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Citation
Taxa
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Trees
Analyses
Matrix 3239 of Study 2108
Citation title: "A Phylogenomic study of birds reveals their evolutionary history".
This study was previously identified under the legacy study ID S2079
(Status: Published).
Matrices
Title: IRF2
Description: Legacy TreeBASE Matrix ID = M3904
Rows
| Taxon Label | Row Segments | Characters 1?–30 |
|---|---|---|
| Alligator mississippiensis | (none) | GTACTGGAGC-TCTCCTTT-CTTATGGCCA |
| Gavialis gangeticus | (none) | GTACTGGAGC-TCTCCTTT-CTGATGGCCA |
| Acanthisitta chloris | (none) | GTATTGGAAC-TGTCTTTC--TGCAGGACA |
| Aegotheles insignis | (none) | GTATTGGAAC-TCTCT------GCGGAACA |
| Aerodramus vanikorensis | (none) | GTATTGGAAC-TCTCT------GCAGCACA |
| Alcedo leucogaster | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGA-T |
| Alectura lathami | (none) | GTATTGGAAC---TCTTTT--TGCAGGTCA |
| Alisterus scapularis | (none) | ?????????????????????????????? |
| Anas platyrhynchos | (none) | GTATTGGGAC-TCTCTTTT--TGCAGGACA |
| Anhinga anhinga | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Anser erythropus | (none) | GTATTGGGAC-TCTCTTTT--TGCAGGACA |
| Anseranas semipalmata | (none) | GTATTGGAAC-TTTCTTTT--TGCAGGACA |
| Apteryx australis | (none) | GTCTCGGAAC---TCTGTT--TTCAGGACA |
| Aramus guarauna | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Ardea herodias | (none) | GTATTGGAAC-TCTCTTTT--TGCAGGACA |
| Arenaria interpres | (none) | GTATTGGAAC-TC-CTTTC--TGCAGGACA |
| Aythya americana | (none) | GTATTGGGAC-TCTCTTTT--TGCAGGACA |
| Balaeniceps rex | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Batrachostomus septimus | (none) | ?????????????????????????????? |
| Biziura lobata | (none) | GTACTGGGCC-TCTCTTTT--TGCAGGACA |
| Bombycilla garrulus | (none) | GTATTGGAAC-TCTCTTTT--TGCAGGACA |
| Brachypteracias squamigera | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Bucco macrodactylus | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Bucorvus abyssinicus | (none) | GTATTGGATC-TGTCTTTC--TGCAGGACA |
| Burhinus bistriatus | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Buteo jamaicensis | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Cacatua sulphurea | (none) | GTATTGGAAC-CCTCTTTC--TGCAGGACA |
| Capito niger | (none) | GTATCAGAAT-TGTCTTCC--AACAGGACA |
| Caprimulgus longirostris | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Cariama cristata | (none) | GATTGGCAAC-TCTCTTTC--TTCAGGACA |
| Casuarius casuarius | (none) | ?????GGAAC---TCTGTT--TTCAGGACA |
| Cathartes aura | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Centropus viridis | (none) | GTACTGGAAC---TCTTTC--TGCAGGACA |
| Chalcopsitta cardinalis | (none) | GTATTGGAAC-CCTCTTTC--TGCAGGACA |
| Charadrius vociferus | (none) | GTATTGGAAC-TCTCCTAC--TGCAGGATA |
| Chauna torquata | (none) | GTATTGGAAC-ACTCTTTT--TGCAGGACA |
| Choriotis kori | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Ciconia ciconia | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Climacteris erythrops | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Coccyzus americanus | (none) | ?????????????????TC--TGTGGGATG |
| Cochlearius cochlearius | (none) | GTATTGGACC-TCTCTTTC--TGCAGGACA |
| Colibri coruscans | (none) | GTATTGGAAC-TCTCTCA----GCAGGACA |
| Colinus cristatus | (none) | GTATCGAAAC-TTTCTTTT--TGCAGGACA |
| Colius colius | (none) | GTATTGGAAC-TCCCTTTC--AGCAGCACA |
| Columba livia | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Columbina passerina | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Coracias caudata | (none) | GTATTGGAAACTCTCTTTC--TGCAGGACA |
| Corvus corone | (none) | GTATTAGAAC-TCTCTCTT--TGCAGGACA |
| Corythaeola cristata | (none) | GTATTGGAAC-CCTTTTTC--TGCAGGACA |
| Coturnix coturnix | (none) | GTATTGGAAC-TCTCTTTT--TGCAGGACA |
| Coua cristata | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Crax alector | (none) | GTATTGGAAC-TCTCTTTT--TGCTGAACA |
| Crotophaga sulcirostris | (none) | GTATTGGAAC-TCTTTTTC--TGCAGGACA |
| Crypturellus soui | (none) | GTATCAGAAC-TTTCTGTT--TTCAGGACA |
| Cuculus canorus | (none) | GTATTGGAACACTTTTTTC--TGCAGGACA |
| Daptrius ater | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Dendrocolaptes certhia | (none) | GTATCG-AAC-CCTTTTTC--TGCAGGACA |
| Diomedea nigripes | (none) | GTATTGGAAC-ACTCTTTC--TGCAGGACA |
| Dromaius novaehollandiae | (none) | GTATTGGAAC---TCTGTT--TTCAGGACA |
| Dromas ardeola | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Dryocopus pileatus | (none) | GTATTGGA-C-TATCTTCC--AACAGGACA |
| Eudocimus albus | (none) | GTATTGGAAC-TCTTTTTC--TGCAGGACA |
| Eudromia elegans | (none) | GTATCAGAAC-TTTCTGTT--TTCAGGACA |
| Eudyptula minor | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Eupodotis ruficrista | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Eurostopodus macrotis | (none) | GTATTGGAAC---TCTTTC--TGCAGGGCA |
| Eurypyga helias | (none) | GTACTGGAAC-TCTCTTTC--TGCAGGACA |
| Falco mexicanus | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Fregata magnificens | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Fringilla montifringilla | (none) | GTATTGGAAC-TCTCTTTT--TACAGGACA |
| Galbula albirostris | (none) | GTATTGGAAC-TCTTTCTT----CAGGAGA |
| Gallus gallus | (none) | GTATTGGAAC-TCTCTTTT--TGCAGGACA |
| Gampsonyx swainsonii | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Gavia immer | (none) | GTATTGGAAC-TCTCTTTC--TACAGGACA |
| Geococcyx californianus | (none) | GTATTGGAAC-TCTTCTTC--TGATAGACA |
| Geotrygon montana | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Grallaria varia | (none) | GTATCA-AAC-TCTTTTTC--TGCAGGACA |
| Grus canadensis | (none) | GTATTGGAAC-TTTCTTGC--TGCAGGACA |
| Haematopus ostralegus | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Heliornis fulica | (none) | ????TGGA---CCTCTTTC--TGCAGGAGA |
| Hemiprocne mystacea | (none) | GTATTGGAAC-TCTCTTTC--TGCAGCACA |
| Herpetotheres cachinnans | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Himantornis haematopus | (none) | GTATTGGAAC-GCTCTTTC--TGCAGGACA |
| Indicator maculatus | (none) | ?????????????????????????????? |
| Jacana jacana | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Larus marinus | (none) | GTATTGGAAC-TTTCTTTC--TGCAGTATA |
| Leptosomus discolor | (none) | GTATTGGAAC-TGTCTTTC--TGCAGGACA |
| Malacorhynchus membranaceus | (none) | GTATTGGGAC-TCTCTTT----GCAGGACA |
| Malurus melanocephalus | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Megalaima virens | (none) | ?????????C-CATCTTCC--ATCAGGACC |
| Megapodius eremita | (none) | GTATTGGAAC---TCTTTT--TGCAGGTCA |
| Menura novaehollandiae | (none) | GTATTGGAAC-TCTATTTC--TGCAGGACA |
| Merops nubicus | (none) | GTATTGGATC-TCTCTTTC--TGCAGGACA |
| Mesitornis unicolor | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACT |
| Micrastur semitorquatus | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Micropsitta finschii | (none) | GTATTGGAAC-CCTCTTTC--TGCAGGACA |
| Mionectes macconnelli | (none) | GTATCG-AAC-TCATTTTC--TGCAGGACA |
| Momotus momota | (none) | GTATTGGATC-TCTCTTTC--TGCAGGACA |
| Monias benschi | (none) | GTATTGGAAC-TCTCTTTC--TGCGGGACT |
| Morus bassanus | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Nothoprocta perdicaria | (none) | GTATCAGAAC-TTTCTGTT--TTCAGGACA |
| Numida meleagris | (none) | GTATTGGAAC-TCTCTTTT--TGCAGGACA |
| Nyctibius bracteatus | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGAAA |
| Nyctibius grandis | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGAAA |
| Oceanites oceanicus | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Oceanodroma tethys | (none) | GTATTGGAA--?CTCTTTC--TGCAGAGCA |
| Opisthocomus hoazin | (none) | GTATTGGAAC-TCTCT------GCAGGACA |
| Otidiphaps nobilis | (none) | GTACTGGAAC-TCTCTTTC--TGCAGGACA |
| Oxyura jamaicensis | (none) | GTATTGGGAC-TCTCTTTT--TGCAGGACA |
| Pandion haliaetus | (none) | GTATTGGAAC-TCTCTTTC--TGCATGATA |
| Passer montanus | (none) | GTATTGGCAC-TCTCTTTT--TGCAGGACA |
| Pedionomus torquatus | (none) | GTATTGGAAT-TCTCTTCC--TGCAGGACA |
| Pelecanoides urinatrix | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Pelecanus occidentalis | (none) | GTATTGGAAC-TGTCTTTC--TGCAGGACA |
| Phaenicophaeus curvirostris | (none) | ?????????????????????????????? |
| Phaethon lepturus | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Phaethon rubricauda | (none) | ???????????T?TCTTTC--TGCAGGACA |
| Phaethornis griseogularis | (none) | ????TGGA-C-TCTCTCTC--AGCAGGACA |
| Phalacrocorax carbo | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Pharomachrus auriceps | (none) | GTATTGGAAC-TCTTTTTC--TGCAGGATG |
| Phegornis mitchellii | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGATA |
| Phodilus badius | (none) | GTATTAGAAC-TCTTTTTC--TGTAGGACA |
| Phoenicopterus chilensis | (none) | GTATTTGAAC-TCTCTTTC--TGCAGGACA |
| Phoeniculus purpureus | (none) | ?????????????????????????????? |
| Picathartes gymnocephalus | (none) | GTATTGGAAC-TCTCTTTT--TGCAGGACA |
| Pipra coronata | (none) | GTATCG-AAC-TCATTTTC--TGCAGGACA |
| Pitta guajana | (none) | GTATTG-AAC-TCTTTTTT----------- |
| Platycercus elegans | (none) | GTATTGAAAC-CCTCTTTC--TGCAGGACA |
| Ploceus cucullatus | (none) | GTATTGGAAC-TCTCTTTT--TGCAGGACA |
| Podargus strigoides | (none) | ?????????????????????????????? |
| Podiceps auritus | (none) | GTATTTGAAC-TCTCATTC--TGCAGGACA |
| Psittacula alexandri | (none) | GTATTGGAAC-CCTCTTTC--TGCAGGACA |
| Psittacus erithacus | (none) | GTATTGGAAC-CCTCTCTC--TGCAGGACA |
| Psophia crepitans | (none) | GTATTGGAAC-TCGCTCTC--TGCAGGACA |
| Pterocles namaqua | (none) | GTATGGGAAC-TGTCCTTC--TGCAGGACA |
| Puffinus griseus | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Rallus limicola | (none) | GTATTGGAAT-GCTCTTTC--TGCAGGACA |
| Regulus calendula | (none) | GTATTGAAAC-TCTCATTT--TGGAGGACA |
| Rhea americana | (none) | GTATTGGAAC-TCTCTGTT--TTCAGGACA |
| Rhynochetos jubatus | (none) | GTACTGGAAC-TCTCTTCC--TGCAGGACA |
| Rollulus rouloul | (none) | GTATTGGAAC-TCTCTTTT--TCCAGGACA |
| Rostratula benghalensis | (none) | ?????????????????????????????? |
| Sagittarius serpentarius | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Sapayoa aenigma | (none) | GTATTG-AAC-TCTTTTTC--TGCAGGACA |
| Sarcoramphus papa | (none) | GTATTGGAAC-TCTCTTTC--TGCCGGACA |
| Sarothrura elegans | (none) | GTATTGGAAC-GCTCTTTC--TGTGAGACA |
| Scopus umbretta | (none) | GTATTGGAAC-TCTTTTTC--TGCAGGACA |
| Scytalopus magellanicus | (none) | GTATTGG-AC-TCTTTTTC--TGCAGCACA |
| Smithornis rufolateralis | (none) | GTACTGGAAC-TCTTTTTC--TGCAGGACA |
| Speotyto cunicularia | (none) | GTATTGGAA---CTC-TCC--TGTAGGACA |
| Steatornis caripensis | (none) | GTATTGGAAC-TCTCTTTC--TGGAGGACA |
| Streptoprocne zonaris | (none) | GTATTGGAAC-TCTCTTTC--TGCAGCACA |
| Strix occidentalis | (none) | GTATTGGAA---CTC-TCC--TGTAGGACA |
| Struthio camelus | (none) | GTATCAGAAC---TTTGTT--TTCAGGGCA |
| Sylvia nana | (none) | GTATTGGAAC-TCTCTTTT-TTGCAGGATG |
| Syrrhaptes paradoxus | (none) | GTATTGGAAC-TGTCCTTC--TGCAGGACA |
| Tauraco erythrolophus | (none) | GTATTGGAAC-TCTCTTTC--TGCAGGACA |
| Thamnophilus nigrocinereus | (none) | GTATTG-AAC-TCTTTTTC--TGCAGGACA |
| Thinocorus orbignyianus | (none) | GTATTGGAAC-TCTCTTCC--TACAGGACA |
| Tinamus guttatus | (none) | GTATCAGAAC-TTTCTGTT--TTAAGGACA |
| Tockus camurus | (none) | GTATTGGATC-TGTCTTTC--TGCAGGACA |
| Todus angustirostris | (none) | GTATTGGA-CATCTCTTTC--TGCAGGACA |
| Treron vernans | (none) | GTATTGGAAC---TCTTTC--TGCAGGACA |
| Trogon personatus | (none) | GTATTGGAAC-TCTTTTTTTCTGCAGGGTG |
| Turdus falklandii | (none) | GTAATGGAAC-TCTCTTTT--TGCAGAACA |
| Turnix sylvatica | (none) | GTATTGGAAT-ACTCTTTC--TGCAGGACA |
| Tyrannus tyrannus | (none) | ?????G-AAC-TCATTTTC--TGCAGGACA |
| Tyto alba | (none) | GTATTGGAAC-TCTTTTTC--TGTAAGACA |
| Upupa epops | (none) | GTACTGA--C-TCGCTGTC--TGCAGGACA |
| Urocolius indicus | (none) | GTATTGGAAC-TCCCTTTC--AGCAGCACA |
| Vidua chalybeata | (none) | GTATTGGAAC-TCTCTTTT--TGCAGGACA |
Columns
None of the columns has a description.
