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Matrix 8461 of Study 20306
Citation title: "Evolutionary phylogeography and transmission pattern of echovirus 14: an exploration of spatiotemporal dynamics based on the 26-year acute flaccid paralysis surveillance in Shandong, China".
Study name: "Evolutionary phylogeography and transmission pattern of echovirus 14: an exploration of spatiotemporal dynamics based on the 26-year acute flaccid paralysis surveillance in Shandong, China".
This study is part of submission 20306
(Status: Published).
Matrices
Title: 10 16 Sub 90 protein
Description: Amino acid section of concatenaed dataset
Rows
| Taxon Label | Row Segments | Characters 1?–30 |
|---|---|---|
| Acanthamoeba castellanii | (none) | EREENVYMAKLCEQAERYDEMVEAMKKVAT |
| Alexandrium tamarense | (none) | ?????????????????????????????? |
| Allomyces macrogynus | (none) | ERDNQVYMAKLCEQAERYDEMVTFMKEVAK |
| Amastigomonas bermudensis | (none) | ------------------------------ |
| Amastigomonas sp. ATCC 50062 | (none) | ------------------------------ |
| Amoebidium parasiticum | (none) | AREDNVYRAKLAEQAERYDEMVNAMKEVAK |
| Aplysia californica | (none) | ------------------------------ |
| Arabidopsis thaliana | (none) | SREENVYLAKLAEQAERYEEMVEFMEKVAK |
| Aureococcus anophagefferens | (none) | ERDDLVYLAKLAEQAERFDEMVEHMKTVAG |
| Bigelowiella natans | (none) | KRENLVYMARCAEVAERYEDMCKIMKLLVQ |
| Blastocystis hominis | (none) | ?????????????????????????????? |
| Branchiostoma floridae | (none) | ------------------------------ |
| Breviata anathema | (none) | ------------------------------ |
| Caenorhabditis elegans | (none) | GKEELVNRAKLAEQAERYDDMAACMKKVTE |
| Candida albicans | (none) | SREDCVYLAKLAEQAERYEEMVENMKAVAC |
| Capitella capitata | (none) | SREDFVQRAKLAEQAERYDDMAAAMKKVTE |
| Capsaspora owczarzaki | (none) | ERDDCVYLAKLCEQAERYDDMAEAMKKVVK |
| Chlamydomonas reinhardtii | (none) | DREECVYMAKLAEQAERYDEMVEEMKKVAK |
| Chondrus crispus | (none) | ------YLAKLAEQAERYDEMVKEMAKVAH |
| Ciona intestinalis | (none) | EREDLVYKAKLAEQAERYDEMVECMQAVAK |
| Cryptosporidium parvum | (none) | ARECNVYMAKLAEQAERYDEMAKYMKDVVE |
| Cyanophora paradoxa | (none) | -------------------SRALRDGRAMK |
| Dictyostelium discoideum | (none) | TREENVYMAKLAEQAERYEEMVEAMKKVAE |
| Dimorpha sp | (none) | ------------------------------ |
| Diplonema papillatum | (none) | ------------------------------ |
| Drosophila melanogaster | (none) | DKEELVQKAKLAEQCERYDDMAQAMKCVTE |
| Eimeria tenella | (none) | LREEHVYRAKLAEQAERYDEMAEAMKNLVE |
| Emiliania huxleyi | (none) | EVEDNVYMAKLAEQAERYEEMVEYMKKVAQ |
| Encephalitozoon cuniculi | (none) | QYEEALQKANLCDMAERYDDMAKEMRLAVT |
| Entamoeba histolytica | (none) | SREDCVYTAKLAEQCERYDEMVQCMKQVAE |
| Entodinium caudatum | (none) | ??????YLAMLAEQCCRYKEMVQFLEDMVK |
| Euglena gracilis | (none) | EHENLVFLAKLAEQAERYDEMVNCMKKVVK |
| Euglena longa | (none) | ------------------------------ |
| Gallus gallus | (none) | DKCELVQKAKLAEQAERYDDMAAAMKAVTE |
| Giardia lamblia | (none) | TREDYVFMAQLNENAERYDEMVETMRKICG |
| Ginkgo biloba | (none) | ERENHVYMAKLAEQAERYDEMVECMKKVAK |
| Glaucocystis nostochinearum | (none) | ------------------------------ |
| Guillardia theta | (none) | SREENVYMAKLAEQAERYDEMVEAMKCIAK |
| Hartmannella vermiformis | (none) | ??????????????????????????KVAQ |
| Heteromita globosa | (none) | ------LPWPPCWALRCCCHRCLLRCCCTT |
| Homo sapiens | (none) | DKCELVQKAKLAEQAERYDDMAAAMKAVTE |
| Isochrysis galbana | (none) | ??????YMAKLAEQAERYEEMVDYMKEVAR |
| Jakoba libera | (none) | QREECVFLAKICEQAERYDEMMEQMKKVAA |
| Karena brevis | (none) | PRDKDVYFAKLAEQAERYDEMADYMEAVGK |
| Leishmania major | (none) | DLAELIYMAKLAEEAERFDEMLLCIRKYVR |
| Malawimonas jakobiformis | (none) | SNEDLIYMAKLMEQAERYADMVALMKTVAT |
| Mesostigma viride | (none) | SREDYVYMVKLAEQAERYDEMVECMREVAK |
| Mnemiopsis leidyi | (none) | ?RTELAARARLAEQAERYEDMACYMKKVTL |
| Monosiga brevicollis | (none) | DREDIVCQAKLAEQAERYDDMANAMKKVTE |
| Naegleria gruberi | (none) | TREDNVFMAKLAEQAERYDEMVQCMKRVAQ |
| Nematostella vectensis | (none) | DKEEHVYMAKLAEQAERYDDMVNCMKEVAK |
| Nyctotherus ovalis | (none) | TVEEAVFMGKVAEQAERYEDMLTFLQPLMK |
| Oryza sativa | (none) | SREENVYMAKLAEQAERYEEMVEFMEKVAK |
| Oscarella carmela | (none) | -------------------EMVERMKKVAQ |
| Paramecium caudatum | (none) | TREELIYMTKLTEQTERFEDMVNYIKQVVE |
| Pavlova lutheri | (none) | ??????YQAKLAEQAERYDEMMKFMKDVA- |
| Perkinsus marinus | (none) | EREKNVYLCKLAEQAERYDEMACFMKAVAE |
| Phaeodactylum tricornutum | (none) | DRDCLVYKAKLAEQAERFDEMVTDMKDVAR |
| Phanerochaete chrysosporium | (none) | ??EDCVYLAKLAEQAERYEEMVENMKRVAC |
| Phreatamoeba balamuthi | (none) | GREDCVYMAKLAEQAERYDEMVCCMKKVAQ |
| Physarum polycephalum | (none) | SREDCVYMAKLAEQAERYDEMVEAMKRVAK |
| Physcomitrella patens | (none) | AREENVYMAKLAEQAERYDEMVEAMEKVAK |
| Phytophthora infestans | (none) | DRDCLVFLAKLAEQAERYDEMVDHMKAVAN |
| Planomonas micra | (none) | ------------------------------ |
| Plasmodium berghei | (none) | ?????????????????FAEMADAMRTLVE |
| Porphyra yezoensis | (none) | ARDKAVYLAKLAEQAERYDEMVEEMRKVA- |
| Prymnesium parvum | (none) | PMMCKCCWPCCPCRRVRYDEMVNFMKTYVA |
| Reclinomonas americana | (none) | ------------------------------ |
| Reticulomyxa filosa | (none) | ???????????????????????FVKALVQ |
| Saccharomyces cerevisiae | (none) | SREDCVYLAKLAEQAERYEEMVENMKTVAC |
| Sawyeria marylandensis | (none) | EREDNVYMAKLAEQAERYEEMVQYMKKVAQ |
| Schistosoma mansoni | (none) | ?????????????????????????????? |
| Schizosaccharomyces pombe | (none) | SREDAVYLAKLAEQAERYEGMVENMKCVAC |
| Seculamonas ecuadoriensis | (none) | TKEEHVFMAKIAEQAERYEEMVDCMKKVAA |
| Sphaeroforma arctica | (none) | ???DCVYKAKLAEQAERYDEMVDAMKKVAC |
| Spironucleus vortens | (none) | -REELVFIAQLNENAERYDDMIDTMKKIIA |
| Spizellomyces punctatus | (none) | ------------------------------ |
| Strongylocentrotus purpuratus | (none) | ???????MAKLAEQAERYDEMVNHMKDVAR |
| Subulatomonas tetraspora | (none) | ------------------------------ |
| Tetrahymena thermophila | (none) | TREELIYLAKICEQTERFEDMLENMKQVVK |
| Thalassiosira pseudonana | (none) | DRDCLVYKAKLAEQAERFDEMVCDMKEVAR |
| Theileria parva | (none) | HRCELIYTAKLAEQAERYDEMANAMKTLVE |
| Toxoplasma gondii | (none) | LRDEYVYKAKLAEQAERYDEMAEAMKNLVE |
| Trichomonas vaginalis | (none) | RDIAIYTAQIL-DQTNLPEEMITLMKRVIE |
| Trimastix pyriformis | (none) | QRADFVYMAKLHEQAERYEEMVQCMKNVAK |
| Trypanosoma brucei | (none) | ATKDLVFMAKLTEEAERYDEMVQCMRKLVK |
| Ustilago maydis | (none) | SREDCVYLAKLAEQAERYEEMVENMKRVAC |
| Volvox carteri | (none) | DREECVYMAKLAEQAERYDEMVEEMKKVAK |
| Welwitschia mirabilis | (none) | LREENVYMAKLAEQAERYEEMVEFMEKVTK |
Columns
None of the columns has a description.
