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Citation
Taxa
Matrices
Trees
Analyses
Matrix 2977 of Study 1947
Citation title: "Reticulate evolution in the parasitic genus Cuscuta (Convolvulaceae): over and over and over again".
This study was previously identified under the legacy study ID S1929
(Status: Published).
Matrices
Title: trnLF
Description: Legacy TreeBASE Matrix ID = M3554
Rows
| Taxon Label | Row Segments | Characters 1?–30 |
|---|---|---|
| Cuscuta yucatana | (none) | ----------------------CTTAATTG |
| Cuscuta xanthochortos carinata | (none) | --------------------GACTTAATTG |
| Cuscuta woodsonii 978 | (none) | ------------------------------ |
| Cuscuta woodsonii 729 916 | (none) | -------------------GGACTTAATTG |
| Cuscuta werdermanii | (none) | ------------------------------ |
| Cuscuta warneri | (none) | --------------------GACTTAATTG |
| Cuscuta victoriana 684 685 | (none) | ------------------------------ |
| Cuscuta victoriana 678 683 | (none) | ------------------------------ |
| Cuscuta veatchii 760 | (none) | ------------------CGGACTTAATTG |
| Cuscuta veatchii 580 | (none) | ------------------CGGACTTAATTG |
| Cuscuta veatchii 521 | (none) | ------------------CGGACTTAATTG |
| Cuscuta umbrosa | (none) | ------------------CGGACTTAATTG |
| Cuscuta umbellata reflexa 577 | (none) | ------------------CGGACTTAATTG |
| Cuscuta umbellata reflexa 1033 | (none) | ------------------CGGACTTAATTG |
| Cuscuta umbellata reflexa 1030 | (none) | ------------------CGGACTTAATTG |
| Cuscuta umbellata reflexa 1027 | (none) | ------------------CGGACTTAATTG |
| Cuscuta umbellata reflexa 1015 | (none) | ------------------CGGACTTAATTG |
| Cuscuta umbellata 759 | (none) | ------------------------------ |
| Cuscuta umbellata 576 | (none) | ----------------TACGGACTTAATTG |
| Cuscuta umbellata 557 | (none) | ----------TGACGCTACGGACTTAATTG |
| Cuscuta umbellata 526 | (none) | ----------------TACGGACTTAATTG |
| Cuscuta umbellata 516 | (none) | -----------GACGCTACGGACTTAATTG |
| Cuscuta tuberculata 764 | (none) | ----------------TACGGACTTAATTG |
| Cuscuta tuberculata 763 | (none) | ----------------TACGGACTTAATTG |
| Cuscuta tuberculata 762 | (none) | ------------------------------ |
| Cuscuta tuberculata 737 | (none) | ----------------TACGGACTTAATTG |
| Cuscuta tuberculata 554 | (none) | ----------------TACGGACTTAATTG |
| Cuscuta tinctoria 574 766 | (none) | ------------------CGGACTTAATTG |
| Cuscuta tinctoria 573 | (none) | ------------------CGGACTTAATTG |
| Cuscuta tasmanica | (none) | ------------------------------ |
| Cuscuta suksdorfii 635 636 | (none) | ----------------------CTTAATTG |
| Cuscuta suksdorfii 470 | (none) | ------------------------------ |
| Cuscuta subinclusa 644 | (none) | ------------------------------ |
| Cuscuta subinclusa 501 | (none) | -----------GACGCTACGGACTTAATTG |
| Cuscuta subinclusa 197 | (none) | ------------ACGCTACGGACTTAATTG |
| Cuscuta suaveolens 996 | (none) | ------------------------------ |
| Cuscuta suaveolens 791 | (none) | ----------------------CTTAATTG |
| Cuscuta suaveolens 790 | (none) | ------------------------------ |
| Cuscuta strobilacea | (none) | -----------------------TTAATTT |
| Cuscuta stenolepis 781 | (none) | ---------------------ACTTAATTG |
| Cuscuta stenolepis 779 | (none) | ---------------------ACTTAATTG |
| Cuscuta squamata | (none) | ------------------------------ |
| Cuscuta sidarum 519 692 751 | (none) | ----------------TACGGACTTAATTG |
| Cuscuta sidarum 1005 | (none) | ------------------------------ |
| Cuscuta serruloba | (none) | ----------TGACGCTACGGACTTAATTG |
| Cuscuta sandwichiana 748 | (none) | -----------GACGCTACGGACTTAATTA |
| Cuscuta sandwichiana 686 | (none) | -----------GACGCTACGGACTTAATTG |
| Cuscuta sandwichiana 155 | (none) | CGAAATTGGTAGACGCTACGGACTTAATTG |
| Cuscuta salina salina 652 653 | (none) | ------------------------------ |
| Cuscuta salina salina 477 478 641 | (none) | --------------------GACTTAATTG |
| Cuscuta salina major | (none) | -------------------GGACTTAATTG |
| Cuscuta runyonii | (none) | ------------------------TAATTG |
| Cuscuta rugosiceps 745 | (none) | ------------------------------ |
| Cuscuta rugosiceps 517 915 | (none) | ----------------------CTTAATTG |
| Cuscuta rostrata | (none) | --------------------GACTTAATTG |
| Cuscuta racemosa miniata | (none) | -----------------------TTAATTG |
| Cuscuta racemosa | (none) | ----------------TACGGACTTAATTG |
| Cuscuta purpusii 928 | (none) | ----------------TACGGACTTAATTG |
| Cuscuta purpusii 898 1013 1025 | (none) | ------------------------------ |
| Cuscuta prismatica | (none) | -------------------GGACTTAATTG |
| Cuscuta potosina globifera | (none) | ----------------------CTTAATTG |
| Cuscuta potosina 845 | (none) | ----------------------CTTAATTG |
| Cuscuta potosina 592 | (none) | ----------------TACGGACTTAATTG |
| Cuscuta polygonorum | (none) | ----------------------CTTAATTG |
| Cuscuta polyanthemos | (none) | ------------------------------ |
| Cuscuta platyloba | (none) | ------------------CGGACTTAATTG |
| Cuscuta plattensis | (none) | ----------------TACGGACTTAATTG |
| Cuscuta pentagona 667 | (none) | ------------------------------ |
| Cuscuta pentagona 468 | (none) | ---------------------ACTTAATTG |
| Cuscuta pentagona 464 | (none) | ----------------------CTTAATTG |
| Cuscuta pentagona 456 | (none) | -------------------GGACTTAATTG |
| Cuscuta parviflora elongata | (none) | ------------------------------ |
| Cuscuta partita | (none) | ------------------------------ |
| Cuscuta odontolepis 730 | (none) | ------------ACGCTACGGACTTAATTG |
| Cuscuta odontolepis 587 | (none) | ------------ACGCTACGGACTTAATTG |
| Cuscuta occidentalis californica | (none) | ----------------------CTTAATTG |
| Cuscuta occidentalis 504 647 648 | (none) | -----------------------TTAATTG |
| Cuscuta occidentalis 503 | (none) | ------------------------------ |
| Cuscuta obtusiflora glandulosa | (none) | ------------------------------ |
| Cuscuta obtusiflora | (none) | -------------------GGACTTAATTG |
| Cuscuta nevadensis 585 | (none) | ------------------CGGACTTAATTG |
| Cuscuta nevadensis 476 | (none) | ----------TGACGCTACGGACTTAATTG |
| Cuscuta mitriformis 584 | (none) | ------------------CGGACTTAATTG |
| Cuscuta mitriformis 556 | (none) | ----------------TACGGACTTAATTG |
| Cuscuta micrantha 988 | (none) | ------------------------------ |
| Cuscuta micrantha 709 | (none) | ------------------------------ |
| Cuscuta micrantha 708 | (none) | ------------------------------ |
| Cuscuta mcvaughii | (none) | ------------------------------ |
| Cuscuta macrocephala 614 731 | (none) | ---------------------ACTTAATTG |
| Cuscuta macrocephala 613 | (none) | ------------------------------ |
| Cuscuta longiloba | (none) | ------------------------------ |
| Cuscuta lindsayi | (none) | ------------------------------ |
| Cuscuta liliputana 848 | (none) | ------------------------------ |
| Cuscuta liliputana 665 | (none) | ------------------------------ |
| Cuscuta liliputana 664 | (none) | ------------------------------ |
| Cuscuta leptantha 884 | (none) | -----------GACGCTACGGACTTAATTG |
| Cuscuta leptantha 719 | (none) | -----------GACGCTACGGACTTAATTG |
| Cuscuta leptantha 608 | (none) | -----------GACGCTACGGACTTAATTG |
| Cuscuta jalapensis 607 | (none) | ---------------------ACTTAATTG |
| Cuscuta jalapensis 606 | (none) | ---------------------ACTTAATTG |
| Cuscuta jalapensis 518 617 | (none) | -----------GACGCTACGGACTTAATTG |
| Cuscuta indecora neuropeltata | (none) | ------------------------------ |
| Cuscuta indecora longisepala | (none) | -----------------------------G |
| Cuscuta indecora attenuata 723 | (none) | ------------------------------ |
| Cuscuta indecora attenuata 721 724 | (none) | ----------------------CTTAATTG |
| Cuscuta indecora 561 720 728 | (none) | ---------------------ACTTAATTG |
| Cuscuta indecora 525 | (none) | --------------------GACTAAATTG |
| Cuscuta incurvata | (none) | ------ACTTGACGGCTACGGACTTAATTG |
| Cuscuta hyalina 994 | (none) | ------------------------------ |
| Cuscuta hyalina 889 | (none) | ------------------------------ |
| Cuscuta hyalina 875 | (none) | ------------------------------ |
| Cuscuta howelliana 654 656 | (none) | --------------------GACTTAATTG |
| Cuscuta howelliana 357 655 | (none) | -----------------------TTAATTG |
| Cuscuta haughtii | (none) | -----------GACGCTACGGACTTAATTG |
| Cuscuta harperi | (none) | -----------GACGCTACGGACTTAATTG |
| Cuscuta gymnocarpa | (none) | ------------------------------ |
| Cuscuta gronovii latiflora 704 | (none) | ------------------------------ |
| Cuscuta gronovii latiflora 703 | (none) | -------------------AGACTTAATTG |
| Cuscuta gronovii calyptrata | (none) | ------------------------TAATTG |
| Cuscuta gronovii 702 | (none) | ------------------------------ |
| Cuscuta gronovii 343 | (none) | ------------ACGCTACGGACTTAATTG |
| Cuscuta gronovii 194 453 467 705 | (none) | -----------GACGGTACGGACTTAATTG |
| Cuscuta gracillima 621 | (none) | --------------GCTACGGACTTAATTG |
| Cuscuta gracillima 599 600 620 | (none) | ----------TGACGCTACGGACTTAATTG |
| Cuscuta glomerata 597 598 | (none) | -------------CGCTACGGACTTAATTG |
| Cuscuta glomerata 462 619 | (none) | -----------GACGCTACGGACTTAATTG |
| Cuscuta globulosa | (none) | ----------------------------TG |
| Cuscuta glabrior 825 | (none) | ----------TGACGCTACGGACTTAATTG |
| Cuscuta glabrior 742 | (none) | ----------TGACGCTACGGACTTAATTG |
| Cuscuta glabrior 596 | (none) | ----------TGACGCTACGGACTTAATTG |
| Cuscuta desmouliniana 571 | (none) | ----------------TACGGACTTAATTG |
| Cuscuta desmouliniana 1161 | (none) | ----------------TACGGACTTAATTG |
| Cuscuta denticulata 668 | (none) | -----------------------TTAATTG |
| Cuscuta denticulata 485 | (none) | --------------------GACTTAATTG |
| Cuscuta denticulata 165 | (none) | --------------------GACTTAATTG |
| Cuscuta decipiens 981 1014 | (none) | -----------GACGCTACGGACTTAATTG |
| Cuscuta decipiens 458 | (none) | ------------------------------ |
| Cuscuta cuspidata | (none) | ------------------------------ |
| Cuscuta cozumeliensis | (none) | ----------------TACGGACTTAATTG |
| Cuscuta costaricensis | (none) | ---------------------------TTT |
| Cuscuta corymbosa stylosa | (none) | ------------------------------ |
| Cuscuta corymbosa grandiflora 959 | (none) | ----------------TACGGACTTAATTG |
| Cuscuta corymbosa grandiflora 695 696 | (none) | ------------------------TAATTG |
| Cuscuta coryli | (none) | --------------------GACTTAATTG |
| Cuscuta corniculata | (none) | -----------------------TTAATTG |
| Cuscuta compacta | (none) | CGAAATCGGTAGACGCTACGGACTTAATTG |
| Cuscuta colombiana | (none) | ----------TGACGCTACGGACTTAATTG |
| Cuscuta chinensis 837 | (none) | ------------------------------ |
| Cuscuta chinensis 459 | (none) | -----------------------TTAATTG |
| Cuscuta chapalana | (none) | ----------------TACGGACTTAATTT |
| Cuscuta cf. cozumeliensis | (none) | -----------GACGCTACGGACTTAATTG |
| Cuscuta cephalanthi | (none) | ----------TGACGCTACGGACTTAATTG |
| Cuscuta campestris 894 | (none) | ------------------------------ |
| Cuscuta campestris 487 | (none) | --------------------GACTTAATTG |
| Cuscuta campestris 483 | (none) | -------------------GGACTTAATTG |
| Cuscuta campestris 411 | (none) | -GAAATCGGTAGACGCTACGGACTTAATTA |
| Cuscuta campestris 202 | (none) | ------------------CGGACTTAATTG |
| Cuscuta californica occidentalis | (none) | ----------------------CTTAATTG |
| Cuscuta californica brachycalyx | (none) | ------------------------------ |
| Cuscuta californica 637 | (none) | ---------------------ACTTAATTG |
| Cuscuta californica 147 499 645 | (none) | -----------------------TTAATTG |
| Cuscuta burrelli | (none) | ------------------------------ |
| Cuscuta bifurcata | (none) | -------------------GGAGTTAATTG |
| Cuscuta australis tinei 640 | (none) | --------------GCTACGGACTTAATTG |
| Cuscuta australis tinei 639 | (none) | --------------GCTACGGACTTAATTG |
| Cuscuta australis 792 | (none) | -------------CGCTACGGACTTAATTG |
| Cuscuta australis 679 | (none) | ------------------CGGACTTAATTG |
| Cuscuta australis 547 | (none) | ------------------CGGACTTAATTG |
| Cuscuta aurea | (none) | ---------------------ACTTAATTG |
| Cuscuta ariesteguietae | (none) | ----------TGACGCTACGGACTTAATTG |
| Cuscuta applanata 674 | (none) | ------------------------------ |
| Cuscuta applanata 535 | (none) | ----------------------------TG |
| Cuscuta applanata 508 | (none) | ---------------CTACGGACTTAATTG |
| Cuscuta applanata 507 | (none) | ------------------------------ |
| Cuscuta americana | (none) | ---------------------------TTG |
| Cuscuta aff. floribunda | (none) | -----------------ACGGACTTAATTG |
| Cuscuta acuta | (none) | ----------------TACGGACTTAATTG |
Columns
None of the columns has a description.
