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Matrix 6042 of Study 10623
Citation title: "The agaricoid genus Kinia is a new member of the Pluteoid clade subordinate to Melanoleuca".
Study name: "The agaricoid genus Kinia is a new member of the Pluteoid clade subordinate to Melanoleuca".
This study is part of submission 10613
(Status: Published).
Matrices
Title: Kinia Alignment LSU
Rows
| Taxon Label | Row Segments | Characters 1?–30 |
|---|---|---|
| Amanita brunnescens AF097379 | (none) | TTAAAATCTGGCAG-TGTTTC---ATTGTC |
| Amanita citrina FJ890046 | (none) | TTAAAATCTGACAG-TGTTTT---GCTGTC |
| Amanita muscaria FJ890038 | (none) | TTAAAATCTGGCAG-TGTTTT---GCTGTC |
| Amanita phalloides DQ071721 | (none) | TTAAAATCTGGCAGATGTTTG---TCTGTC |
| Clitocybe quercina AY207158 | (none) | TTAAAATCTGGCGGTCCTTGTG--GCCGTC |
| Hohenbuehelia tristis AF135171 | (none) | TTGTAATCTGGCGGTCTTTG----GCCGTC |
| Kinia privernensis FN825672 | (none) | TTAAAATCTGGCAGTCTCTG----GCTGTC |
| Limnoperdon incarnatum AF426958 | (none) | TTAAAATCTGGCAGTCTTTG----GCTGTC |
| Lyophyllum decastes AY207228 | (none) | TTGTAATCTGGCAGGCTCCGC----CTGTC |
| Melanoleuca alboflavida AF139965 | (none) | TTAAAATCTGGCAGTCTCTG----CCTGTC |
| Melanoleuca alboflavida AF261434 | (none) | TTAAAATCTGGCAGTCTCTG----GCTGTC |
| Melanoleuca alboflavida EF535263 | (none) | TTAAAATCTGGCAGTCTCTG----GCTGTC |
| Melanoleuca cognata AF261433 | (none) | TTAAAATCTGGCAGTCTCTG----ATTGTC |
| Melanoleuca melaleuca AM946458 | (none) | TTAAAATCTGGCAGTCTCTG----GCTGTC |
| Melanoleuca melaleuca DQ071730 | (none) | TTAAAATCTGGCAGTCTCTG----GCTGTC |
| Melanoleuca melaleuca EU621790 | (none) | TTAAAATCTGGCAGTCTCTG----GCTGTC |
| Omphaliaster borealis AF261391 | (none) | TTAAAATCTGGTAGTCTTTG----GCTGCC |
| Pleurotus ostreatus EU365665 | (none) | TTAAAATCTGGTGGTCTTTG----GCCATC |
| Pluteus atromarginatus AF261572 | (none) | TTAAAATCTGGCGGTCTCTG----GCTGTC |
| Pluteus aurantiorugosus AF261579 | (none) | TTAAAATCTGGCGGTCTCTG----GCTGTC |
| Pluteus brunneoradiatus AF261567 | (none) | TTAAAATCTGGCGGTCTCTG----GCTGTC |
| Pluteus cervinus DQ071729 | (none) | TTAAAATCTGGCGGTCTCTG----GCTGTC |
| Pluteus ephebeus AF261574 | (none) | TTAAAATCTGGCAGTCTCTG----GCTGTC |
| Pluteus pellitus AF261571 | (none) | TTAAAATCTGGCGGTCTCTG----GCTGTC |
| Pluteus petasatus AF042611 | (none) | TTAAAATCTGGCGGTCTCTG----GCTGTC |
| Pluteus pouzarianus AF261568 | (none) | TTAAAATCTGGCGGTCTCTG----ACTGTC |
| Pluteus primus Isolate AF042610 | (none) | TTAAAATCTGGCGGTCTCTG----GCTGTC |
| Pluteus romellii AY634279 | (none) | TTAAAATCTGGCAGTCTCTG----GCTGTC |
Yikes!javax.el.ELException: Error reading [describedColumns] on type [org.cipres.treebase.domain.matrix.StandardMatrix] at javax.el.BeanELResolver.getValue(BeanELResolver.java:104) at org.apache.jasper.el.JasperELResolver.getValue(JasperELResolver.java:112) at org.apache.el.parser.AstValue.getValue(AstValue.java:168) at org.apache.el.ValueExpressionImpl.getValue(ValueExpressionImpl.java:189) at org.apache.jasper.runtime.PageContextImpl.proprietaryEvaluate(PageContextImpl.java:942) at org.apache.jsp.WEB_002dINF.pages.search.study.matrix_jsp._jspx_meth_c_005fset_005f5(matrix_jsp.java:1335) at org.apache.jsp.WEB_002dINF.pages.search.study.matrix_jsp._jspService(matrix_jsp.java:310) at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70) at javax.servlet.http.HttpServlet.service(HttpServlet.java:583) at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:465) at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:383) at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:331) at javax.servlet.http.HttpServlet.service(HttpServlet.java:583) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:212) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156) at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:51) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156) at com.opensymphony.module.sitemesh.filter.PageFilter.doFilter(PageFilter.java:39) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156) at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:662) at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:428) at org.apache.catalina.core.ApplicationDispatcher.doForward(ApplicationDispatcher.java:360) at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:297) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at net.bull.javamelody.JspWrapper.invoke(JspWrapper.java:152) at net.bull.javamelody.JdbcWrapper$DelegatingInvocationHandler.invoke(JdbcWrapper.java:294) at com.sun.proxy.$Proxy159.forward(Unknown Source) at org.springframework.web.servlet.view.InternalResourceView.renderMergedOutputModel(InternalResourceView.java:142) at org.springframework.web.servlet.view.AbstractView.render(AbstractView.java:239) at org.springframework.web.servlet.DispatcherServlet.render(DispatcherServlet.java:1142) at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:879) at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:792) at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:476) at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:431) at javax.servlet.http.HttpServlet.service(HttpServlet.java:489) at javax.servlet.http.HttpServlet.service(HttpServlet.java:583) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:212) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156) at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:51) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156) at net.bull.javamelody.MonitoringFilter.doFilter(MonitoringFilter.java:239) at net.bull.javamelody.MonitoringFilter.doFilter(MonitoringFilter.java:215) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156) at org.tuckey.web.filters.urlrewrite.RuleChain.handleRewrite(RuleChain.java:164) at org.tuckey.web.filters.urlrewrite.RuleChain.doRules(RuleChain.java:141) at org.tuckey.web.filters.urlrewrite.UrlRewriter.processRequest(UrlRewriter.java:90) at org.tuckey.web.filters.urlrewrite.UrlRewriteFilter.doFilter(UrlRewriteFilter.java:406) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156) at org.displaytag.filter.ResponseOverrideFilter.doFilter(ResponseOverrideFilter.java:125) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156) at org.springframework.orm.hibernate3.support.OpenSessionInViewFilter.doFilterInternal(OpenSessionInViewFilter.java:198) at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:75) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156) at com.opensymphony.module.sitemesh.filter.PageFilter.parsePage(PageFilter.java:119) at com.opensymphony.module.sitemesh.filter.PageFilter.doFilter(PageFilter.java:55) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156) at org.acegisecurity.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:264) at org.acegisecurity.intercept.web.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:107) at org.acegisecurity.intercept.web.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:72) at org.acegisecurity.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:274) at org.acegisecurity.ui.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:110) at org.acegisecurity.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:274) at org.acegisecurity.wrapper.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:81) at org.acegisecurity.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:274) at org.acegisecurity.ui.AbstractProcessingFilter.doFilter(AbstractProcessingFilter.java:217) at org.acegisecurity.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:274) at org.acegisecurity.context.HttpSessionContextIntegrationFilter.doFilter(HttpSessionContextIntegrationFilter.java:191) at org.acegisecurity.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:274) at org.acegisecurity.util.FilterChainProxy.doFilter(FilterChainProxy.java:148) at org.acegisecurity.util.FilterToBeanProxy.doFilter(FilterToBeanProxy.java:90) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156) at net.bull.javamelody.MonitoringFilter.doFilter(MonitoringFilter.java:199) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:168) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:90) at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:483) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:130) at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:93) at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:679) at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:74) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:346) at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:617) at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:63) at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:934) at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1690) at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:52) at org.apache.tomcat.util.threads.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1191) at org.apache.tomcat.util.threads.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:659) at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:63) at java.lang.Thread.run(Thread.java:750) Caused by: org.hibernate.LazyInitializationException: illegal access to loading collection at org.hibernate.collection.AbstractPersistentCollection.initialize(AbstractPersistentCollection.java:341) at org.hibernate.collection.AbstractPersistentCollection.read(AbstractPersistentCollection.java:86) at org.hibernate.collection.PersistentList.iterator(PersistentList.java:115) at java.util.Collections$UnmodifiableCollection$1.
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