TreeBASE Search-Matrix 11614 of study 2034

@ARTICLE{TreeBASE2Ref14622, author = {Mahdi Arzanlou and Johannes (Ewald) Zacharias Groenewald and R. A. Fullerton and Edwin C.A. Abeln and Jean Carlier and M. F. Zapater and I. W. Buddenhagen and Altus Viljoen and Pedro W. Crous}, title = {Multiple gene genealogies and phenotypic characters differentiate several novel species of Mycosphaerella and related anamorphs on banana}, year = {2008}, keywords = {}, doi = {}, url = {}, pmid = {}, journal = {Persoonia}, volume = {20}, number = {}, pages = {19--37}, abstract = {Three species of Mycosphaerella, namely M. fijiensis, M. musicola and M. eumusae are involved in the Sigatoka disease complex of bananas. Besides these three primary pathogens, several additional species of Mycosphaerella or their anamorphs have been described from Musa. However, very little is known about these taxa, and for the majority of these species no culture or DNA is available for study. In the present study, we collected a global set of Mycosphaerella strains from banana, and compared them by means of morphology and a multi-gene nucleotide sequence data set. The phylogeny inferred from the ITS region and the combined data set containing partial gene sequences of the actin gene, the small subunit mitochondrial ribosomal DNA and the histone H3 gene revealed a rich diversity of Mycosphaerella species on Musa. Integration of molecular and morphological data sets confirmed more than 20 species of Mycosphaerella (incl. anamorphs) to occur on banana. This study reconfirmed the previously described presence of Cercospora apii, M. citri and M. thailandica, and also identified Mycosphaerella communis, M. lateralis and Passalora loranthi on this host. Moreover, eight new species identified from Musa are described, namely Dissoconium musae Arzanlou & Crous, Mycosphaerella mozambica Arzanlou & Crous, P. assamensis Arzanlou & Crous, Pseudocercospora indonesiana Arzanlou & Crous, P. longispora Arzanlou & Crous, Stenella musae Arzanlou & Crous, S. musicola Arzanlou & Crous, and S. queenslandica Arzanlou & Crous.} }

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Matrix 11614 of Study 2034

Citation title: "Multiple gene genealogies and phenotypic characters differentiate several novel species of Mycosphaerella and related anamorphs on banana".

This study was previously identified under the legacy study ID S2028 (Status: Published).

Matrices

Title: ITS dataset for Octaviania networks

Rows

Taxon Label	Row Segments	Characters 1?–30
Octaviania nonae Amami_oshima_1 JN257985	(none)	TCATTATTG-AA-TTAA-----AAGATTGT
Octaviania nonae Amami_oshima_2 JN257986	(none)	TCATTATTG-AA-TTAA-----AAGATTGT
Octaviania nonae Hiroshima JN257989	(none)	TCATTATTG-AA-TTAA-----AAGATTGT
Octaviania nonae Mie JN257987	(none)	TCATTATTG-AA-TTAA-----AAGATTGT
Octaviania nonae Hyogo JN257988	(none)	TCATTATTG-AA-TTAA-----AAGATTGT
Octaviania nonae Oita JN257990	(none)	TCATTATTG-AA-TTAA-----AAGATTGT
Octaviania decimae Oita_1 JN257993	(none)	TCATTAAAG--A-TTAA-----TAGATTGT
Octaviania decimae Aichi EU414289	(none)	------AAG--A-TTAA-----TAGATTGT
Octaviania decimae Nara_1 EU414291	(none)	------AAG--A-TTAA-----TAGATTGT
Octaviania decimae Kyoto_2 JN257992	(none)	TCATTAAAG--A-TTAA-----TAGATTGT
Octaviania decimae Kyoto_1 JN257991	(none)	TCATTAAAG--A-TTAA-----TAGATTGT
Octaviania decimae Oita_2 JQ619187	(none)	TCATTAAAG--A-TTAA-----TAGATTGT
Octaviania decimae Nara_2 JQ619166	(none)	TCATTAAAG--A-TTAA-----TAGATTGT
Octaviania mortae Kyoto_2 JN257996	(none)	TCATTATTG-AATTTAAATTTAAAGATTGT
Octaviania mortae Kyoto_1 JN257995	(none)	TCATTATTG-AATTTAAATTTAAAGATTGT
Octaviania mortae Tottori JN257994	(none)	TCATTATTG-AATTTAAATTTAAAGATTGT
Octaviania mortae Ehime JQ619167	(none)	TCATTATTG-AATTTAAATTTAAAGATTGT
Octaviania celatifilia Nara_1 JN257997	(none)	TCATTA-AG-GA--TAA------AGAT-G-
Octaviania celatifilia Nara_3 JQ619168	(none)	TCATTA-AG-GA--TAA------AGAT-G-
Octaviania celatifilia Nara_2 JQ619169	(none)	TCATTA-AG-GA--TAA------AGAT-G-
Octaviania asterosperma Spain JN257998	(none)	TCATTATAGTAACAACA-------GATTGT
Octaviania asterosperma EU784378	(none)	TCATTATAGTAACAACA-------GATTGT
Octaviania asterosperma EU784379	(none)	TCATTATAGTAACAACA-------GATTGT

Columns

None of the columns has a description.