@ARTICLE{TreeBASE2Ref17776,
author = {Eiji Tanaka and Chihiro Tanaka},
title = {Phylogenetic study of clavicipitaceous fungi using acetaldehyde dehydrogenase gene sequences},
year = {2007},
keywords = {},
doi = {},
url = {},
pmid = {},
journal = {Mycoscience},
volume = {},
number = {},
pages = {},
abstract = {Aciculosporium and HeteroepichloeN (Clavicipitaceae) are characteristic bambusicolous fungi in east Asia. In this study, we examined their intergeneric relationships based on the ALDH1-1 gene, which encodes a member of the aldehyde dehydrogenase family. In the clavicipitaceous fungi examined in this study, the nucleotide sequence of the third exon of ALDH1-1 (Exon-3) is 889 bp in length and has no insertion/deletion. A phylogenetic tree based on Exon-3 indicated that the clavicipitaceous fungi could be divided into two large groups: Cordyceps, Nomuraea, and Ustilaginoidea species formed a paraphyletic group, while the other grass biotrophic species formed a monophyletic group. This monophyletic group was further divided into three groups with high bootstrap support: i.e., species with Neotyphodium anamorphs (e.g. EpichloeN), species with Ephelis anamorphs (e.g. HeteroepichloeN), and Aciculosporium|Claviceps species. We discuss the relationships among Aciculosporium, HeteroepichloeN, and other clavicipitaceous fungi.}
}
Matrix 2927 of Study 1925
Citation title:
"Phylogenetic study of clavicipitaceous fungi using acetaldehyde dehydrogenase gene sequences".
This study was previously identified under the legacy study ID S1904
(Status: Published).
Matrices
Title: ALDH1-1 Exon-3
Description: Legacy TreeBASE Matrix ID = M3498
Rows
Taxon Label |
Row Segments |
Characters 1?–30 |
Gibberella zeae 2 |
(none)
|
ATCGGTGTCTGCGGTCAGATTATCCCCTGG |
Heteroepichloe bambusae |
(none)
|
ATTGGCGTCTGCGGTCAAATAATCCCGTGG |
Heteroepichloe sasae |
(none)
|
ATTGGCGTTTGCGGTCAAATCATCCCGTGG |
Parepichloe cinerea |
(none)
|
ATTGGTGTTTGCGGTCAAATCATCCCGTGG |
Ephelis japonica4 |
(none)
|
ATTGGTGTTTGCGGTCAGATTATCCCGTGG |
Ephelis japonica1 |
(none)
|
ATTGGTGTTTGCGGTCAGATTATCCCGTGG |
Neotyphodium |
(none)
|
ATTGGTGTTTGCGGTCAGATCATCCCCTGG |
Epichloe typhina |
(none)
|
ATTGGTGTTTGCGGTCAGATCATCCCCTGG |
Neurospora crassa1 |
(none)
|
CTCGGTGTTTGCGGTCAGATCATCCCCTGG |
Nomuraea atypicola |
(none)
|
ATTGGTGTCTGTGGTCAGATTATTCCCTGG |
Cordyceps militaris2 |
(none)
|
ATTGGTGTCTGCGGTCAGATCATTCCCTGG |
Cordyceps militaris1 |
(none)
|
ATTGGTGTCTGCGGTCAGATCATTCCCTGG |
Cordyceps heteropoda |
(none)
|
GTGGGCGTCTGCGGTCAAATCATCCCCTGG |
Cordyceps paradoxa |
(none)
|
ATTGGTGTCTGCGGCCAGATCATTCCCTGG |
Cordyceps ophioglossoides |
(none)
|
CTCGGTGTCTGCGGTCAGATCATTCCCTGG |
Ustilaginoidea virens Japan |
(none)
|
ATTGGTGTTTGCGGCCAAATCATTCCCTGG |
Ustilaginoidea virens China |
(none)
|
CTTGGTGTTTGCGGCCAAATCATTCCCTGG |
Aciculodporium take 2 |
(none)
|
CTTGGTGTCTGCGGTCAAATCATACCCTGG |
Aciculodporium take 1 |
(none)
|
CTTGGTGTCTGCGGTCAAATCATACCCTGG |
Claviceps purpurea Japan |
(none)
|
CTTGGTGTCTGCGGCCAAATTATTCCCTGG |
Claviceps purpurea China |
(none)
|
CTTGGTGTCTGCGGCCAAATCATTCCCTGG |
Columns
None of the columns has a description.