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Citation
Taxa
Matrices
Trees
Analyses
Matrix 3305 of Study 2102
Citation title: "Molecular systematics of the cotton root rot pathogen, Phymatotrichopsis omnivora".
This study was previously identified under the legacy study ID S2105
(Status: Published).
Matrices
Title: Combined LSU and SSU rDNA
Description: Legacy TreeBASE Matrix ID = M3994
Rows
| Taxon Label | Row Segments | Characters 1?–30 |
|---|---|---|
| Peziza succosa | (none) | -------------------ATGCATGTCTA |
| Sarcosphaera coronaria | (none) | ------------------------------ |
| Peziza vesiculosa | (none) | --GTCTCAAAGATTAAGCCATGCATGTCTA |
| Peziza lobulata | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Peziza subisabellina | (none) | ------------------------------ |
| Pachyella clypeata | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Pachyphloeus melanoxanthus | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Scabropezia scabrosa | (none) | ------------------------------ |
| Boudiera spp | (none) | -----TCAAAGATTAAGCCATGCATGTCTA |
| Peziza polaripapulata | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Iodowynnea auriformis | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Ascobolus carbonarius | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Ascobolus crenulatus | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Morchella elata | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Morchella esculenta | (none) | -------AAAGATTAAGCCATGCAAGTCTA |
| Disciotis venosa | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Verpa bohemica | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Verpa conica | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Leucangium carthusianum | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Fischerula subcaulis | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Hydnotrya cerebriformis | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Discina macrospora | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Gyromitra melaleucoides | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Pseudorhizia californica | (none) | --GTCTCAAAGATTAAGCCATGCATGTCTA |
| Choiromyces venosus | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Tuber gibbosum | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Dingleya verrucosa | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Reddellomyces donkii | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Labyrinthomyces varius | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Underwoodia columnaris | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Wynnella silvicola | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Balsamia magnata | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Barssia oregonensis | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Helvella cf compressa | (none) | TTGTCTCAAAGATTAAGCCATGCATGTGTC |
| Phymatotrichopsis ATCC 32446 RGT | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Phymatotrichopsis ATCC 22316 RGT | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Phymatotrichopsis SMM NFAlf | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Phymatotrichopsis ATCC 28960 RGT | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Phymatotrichopsis SMM ATCC32448 | (none) | -TGTCTCAAAGATTAAGCCATGCATGTCTA |
| Psilopezia deligata | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Psilopezia juruensis | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTC |
| Psilopezia cf nummularialis | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Caloscypha fulgens | (none) | --GTCTCAAAGATTAAGCCATGCATGTCTA |
| Rhizina undulata | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Strobiloscypha keliae | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Pyronema confluens | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Aleuria aurantia | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Melastiza cornubiensis | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Humaria hemisphaerica | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Genea harknessii | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Wilcoxina mikolae | (none) | ------------------CATGCATGTCTA |
| Parascutellinia carneosanguineo | (none) | ------------------------------ |
| Lasiobolidium spirale | (none) | TTGTCTCAAAGACTAAGCCATGCATGTCTA |
| Trichophaea hybrida | (none) | -------------------ATGCATGTCTA |
| Trichophaeopsis bicuspis | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Melastiza contorta | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Cheilymenia stercorea | (none) | ------------------------TGTCT- |
| Byssonectria terrestris | (none) | --------------------------TCTA |
| Pseudombrophila guldeniae | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Lasiobolidium orbiculoides | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Orbicula parietina | (none) | -----------------CCATGCATGTCTA |
| Pseudombrophila theioleuca | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Paurocotylis pila | (none) | -------------------ATGCATGTCTA |
| Tarzetta catinus | (none) | ------------------------------ |
| Geopyxis carbonaria | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Pulvinula archeri | (none) | ------------------CATGCATGTCTA |
| Lasiobolus ciliatus | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Eleutherascus lectardii | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Ascodesmis spp | (none) | -----TCAAAGATTAAGCCATGCATGTCTA |
| Pulchromyces ATCC 36770 RGT | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Pulchromyces ATCC 18595 RGT | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Scutellinia scutellata | (none) | -----TCAAAGATTAAGCCATGCATGTCTA |
| Miladina lecithina | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Geopora cervina | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Geopora cooperi f gilkyae | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Glaziella aurantiaca | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Tricharina praecox | (none) | ----CTCAAAGATTAAGCCATGCATGTCTA |
| Trichophaea woolhopeia | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Sphaerosporella brunnea | (none) | ---TCTCAAAGATTAAGCCATGCATGTCTA |
| Anthracobia sp | (none) | --------------------TGCGTGTCTA |
| Octospora hygrohypnophila | (none) | TTGTCTCAAAGATTAAGCCATGCAAGTCTA |
| Lamprospora ascoboloides | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Neottiella rutilans | (none) | ------------------------------ |
| Rhodotarzetta rosea | (none) | TTGTCTCAAAGATTAAGCCATGCAAGTCTA |
| Otidea onotica | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Sowerbyella imperialis | (none) | -----------------CCATGCATGTCTA |
| Donadinia sp | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Urnula craterium | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Pseudoplectania nigrella | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Chorioactis geaster | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Neournula pouchetii | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Desmazierella acicola | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Galiella rufa | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Wolfina aurantiopsis | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Cookeina tricholoma | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Nanoscypha tetraspora | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Sarcoscypha austriaca | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Pseudopithyella minuscula | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Neolecta vitellina | (none) | ---------------------GCATGTCTA |
| Iodophanus carneus | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Marcelleina tuberculispora | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Marcelleina personii | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Peziza gerardii | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Peziza quelepidotia | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Cazia flexiascus | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Peziza badiofusca | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
| Terfezia spp | (none) | -------AAAGATTAAGCCATGCATGTCTA |
| Peziza michelii | (none) | TTGTCTCAAAGATTAAGCCATGCATGTCTA |
Columns
None of the columns has a description.
