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Citation
Taxa
Matrices
Trees
Analyses
Matrix 3253 of Study 2082
Citation title: "Taxonomic characterization of Shiraia-like fungi isolated".
This study was previously identified under the legacy study ID S2084
(Status: Published).
Matrices
Title: ITS-Shiraia
Description: Legacy TreeBASE Matrix ID = M3918
Rows
| Taxon Label | Row Segments | Characters 1?–30 |
|---|---|---|
| Paraphaeosphaeria michotii AF250829 | (none) | CATTCCTGCACCCTT?TTTTACGAGCACCT |
| Paraconiothyrium cyclothyrioides AY642529 | (none) | CATGTCTGAATCCTT?TTTTACGAGCACCT |
| Phaeosphaeria nodorum AF181708 | (none) | ?????ATCCACCCTTGTCTTTTGCGTACCC |
| Ophiosphaerella agrostis AF191548 | (none) | ??????ATTACCCTTGTTTTTTGAGTACCT |
| Epicoccum nigrum AF149926 | (none) | ????????TACCCATGTCTTTTGAGTACCT |
| Cladosporium herbarum AF177734 | (none) | TTATTCATAACCCTTTTTGTCC??GACTCT |
| Mycosphaerella graminicola AF181692 | (none) | CGACCTCCAACCCTTTGTGAAC?ACATCCC |
| Mycosphaerella citri AF181704 | (none) | CGACCTCCAACCCTTTGTGAAC??CAACCT |
| Mycosphaerella fijiensis AF181705 | (none) | CGACCTCCAACCCTTTGTGAACCACAACTT |
| Septoria passerinii AF181695 | (none) | CGACCTCCAACCCTTTGTGAAC?ACATCCC |
| Septoria tritici AJ300330 | (none) | CGACCTCCAACCCTTTGTGAAC?ACATCCC |
| Phoma glomerata DQ093699 | (none) | ????????TACCCATGTCTTTTGAGTACCT |
| Shiraia bambusicola NBRC 30147 | (none) | CCCCAGTCTGCCCATGTCTTTTGCGTACTA |
| Shiraia bambusicola NBRC 30312 | (none) | CCCCAGTCTGCCCATGTCTTTTGCGTACTA |
| Shiraia bambusicola NBRC 30737 | (none) | ?????GTCTGCCCATGTCTTTTGCGTACTA |
| Shiraia bambusicola NBRC 30738 | (none) | ?????GTCTGCCCATGTCTTTTGCGTACTA |
| Shiraia bambusicola NBRC 30739 | (none) | CCCCAGTCTGCCCATGTCTTTTGCGTACTA |
| Shiraia bambusicola NBRC 30752 | (none) | CCCCAGTCTGCCCATGTCTTTTGCGTACTA |
| Shiraia bambusicola NBRC 30753 | (none) | CCCCAGTCTGCCCATGTCTTTTGCGTACTA |
| Shiraia bambusicola NBRC 30754 | (none) | CCCCAGTCTCCCCATGTCTTTTGCGTACTA |
| Shiraia bambusicola NBRC 30755 | (none) | CCCCAGTCTGCCCATGTCTTTTGCGTACTA |
| Shiraia bambusicola NBRC 30771 | (none) | CCCCAGTCTGCCCATGTCTTTTGCGTACTA |
| Shiraia bambusicola NBRC 30772 | (none) | ?????GTCTGCCCATGTCTTTTGCGTACTA |
| Shiraia bambusicola NBRC 100220 | (none) | CCCCAGTCTGCCCATGTCTTTTGCGTACTA |
| Shiraia-like fungus JP7 | (none) | CCCCCGTCTGCCCATGTTTATTGCGTACTA |
| Shiraia-like fungus JP93b | (none) | TACCTGTCTGCCCATGTCTTTTGCGTACTA |
| Shiraia-like fungus JP185 | (none) | CTCCCGTCTGCCCATGTCTTTTGCGTACTA |
| Shiraia-like fungus JP151 | (none) | CGCCTGTCTGCCCATGTCTTTTGCGTACTA |
| Shiraia-like fungus JP256 | (none) | CCCCCGTCTGCCCATGTTTATTGCGTACTA |
| Shiraia bambusicola JCM1879 AB105798 | (none) | CCCCAGTCTGCCCATGTCTTTTGCGTACTA |
| Shiraia bambusicola Ppp2003 AY515304 | (none) | CCCCAGTCTGCCCATGTCTTTTGCGTACTA |
| Shiraia bambusicola Pn2003 AY536372 | (none) | CCCCAGTCTGCCCATGTCTTTTGCGTACTA |
| Shiraia bambusicola Bd2003 AY536374 | (none) | CCCCAGTCTGCCCATGTCTTTTGCGTACTA |
| Shiraia bambusicola Pa2003 AY536373 | (none) | CCCCAGTCTGCCCATGTCTTTTGCGTACTA |
| Shiraia-like fungus JP93 | (none) | CCCCCGTCTGCCCATGTTTATTGCGTACTA |
| Shiraia-like fungus JP232 | (none) | CCCCCGTCTGCCCATGTTTATTGCGTACTA |
| Shiraia sp. ML2004 AY425966 | (none) | CCCCCGTCTGCCCATGTTTTTTGCGTACTA |
| Neophaeosphaeria barrii AF466301 | (none) | AA?TATTCTACCCATGTCTTTTGCGTACTA |
| Leptosphaeria maculans AJ550873 | (none) | A????TTCTACCCATGTTTTTTGCGTACTA |
| Ampelomyces humuli ITS AF035779 | (none) | ????????TACCCATGTCTTTTAAGTACCT |
| Ampelomyces quercinus AF035778 | (none) | ????????TACCCATGTCTTTTAAGTACCT |
| Helminthosporium solani AF073912 | (none) | GGGGTCGGAACCCTC??????TGTCTACCT |
| Lophiostoma arundinis AF383952 | (none) | AACACAATAACCCTTGTTTTTTGTGCACCC |
Columns
None of the columns has a description.
