@ARTICLE{TreeBASE2Ref15226,
author = {Elsie Magrietha de Meyer and Z. W. d. Beer and Richard C. Summerbell and Ahmad Mohammad Moharram and G. S. d. Hoog and Hester F. Vismer and Michael J Wingfield},
title = {Taxonomy and phylogeny of new wood- and soil-inhabiting Sporothrix species in the Ophiostoma stenoceras - Sporothrix schenckii complex},
year = {2008},
keywords = {},
doi = {},
url = {},
pmid = {},
journal = {Mycologia},
volume = {},
number = {},
pages = {},
abstract = {Sporothrix, one of the anamorph genera of Ophiostoma, includes the important human pathogen S. schenckii and various fungi associated with insects and sapstain of wood. A survey of fungi from wooden utility poles in South Africa yielded two distinct groups of Sporothrix isolates from different geographical areas. DNA sequence and morphological data derived in this study showed that isolates in these groups represent two novel species in the S. schenckii O. stenoceras species complex. A new species isolated from pine poles and rosebush wood and phylogenetically closely related to S. pallida, is described here as Sporothrix stylites. Phylogenetic analysis also confirmed the synonymy of S. albicans and S. nivea with S. pallida. Sporothrix stylites and S. pallida are also closely related to the isolates from soil, previously treated as environmental isolates of S. schenckii. Soil isolates are clearly distinct from human isolates of S. schenckii. We describe the former here as Sporothrix humicola. The isolates from eucalypt poles group peripheral to most other species in the S. schenckii - O. stenoceras complex, and are newly described as Sporothrix lignivora. Phylogenetic analysis of sequences of isolates from soil and wood together with those of clinical isolates showed that the human-pathogenic strains form an aggregate of several cryptic species.}
}
Matrix 2693 of Study 2018

Citation title:
"Taxonomy and phylogeny of new wood- and soil-inhabiting Sporothrix species in the Ophiostoma stenoceras - Sporothrix schenckii complex".

This study was previously identified under the legacy study ID S2010
(Status: Published).
Matrices
Title: LrRNA Grp-I Intron
Description: Legacy TreeBASE Matrix ID = M782
Rows
|
Taxon Label |
Row Segments |
Characters 1?–30 |
| Hebeloma crustuliniforme ICG 3 strain 679 |
(none)
|
GTTTT1110G100TTT0010011TG10G00 |
| Hebeloma crustuliniforme ICG 3 strain 699 |
(none)
|
GTTTT1110G100TTT0010011TG10G00 |
| Hebeloma helodes ICG 20 strain 688 |
(none)
|
GTTTT1100G100TTT0010011TG1TG00 |
| Hebeloma crustuliniforme ICG 3 strain 686 |
(none)
|
GTTTT1110G100TTT0010011TG10G00 |
| Hebeloma crustuliniforme ICG 3 strain 680 |
(none)
|
GTTTT1110G100TTT0010011TG1TG00 |
| Hebeloma crustuliniforme ICG 1 strain 673 |
(none)
|
GTTTT1110G1001TT0010011TG1TG00 |
| Hebeloma crustuliniforme ICG 2 strain 671 |
(none)
|
GTTTT1110G100---10--111TG1TG00 |
| Hebeloma helodes ICG 21 strain 650 |
(none)
|
GTTTT1110G100TTT0010011TG10T00 |
| Hebeloma crustuliniforme ICG 2 strain 627 |
(none)
|
GTTTT1110G100---10--111TG1TG00 |
| Hebeloma crustuliniforme ICG 2 strain 626 |
(none)
|
GTTTT1110G100---10--111TG1TG00 |
| Hebeloma lutense ICG 15 strain 624 |
(none)
|
GTTTT1100GG00TTT001T011T01TG00 |
| Hebeloma crustuliniforme ICG 1 strain 621 |
(none)
|
GTTTT1110G1001TT0010011TG1TG00 |
| Hebeloma crustuliniforme ICG 2 strain 620 |
(none)
|
GTTTT1110G100---10--111TG1TG00 |
| Hebeloma crustuliniforme ICG 1 strain 618 |
(none)
|
GTTTT1110G1001TT0010011TG1TG00 |
| Hebeloma crustuliniforme ICG 4 strain 617 |
(none)
|
GTTTT1110G100TTT0010011TG10G00 |
| Hebeloma crustuliniforme ICG 4 strain 605 |
(none)
|
GTTTT1110G100TTT0010011TG1TG00 |
| Hebeloma crustuliniforme ICG 4 strain 602 |
(none)
|
GTTTT1110G1001TT0T10011TG1TG00 |
| Hebeloma crustuliniforme ICG 5 strain 581 |
(none)
|
TTTTT1110G1001TT00100T1TG1TG00 |
| Hebeloma crustuliniforme ICG 2 strain 570 |
(none)
|
GTTTT1110G100---10--111TG1TG00 |
| Hebeloma lutense ICG 14 strain 566 |
(none)
|
GTTTT1110G1001TT0010011TG1TG00 |
| Hebeloma helodes ICG 9 strain 538 |
(none)
|
TTTTT1110G100TTT0010011TG1TG00 |
| Hebeloma crustuliniforme ICG 3 strain 511 |
(none)
|
GTTTT1110G100TTT0010011TG1TG00 |
| Hebeloma crustuliniforme ICG 1 strain 503 |
(none)
|
GTTTT1110G1001TT0010011TG1TG00 |
Columns
None of the columns has a description.