAATTGCGCA |
Geomydoecus coronadoi LSUMZ34903 |
(none)
|
TGAAGAACGTGTCCGTTAAAGAATTGCGCA |
Geomydoecus coronadoi LSUMZ34344b |
(none)
|
TGAAGAACGTGTCCGTTAAAGAATTGCGCA |
Geomydoecus coronadoi LSUMZ34344 |
(none)
|
TGAAGAACGTGTCCGTTAAAGAATTGCGCA |
Geomydoecus coronadoi CNMA41904 |
(none)
|
TGAAGAACGTGTCCGTTAAAGAATTGCGCA |
Columns
None of the columns has a description.