Matrix 45949 of Study 22736
Matrices
Title: Murinae RAxML Alignment
Description: Concatenated Matrix of CYTB, GHR, IRBP, BRCA1, RAG1, ACP5, and FGB7 used in RAxML reconstruction (converted to .nex)
Rows
Taxon Label | Row Segments | Characters 1?–30 |
---|---|---|
Hapalomys delacouri R5237 | (none) | ATGACAAACATCCGAAAATCACACCCACTA |
Crateromys australis | (none) | ATGACAATCATCCGAAAAACCCACCCACTA |
Batomys hamiguitan | (none) | ATGACAAACATCCGAAAAACCCACCCATTA |
Batomys salomonseni | (none) | ATGACAAACATCCGAAAAACCCACCCATTA |
Crateromys heaneyi | (none) | ATGACAAATATCCGAAAAACCCACCCTCTA |
Abditomys latidens | (none) | ATGACAAACATTCGAAAAACTCACCCCCTA |
Chrotomys sibuyanensis | (none) | ATGACAAACATCCGAAAAACACACCCCCTT |
Apomys gracilirostris | (none) | ATGACAAACATCCGAAAAACACACCCCCTC |
Lophiomys imhausi | (none) | ATGAAAATTATACGAAAATCACACCCACTT |
Carpomys melanurus | (none) | ATGACAAACATCCGAAAAATTCACCCATTA |
Carpomys phaeurus | (none) | ATGACAAACATCCGAAAAATTCACCCATTA |
Musseromys gulantang | (none) | ATGACAAACATCCGAAAAACTCACCCACTA |
Musseromys inopinatus | (none) | ATGACAAACATCCGAAAAACCCACCCACTA |
Musseromys anacuao | (none) | ATGACAAACATCCGAAAAACTCACCCATTA |
Musseromys beneficus | (none) | ATGACAAACATCCGAAAAACTCACCCATTA |
Crunomys melanius | (none) | ATGACAAACATCCGAAAATCCCACCCTCTA |
Crunomys suncoides | (none) | ATGACAAACATCCGAAAATCCCACCCTCTA |
Bullimus gamay | (none) | ATGACAAACATTCGAAAGTCCCATCCCCTG |
Bullimus bagobus | (none) | ATGACAAACATTCGAAAATCTCATCCCCTA |
Bullimus luzonicus | (none) | ATGACAAACATTCGAAAATCTCATCCCCTA |
Rattus everetti | (none) | ATGACAAACATCCGAAAATCTCACCCTCTA |
Tarsomys apoensis | (none) | ATGACAAACATCCGAAAATCTCACCCTCTG |
Limnomys bryophilus | (none) | ATGACAAACATCCGAAAATCTCACCCCTTA |
Limnomys sibuanus | (none) | ATGACAAACATTCGAAAATATCATCCCCTA |
Rhynchomys banahao | (none) | ATGACAAACATCCGAAAAACACATCCTCTT |
Rhynchomys isarogensis | (none) | ATGACAAACATCCGAAAAACACATCCTCTT |
Rhynchomys soricoides | (none) | ATGACAAACATCCGAAAAACACATCCTCTT |
Rhynchomys tapulao | (none) | ATGACAAACATCCGAAAAACACATCCTCTT |
Archboldomys luzonensis | (none) | ATGACAAACATCCGAAAAACACATCCTCTT |
Archboldomys maximus | (none) | ------------------ACACACCCCCTT |
Apomys sierrae | (none) | ATGACAAACATCCGAAAAACGCACCCTCTC |
Apomys magnus | (none) | ATGACAAACATCCGAAAAACACACCCTCTC |
Apomys iridensis | (none) | ------------------------------ |
Apomys zambalensis | (none) | ATGACAAACATCCGAAAAACGCACCCTCTC |
Apomys aurorae | (none) | ATGACAAACATCCGAAAAACGCACCCCCTC |
Apomys minganensis | (none) | ------------------------------ |
Apomys abrae | (none) | ---------------------CATCCTCTT |
Apomys datae | (none) | ATGACAAATATCCGAAAAACACACCCTCTT |
Apomys brownorum | (none) | ATGACAAACATCCGAAAAACACACCCCCTC |
Apomys lubangensis | (none) | ------------------------------ |
Apomys sacobianus | (none) | ATGACAAACATCCGAAAAACACACCCCCTC |
Apomys banahao | (none) | ATGACAAACATCCGAAAAACACATCCCCTC |
Apomys musculus | (none) | ATGACAAACATCCGAAAGACACATCCCCTT |
Apomys microdon | (none) | ATGACAAACATCCGAAAAACACATCCACTT |
Soricomys montanus | (none) | ATGACAAACATCCGAAAAGCACATCCCCTA |
Soricomys musseri | (none) | ATGACAAACATCCGAAAAACCCACCCTCTC |
Soricomys leonardocoi | (none) | ATGACAAACATCCGAAAAACACATCCCCTT |
Soricomys kalinga | (none) | ATGACAAACATCCGAAAAACACACCCTCTC |
Chrotomys silaceus | (none) | ATGACAAACATCCGAAAAACACACCCCCTT |
Chrotomys gonzalesi | (none) | ATGACAAACATCCGAAAAACACACCCCCTT |
Chrotomys mindorensis | (none) | ATGACAAACATCCGAAAAACACACCCCCTT |
Chrotomys whiteheadi | (none) | ATGACAAACATCCGAAAAACACACCCCCTT |
Phloeomys cumingi | (none) | ATGACAAACATCCGAAAAACCCACCCACTA |
Phloeomys pallidus | (none) | ATGACATACATCCGAAAAACTCACCCACTA |
Crateromys schadenbergi | (none) | ATGACAAACATCCGAAAAACCCATCCCCTA |
Batomys granti | (none) | ATGACAAACATCCGAAAAACCCACCCACTA |
Batomys uragon | (none) | ATGACAAACATCCGAAAAACCCACCCACTG |
Uranomys ruddi | (none) | ---------------AAATCCCACCCTTTA |
Gerbillus gerbillus | (none) | ATG{AT}CAAACATT{CT}GAAAAATTCAC |
Meriones shawi | (none) | ------------------------------ |
Mylomys dybowskii | (none) | ATGACAAACATCCGAAAAACTCACCCACTA |
Micaelamys namaquensis | (none) | ATGATAAACATCCGAAAAACCCATCCCCTA |
Hapalomys delacouri ZIN98922 | (none) | ------AATATCCGAAAATCACATCCACTA |
Oenomys hypoxanthus | (none) | ATGACAAACATCCGAAAAACTCACCCCTTA |
Micromys minutus | (none) | ATGACAATCATCCGAAAAACCCACCCCTTA |
Lemniscomys barbarus | (none) | ATGACAAACATTCGAAAAACTCATCCTCTA |
Mus pahari | (none) | ATGACAAACATACGAAAAACACATCCACTA |
Dephomys defua | (none) | ------------------------------ |
Chiromyscus chiropus | (none) | ------------------------CCCCTA |
Maxomys moi | (none) | ATGACAGATATACGAAAAACCCATCCCCTA |
Maxomys hellwaldii | (none) | ATGACAAACATCCGAAAATCCCACCCTCTA |
Maxomys dollmani | (none) | ATGACAAACATCCGAAAATCCCACCCTCTA |
Maxomys bartelsii | (none) | ------------------------------ |
Maxomys whiteheadi | (none) | ATGACAAACATCCGAAAATCCCACCCCTTA |
Maxomys hylomyoides | (none) | ------------------------------ |
Maxomys musschenbroekii | (none) | ATGACAAACATTCGAAAATCCCACCCCCTA |
Crunomys celebensis | (none) | ATGACAAATATCCGCAAATCCCATCCCTTA |
Maxomys panglima | (none) | ATGACAAACATCCGAAAAACCCATCCCCTA |
Maxomys cf hellwaldii | (none) | ------------------------------ |
Maxomys surifer | (none) | ---------ATCCGAAAAACCCATCCCTTA |
Maxomys pagensis | (none) | ------------------------------ |
Maxomys rajah | (none) | ------------------------------ |
Waiomys mamasae | (none) | ATGACAAACACCCGAAAAACCCATCCTCTA |
Niviventer cremoriventer | (none) | ------------------------------ |
Sommeromys macrorhinos | (none) | ATGACAAACATACGTAAAACCCACCCCCTA |
Niviventer excelsior | (none) | ATGACAAACATCCGAAAAACCCACCCCCTC |
Niviventer culturatus | (none) | ATGACAAACATCCGAAAAACTCATCCCTTA |
Niviventer confucianus | (none) | ATGACAAATATCCGAAAAACCCATCCCCTT |
Paruromys dominator | (none) | ATGACAAACATTCGAAAATCTCACCCCTTA |
Saxatilomys paulinae | (none) | ATGACAAACATCCGAAAAACCCACCCTTTA |
Leopoldamys sabanus | (none) | ------------------------------ |
Leopoldamys edwardsi | (none) | ------------------ACCCACCCTCTA |
Leopoldamys neilli | (none) | ------------CGAAAAACTCACCCCCTC |
Dacnomys millardi | (none) | ------------------------------ |
Paucidentomys vermidax | (none) | ------------------------------ |
Tateomys rhinogradoides | (none) | ---------------------CACCCTCTA |
Echiothrix centrosa | (none) | ATGACAAACATCCGAAAAACCCACCCACTA |
Melasmothrix naso | (none) | ATGACAAACATCCGAAAAGCCCACCCCTTA |
Hyorhinomys stuempkei | (none) | ATGACAAACACCCGAAAAACCCACCCCCTG |
Tateomys macrocercus | (none) | ---------------------CACCCACTA |
Berylmys berdmorei | (none) | ------------CGAAAATCCCACCCTCTA |
Berylmys bowersi | (none) | ATGACAAACATCCGAAAATCCCACCCTCTA |
Srilankamys ohiensis | (none) | ATGACAAACATCCGAAAATCCCACCCCCTC |
Rattus norvegicus | (none) | ATGACAAACATCCGAAAATCTCACCCCCTA |
Bandicota bengalensis | (none) | ATGACAAACATTCGAAAATCCCACCCTCTA |
Bandicota savilei | (none) | ------------CGAAAATCCCACCCTCTA |
Sundamys muelleri | (none) | ------------------------------ |
Diplothrix legata | (none) | ATGGCAAACATTCGAAAATCCCACCCTCTA |
Rattus praetor | (none) | ATGACAAACATTCGAAAATCCCACCCTCTG |
Rattus villosissimus | (none) | ATGACAAACATTCGAAAATCTCACCCTCTA |
Arvicanthis neumanni | (none) | ATGACAAACATCCGAAAAACACACCCCCTA |
Dasymys incomtus | (none) | ATGACAAACATCCGAAAGACCCACCCCTTA |
Mus musculus | (none) | ATGACAAACATACGAAAAACACACCCATTA |
Mus spicilegus | (none) | ---ACAAACATACGAAAAACACATCCATTA |
Mus caroli | (none) | ATGACAAACATCCGAAAAACACATCCACTA |
Mus cookii | (none) | ATGACAAACATCCGAAAAACACACCCATTA |
Stochomys longicaudatus | (none) | ATGACAAACATACGAAAAACCCACCCCCTA |
Hybomys univittatus | (none) | ATGACAAACATCCGAAAAACACACCCTCTC |
Golunda elliotti | (none) | ATGACAAACATCCGAAAAACCCACCCACTA |
Grammomys ibeanus | (none) | ATGACAAACACCCGAAAAACCCACCCCTTA |
Parotomys brantsii | (none) | ATGACAAACATCCGAAAAACTCACCCCCTT |
Otomys angoniensis | (none) | ATGACAAACATCCGAAAAACCCACCCCCTA |
Otomys denti | (none) | ATGACAAACATCCGAAAAACCCACCCTCTA |
Chiropodomys gliroides | (none) | ------------------------------ |
Malacomys longipes | (none) | ATGACAAACATACGAAAATCTCACCCACTA |
Zyzomys argurus | (none) | ATGACAAACATTCGAAAAACACATCCACTA |
Apodemus latronum | (none) | ------AACATCCGAAAAACCCATCCACTT |
Apodemus semotus | (none) | ATGACAAATATCCGAAAAACACACCCACTT |
Apodemus speciosus | (none) | ATGACAAACATCCGAAAAACACATCCATTA |
Mammelomys lanosus | (none) | ATGACAAACATCCGAAAATCACATCCGTTA |
Apodemus mystacinus | (none) | ATGACAAACATACGTAAAACACATCCATTA |
Chiruromys vates | (none) | ATGATTCACATTCGAAAAACACACCCCCTA |
Hyomys goliath | (none) | ATGACAAACATCCGAAAAACACACCCACTA |
Macruromys major | (none) | ATGACACACATCCGAAAAACCCACCCTTTA |
Apodemus flavicollis | (none) | ATGACAAACATTCGAAAAACACACCCCCTA |
Apodemus sylvaticus | (none) | ATGACAAACATTCGAAAAACACACCCACTA |
Heimyscus fumosus | (none) | ATGACAAACATCCGAAAATCTCACCCATTA |
Mallomys rothschildi | (none) | ATGAAAAACATTCGAAAAACACACCCACTA |
Apodemus agrarius | (none) | ATGACAAACATCCGAAAAACTCACCCCCTA |
Hylomyscus parvus | (none) | ATGACAAACATCCGAAAAACACACCCATTA |
Praomys degraaffi | (none) | ATGACAAACATCCG?AAAACCCACCCACTA |
Praomys jacksoni | (none) | ATGACAAACATCCGAAAAACCCACCCACTT |
Zelotomys hildegardeae | (none) | ATGACAAACATCCGAAAAACCCACCCACTA |
Praomys misonnei | (none) | ------------------ACCCACCCACTA |
Praomys tullbergi | (none) | ATGACAAACATCCGAAAAACCCACCCACTA |
Pogonomys macrourus | (none) | ATGACAAACATTCGAAAAACCCACCCTTTA |
Mastacomys fuscus | (none) | ATGACAAACATACGAAAAACACACCCCCTA |
Pseudomys australis | (none) | ATGACAAACATACGAAAAACACATCCCTTG |
Lorentzimys nouhuysi | (none) | ATGATAAACATCCGAAAAACACACCCCCTA |
Leporillus conditor | (none) | ------------------ACCCACCCACTC |
Uromys caudimaculatus | (none) | ------------------------------ |
Paramelomys levipes | (none) | ------------------------------ |
Notomys fuscus | (none) | ATGACAAACATCCGAAAAACACATCCCTTA |
Pogonomys loriae | (none) | ATGACAAACATCCGAAAAACTCACCCCTTA |
Leggadina forresti | (none) | ATGACAAACATCCGAAAAACACACCCCTTA |
Conilurus penicillatus | (none) | ------------------------------ |
Pseudohydromys ellermani | (none) | ATGACAAACATCCGAAAAACACACCCCCTA |
Xeromys myoides | (none) | ATGACAAACATCCGAAAAACACATCCCCTA |
Leptomys elegans | (none) | ATGACAAACATTCGAAAAACACACCCCTTA |
Crossomys moncktoni | (none) | ATGACAAACATCCGAAAAACACACCCTTTA |
Hydromys chrysogaster | (none) | ATGACAAACATCCGAAAAACACACCCCCTA |
Parahydromys asper | (none) | ATGACAAACATCCGAAAAACACACCCCTTA |
Solomys salebrosus | (none) | ------------------------CCCCTA |
Melomys rufescens | (none) | ATGACAAACATTCGAAAAACACACCCCCTA |
Rattus exulans | (none) | ATGACAAACATTCGAAAATCTCATCCTCTA |
Rattus tanezumi | (none) | ATGACAAACATTCGAAAATCACACCCCCTA |
Apomys camiguinensis | (none) | ATGACAAACATCCGAAAAACACACCCTCTT |
Apomys hylocoetes | (none) | ATGACAAACATCCGAAAAACACATCCCCTT |
Apomys insignis | (none) | ATGACAAACATCCGAAAAACACATCCCCTT |
Tokudaia osimensis | (none) | ------------------------------ |
Vandeleuria oleracea | (none) | ------------------------------ |
Millardia kathleenae | (none) | ------------------------------ |
Anisomys imitator | (none) | ------------------------------ |
Pogonomys sylvestris | (none) | ------------------------------ |
Abeomelomys sevia | (none) | ------------------------------ |
Mesembriomys gouldii | (none) | ------------------------------ |
Paraleptomys sp | (none) | ------------------------------ |
Microhydromys richardsoni | (none) | ------------------------------ |
Myomyscus brockmani | (none) | ------------------------------ |
Mastomys erythroleucus | (none) | ------------------------------ |
Mastomys hildebrandtii | (none) | ------------------------------ |
Stenocephalomys albipes | (none) | ------------------------------ |
Colomys goslingi | (none) | ------------------------------ |
Hylomyscus stella | (none) | ------------------------------ |
Grammomys macmillani | (none) | ------------------------------ |
Grammomys dolichurus | (none) | ------------------------------ |
Margaretamys elegans | (none) | ------------------------------ |
Bunomys chrysocomus | (none) | ------------------------------ |
Rattus tiomanicus | (none) | ------------------------------ |
Rattus rattus | (none) | ------------------------------ |
Rattus verecundus | (none) | ------------------------------ |
Rattus leucopus | (none) | ------------------------------ |
Rattus novaguineae | (none) | ------------------------------ |
Otomys anchietae | (none) | ------------------------------ |
Lemniscomys striatus | (none) | ------------------------------ |
Rhabdomys pumilio | (none) | ------------------------------ |
Arvicanthis niloticus | (none) | ------------------------------ |
Gerbilliscus robustus | (none) | ------------------------------ |
Acomys ignitus | (none) | ------------------------------ |
Mus terricolor | (none) | ------------------------------ |
Mus booduga | (none) | ------------------------------ |
Mus cervicolor | (none) | ------------------------------ |
Rattus sordidus | (none) | ------------------------------ |
Rattus giluwensis | (none) | ------------------------------ |
Columns
None of the columns has a description.