Go to search
Citation
Taxa
Matrices
Trees
Analyses
Matrix 3233 of Study 2108
Citation title: "A Phylogenomic study of birds reveals their evolutionary history".
This study was previously identified under the legacy study ID S2079
(Status: Published).
Matrices
Title: PCBD1
Description: Legacy TreeBASE Matrix ID = M3898
Rows
| Taxon Label | Row Segments | Characters 1?–30 |
|---|---|---|
| Alligator mississippiensis | (none) | TGCGAGAGATGCCATCTTCAAGGAATTCCA |
| Gavialis gangeticus | (none) | TGGGAGAGATGCCATCTTCAAGGAATTCCA |
| Acanthisitta chloris | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCC{ |
| Aegotheles insignis | (none) | TGGCAGAGACGCGATCTTCAAAGAGTTCCA |
| Aerodramus vanikorensis | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCCA |
| Alcedo leucogaster | (none) | AGGCAGAGATGCCATCTTCAAGGAGTTCCA |
| Alectura lathami | (none) | AGGAAGAGATGCCATCTTCAAAGAGTTCCA |
| Alisterus scapularis | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTTCA |
| Anas platyrhynchos | (none) | AGGCAGAGATGCCATCTTCAAGGAGTTCCA |
| Anhinga anhinga | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Anser erythropus | (none) | AGGTAGAGATGCCATCTTCAAAGAGTTCCA |
| Anseranas semipalmata | (none) | AGGAAGAGATGCCATCTTCAAAGAGTTCCA |
| Apteryx australis | (none) | AGGGAGAGACGCCATCTACAAGGAGTTCCA |
| Aramus guarauna | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTTCA |
| Ardea herodias | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Arenaria interpres | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCCA |
| Aythya americana | (none) | AGGCAGAGATGCCATCTTCAAGGAGTTCCA |
| Balaeniceps rex | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Batrachostomus septimus | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Biziura lobata | (none) | AGGAAGAGATGCCATCTTCAAGGAGTTCCA |
| Bombycilla garrulus | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCCA |
| Brachypteracias squamigera | (none) | AGGCAGGGATGCCGTCTTCAAAGAGTTCCA |
| Bucco macrodactylus | (none) | AGGCAGAGATGCCATCTTCAAGGAGTTTCA |
| Bucorvus abyssinicus | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Burhinus bistriatus | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Buteo jamaicensis | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCCA |
| Cacatua sulphurea | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCCA |
| Capito niger | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Caprimulgus longirostris | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCCA |
| Cariama cristata | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Casuarius casuarius | (none) | CGGCAGAGACGCCATCTGCAAGGAGTTCCA |
| Cathartes aura | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Centropus viridis | (none) | TGGAAGAGATGCTATCTTCAAAGAGTTCCA |
| Chalcopsitta cardinalis | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTTCA |
| Charadrius vociferus | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Chauna torquata | (none) | AGGAAGAGATGCCATCTTCAAAGAGTTCCA |
| Choriotis kori | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Ciconia ciconia | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Climacteris erythrops | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCTA |
| Coccyzus americanus | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCCA |
| Cochlearius cochlearius | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Colibri coruscans | (none) | AGGCAGAGATGCCATCTTCAAGGAATTCCA |
| Colinus cristatus | (none) | AGGAAGAGATGCCATCTTCAAAGAGTTCCA |
| Colius colius | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCCA |
| Columba livia | (none) | ?????????????????????????????? |
| Columbina passerina | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Coracias caudata | (none) | AGGCAGGGACGCCATCTTCAAAGAGTTCCA |
| Corvus corone | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Corythaeola cristata | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCCA |
| Coturnix coturnix | (none) | AGGAAGAGATGCCATCTTCAAAGAGTTCCA |
| Coua cristata | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Crax alector | (none) | AGGGAGAGATGCCATCTTCAAAGAGTTCCA |
| Crotophaga sulcirostris | (none) | AGGAAGAGACGCCATCTTCAAAGAGTTCCA |
| Crypturellus soui | (none) | CGGGCGAGACGCCATCTACAAGGAGTTCCA |
| Cuculus canorus | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCCA |
| Daptrius ater | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTTCA |
| Dendrocolaptes certhia | (none) | AGGCAGAGATGCCATCTTCAAGGAGTTCCA |
| Diomedea nigripes | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTTCA |
| Dromaius novaehollandiae | (none) | CGGCAGAGACGCCATCTACAAGGAGTTCCA |
| Dromas ardeola | (none) | ?????????????????????????????? |
| Dryocopus pileatus | (none) | ?????????????????????????????? |
| Eudocimus albus | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Eudromia elegans | (none) | AGGGCGGGACGCCATCTACAAGGAGTTCCA |
| Eudyptula minor | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Eupodotis ruficrista | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Eurostopodus macrotis | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCCA |
| Eurypyga helias | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCCA |
| Falco mexicanus | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTTCA |
| Fregata magnificens | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Fringilla montifringilla | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCCA |
| Galbula albirostris | (none) | AGGCAGAGATGCCATCTTCAAGGAGTTTCA |
| Gallus gallus | (none) | AGGAAGAGATGCCATCTTCAAAGAGTTCCA |
| Gampsonyx swainsonii | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCCA |
| Gavia immer | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Geococcyx californianus | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Geotrygon montana | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Grallaria varia | (none) | AGGCAGAGACGCCATCTTCAAGGAGTTCCA |
| Grus canadensis | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTTCA |
| Haematopus ostralegus | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Heliornis fulica | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCCA |
| Hemiprocne mystacea | (none) | AGGCAGAGATGCCATCTTCAAGGAGTTCCA |
| Herpetotheres cachinnans | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCCA |
| Himantornis haematopus | (none) | AGGCAGAGATGCCATCTTCAA{AG}GAGTT |
| Indicator maculatus | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Jacana jacana | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Larus marinus | (none) | AGGCAGAGACGCCAT??TGAAAGAGTTCCA |
| Leptosomus discolor | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCCA |
| Malacorhynchus membranaceus | (none) | AGGAAGAGATGCCATCTTCAAGGAGTTCCA |
| Malurus melanocephalus | (none) | AGGCAGAGATGCCATCTTCAAGGAGTTCCA |
| Megalaima virens | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Megapodius eremita | (none) | AGGAAGAGATGCCATCTTCAAAGAGTTCCA |
| Menura novaehollandiae | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Merops nubicus | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Mesitornis unicolor | (none) | AGGCAGAGATGCCATCTTCAAGGAGTTCCA |
| Micrastur semitorquatus | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCCA |
| Micropsitta finschii | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTTCA |
| Mionectes macconnelli | (none) | GGGCAGAGATGCCATCTTCAAGGAGTTCCA |
| Momotus momota | (none) | AGGCAGAGAC{AG}CCATCTTCAAGGAGTT |
| Monias benschi | (none) | AGGCAGAGATGCCATCCTCAAGGAGTTCCA |
| Morus bassanus | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCCA |
| Nothoprocta perdicaria | (none) | GGGGCGAGACGCCATCTACAAGGAGTTCCA |
| Numida meleagris | (none) | AGGAAGAGATGCCATCTTCAAAGAGTTCCA |
| Nyctibius bracteatus | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Nyctibius grandis | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Oceanites oceanicus | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Oceanodroma tethys | (none) | AGGCAGAGA{CT}GCCATCTTCAAAGAGTT |
| Opisthocomus hoazin | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Otidiphaps nobilis | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Oxyura jamaicensis | (none) | AGGAAGAGATGCCATCTTCAAAGAGTTCCA |
| Pandion haliaetus | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCCA |
| Passer montanus | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Pedionomus torquatus | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Pelecanoides urinatrix | (none) | AGGCAGAGATGCTATCTTCAAAGAGTTTCA |
| Pelecanus occidentalis | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Phaenicophaeus curvirostris | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCCA |
| Phaethon lepturus | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Phaethon rubricauda | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Phaethornis griseogularis | (none) | ?????????????????????????????? |
| Phalacrocorax carbo | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCCA |
| Pharomachrus auriceps | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Phegornis mitchellii | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Phodilus badius | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Phoenicopterus chilensis | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Phoeniculus purpureus | (none) | AGGCCGAGACGCCATCTTCAAAGAGTTCCA |
| Picathartes gymnocephalus | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Pipra coronata | (none) | AGGCAGAGACGCCATCTTCAAGGAGTTCCA |
| Pitta guajana | (none) | AGGCAGGGACGCCATCTTCAAGGAGTTCCA |
| Platycercus elegans | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTTCA |
| Ploceus cucullatus | (none) | AGGAAGAGACGCCATCTTCAAAGAGTTCCA |
| Podargus strigoides | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Podiceps auritus | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Psittacula alexandri | (none) | AGGCAGAGA{CT}GCCATCTTTAAAGAGTT |
| Psittacus erithacus | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Psophia crepitans | (none) | AGGCAGAGATGCCATCTTCAAGGAGTTCCA |
| Pterocles namaqua | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCCA |
| Puffinus griseus | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTTCA |
| Rallus limicola | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCCA |
| Regulus calendula | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCCA |
| Rhea americana | (none) | AGGGAGAGACGCCATCTACAAGGAGTTCCA |
| Rhynochetos jubatus | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCCA |
| Rollulus rouloul | (none) | AAGAAGAGATGCCATCTTCAAAGAGTTCCA |
| Rostratula benghalensis | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Sagittarius serpentarius | (none) | AGGCAGAGAT{CG}CCATCTTCAAAGAGTT |
| Sapayoa aenigma | (none) | AGGCAGGGATGCCATCTTCAAGGAGTTCCA |
| Sarcoramphus papa | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Sarothrura elegans | (none) | AGGCAGAGATGCCATCTTCAAAGAATTTCA |
| Scopus umbretta | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Scytalopus magellanicus | (none) | AGGCAGAGATGCCATCTTCAAGGAGTTCCA |
| Smithornis rufolateralis | (none) | AGGCAGGGACGCCATCTTCAAGGAGTTCCA |
| Speotyto cunicularia | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Steatornis caripensis | (none) | AGGCAGGGACGCCATCTTCAAGGAGTTCCA |
| Streptoprocne zonaris | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCCA |
| Strix occidentalis | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Struthio camelus | (none) | AGGGAGAGACGCCATCTACAAGGAGTTCCA |
| Sylvia nana | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Syrrhaptes paradoxus | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Tauraco erythrolophus | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Thamnophilus nigrocinereus | (none) | AGGCAGAGATGCCATCTTCAAGGAGTTCCA |
| Thinocorus orbignyianus | (none) | ?????????????????????????????? |
| Tinamus guttatus | (none) | AGGGCGAGACGCCATCTACAAGGAGTTCCA |
| Tockus camurus | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Todus angustirostris | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCCA |
| Treron vernans | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Trogon personatus | (none) | AGGCAGAGACGCCATCTTCAAGGAGTTCCA |
| Turdus falklandii | (none) | AGGCAGAGATGCCATCTTCAAAGAGTTCCA |
| Turnix sylvatica | (none) | GGGCAGGGATGCCATCTTCAAGGAGTTCCA |
| Tyrannus tyrannus | (none) | AGGCAGAGACGCCATCTTCAAGGAGTTCCA |
| Tyto alba | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Upupa epops | (none) | ?????????????????????????????? |
| Urocolius indicus | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
| Vidua chalybeata | (none) | AGGCAGAGACGCCATCTTCAAAGAGTTCCA |
Columns
None of the columns has a description.
