@ARTICLE{TreeBASE2Ref14662,
author = {Todd Barkman and Joel R McNeal and S. H. Lim and Gwen Coat and Henrietta B. Croom and Nelson D. Young and Claude W. dePamphilis},
title = {Mitochondrial DNA suggests at least 11 origins of parasitism in angiosperms and reveals genomic chimerism in parasitic plants},
year = {2007},
keywords = {},
doi = {},
url = {},
pmid = {},
journal = {BMC Evolutionary Biology},
volume = {},
number = {},
pages = {},
abstract = {Background Some of the most difficult phylogenetic questions in evolutionary biology involve identification of the free-living relatives of parasitic organisms, particularly those of parasitic flowering plants. Consequently, the number of origins of parasitism and the phylogenetic distribution of the heterotrophic lifestyle among angiosperm lineages is unclear. Results Here we report the results of a phylogenetic analysis of 102 species of seed plants designed to infer the position of all haustorial parasitic angiosperm lineages using three mitochondrial genes: atp1, coxI, and matR. Overall, the mtDNA phylogeny agrees with independent studies in terms of non-parasitic plant relationships and reveals at least 11 independent origins of parasitism in angiosperms, eight of which consist entirely of holoparasitic species that lack photosynthetic ability. From these results, it can be inferred that modern-day parasites have disproportionately evolved in certain lineages and that the endoparasitic habit has arisen by convergence in four clades. In addition, reduced taxon, single gene analyses revealed multiple horizontal transfers of atp1 from host to parasite lineage, suggesting that parasites may be important vectors of horizontal gene transfer in angiosperms. Furthermore, in Pilostyles we show evidence for a recent host-to-parasite atp1 transfer based on a chimeric gene sequence that indicates multiple historical xenologous gene acquisitions have occurred in this endoparasite. Finally, the phylogenetic relationships inferred for parasites indicate that the origins of parasitism in angiosperms are strongly correlated with horizontal acquisitions of the invasive coxI group I intron. Conclusions Collectively, these results indicate that the parasitic lifestyle has arisen repeatedly in angiosperm evolutionary history and results in increasing parasite genomic chimerism over time.}
}
Matrix 41114 of Study 1950

Citation title:
"Mitochondrial DNA suggests at least 11 origins of parasitism in angiosperms and reveals genomic chimerism in parasitic plants".

This study was previously identified under the legacy study ID S1932
(Status: Published).
Matrices
Title: Cytb Matrix
Rows
|
Taxon Label |
Row Segments |
Characters 1?–30 |
| Homonota andicola LJAMMCNP12493 |
(none)
|
TTCGAAAAACCCACCCCGTAATTAAAATTA |
| Homonota andicola LJAMMCNP12495 |
(none)
|
TTCGAAAAACCCACCCCGTAATTAAAATTA |
| Homonota borellii LJAMMCNP12116 |
(none)
|
?????????????????????????????? |
| Homonota borellii LJAMMCNP12125 |
(none)
|
?????????????????????????????? |
| Homonota darwinii LJAMMCNP11424 |
(none)
|
TACGAAAAGCCCACCCAGTAATCAAGATTA |
| Homonota darwinii LJAMMCNP9266 |
(none)
|
TACGAAAAGCCCACCCAGTAATCAAGATTA |
| Homonota spa LJAMMCNP10577 |
(none)
|
TACGAAAAACTCACCCAACAATCAAACTCA |
| Homonota spa LJAMMCNP5047 |
(none)
|
TACGAAAAACTCACCCAACAATCAAACTCA |
| Garthia gaudichaudi IBEG1.1 |
(none)
|
?????????????????????????????? |
| Garthia gaudichaudi IBEG1.2 |
(none)
|
?????????????????????????????? |
| Gymnodactylus geckoides LG1050 |
(none)
|
TCCGAAAAACACATCCGACCATCAAATTAA |
| Gymnodactylus geckoides LG911 |
(none)
|
TCCGAAAAACACATCCGACCATCAAATTAA |
| Phyllodactylus kofordi TG266 |
(none)
|
?????????????????????????????? |
| Phyllopezus przewalskii LJAMMCNP12089 |
(none)
|
TACGCAAAACACACCCCGTATTAAAAATCA |
| Phyllopezus pollicaris CHUNB57388 |
(none)
|
TACGTAAAACCCACCCAACATTAAAAATTA |
| Homonota rupicola RUPI1 |
(none)
|
TCCGGAAAACCCACCCAACCATTAAACTCG |
| Homonota rupicola RUPI2 |
(none)
|
TCCGGAAAACCCACCCAACCATTAAACTCG |
| Homonota spb MNHNP11406 |
(none)
|
?????????????????????????????? |
| Homonota spb MNHNP11409 |
(none)
|
TACGAAAAACCCACCCAGTAATCAAGCTCA |
| Homonota taragui LJAMMCNP14419 |
(none)
|
TCCGAAAAACCCACCCAGTCATTAAACTCA |
| Homonota taragui LJAMMCNP14420 |
(none)
|
TCCGAAAAACCCACCCAGTCATTAAACTCA |
| Homonota underwoodi LJAMMCNP10923 |
(none)
|
TACGAAAGACTCACCCAATTATAAAACTTA |
| Homonota underwoodi LJAMMCNP10931 |
(none)
|
TACGAAAGACTCACCCAATTATAAAACTTA |
| Homonota uruguayensis UFRGS1568 |
(none)
|
?????????????????????????????? |
| Homonota whitii LJAMMCNP14387 |
(none)
|
TTCGAAAAACCCACCCAGTAATTAAAATTA |
| Homonota whitii LJAMMCNP14388 |
(none)
|
TTCGAAAAACCCACCCAGTAATTAAAATTA |
| Homonota williamsii LJAMMCNP4467 |
(none)
|
TGCGAAAAACCCACCCAGTAATCAAGATCA |
| Homonota williamsii LJAMMCNP6517 |
(none)
|
TGCGAAAAACCCACCCAGTAATCAAGATCA |
Columns
None of the columns has a description.