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Matrix 48582 of Study 23531
Citation title: "Odontogenic Ameloblast-associated (ODAM) is Inactivated in Toothless/Enamelless Placental Mammals and Toothed Whales".
Study name: "Odontogenic Ameloblast-associated (ODAM) is Inactivated in Toothless/Enamelless Placental Mammals and Toothed Whales".
This study is part of submission 23531
(Status: Published).
Matrices
Title: Alignment of ODAM protein-coding exons
Description: RAxML analysis
Rows
| Taxon Label | Row Segments | Characters 1?–30 |
|---|---|---|
| Elephas maximus | (none) | ATGAAAGTAATAATTCTCCTTGGGCTCC-T |
| Loxodonta africana | (none) | ATGAAAGTAATAATTCTCCTTGGGCTCC-T |
| Mammut americanum | (none) | ATGAAAGTAATAATTCTCCTTGGGCTCC-T |
| Loxodonta cyclotis | (none) | ATGAAAGTAATAATTCTCCTTGGGCTCC-T |
| Mammuthus primigenius | (none) | ATGAAAGTAATAATTCTCCTTGGGCTCC-T |
| Palaeoloxodon antiquus | (none) | ATGAAAGTAATAATTCTCCTTGGGCTCC-T |
| Trichechus manatus | (none) | ATGAAAATAATAATTCTCCTTGGGCTCC-T |
| Procavia capensis | (none) | ATGAAAATAATCATTTTTCTTGGGCTCC-T |
| Orycteropus afer | (none) | ????????????????TTCTTGGGTTCC-T |
| Chrysochloris asiatica | (none) | ATGAAAATAATAATTCTTCTTGGACTCC-T |
| Echinops telfairi | (none) | ATGAAAATAATCATTCTTCTTGGGCTCC-T |
| Elephantulus edwardii | (none) | ATGAAGATATTAATTCTTCTTGGGCTTC-T |
| Cyclopes didactylus | (none) | ATGGAAATGATAATCCTTCTTAGACTCC-T |
| Tamandua tetradactyla | (none) | ATGAAAATGATAATTCTTCTTGGACTCCTT |
| Choloepus didactylus | (none) | ATGGAAATGATAATTCTTCTTGGGATCC-T |
| Choloepus hoffmanni | (none) | ATGGAAATGATAATTCTTCTTGGGATCC-T |
| Dasypus novemcinctus | (none) | ATGAAA---ATAATTCTTCTTGGGATCC-T |
| Tolypeutes matacus | (none) | ACGAAAATGATAATTCTCCTTGGGCTCC-T |
| Cabassous unicinctus | (none) | ATGAAAATGATAATTCTTCTTGGGCTCC-T |
| Chaetophractus vellerosus | (none) | ATGAAAATGATAATTCTTCTTGGGCTCC-T |
| Calyptophractus retusus | (none) | ATGAAAATGATAATTCTT---GGGCTCC-T |
| Chlamyphorus truncatus | (none) | ------------------------------ |
| Spermophilus tridecemlineatus | (none) | ATGAAAATTATAATTTTTCTTGGACTCT-T |
| Marmota marmota | (none) | ATGAAAATTATAATTTTTCTTGGACTCT-T |
| Octodon degus | (none) | ATGGAAATTATAATTTTTCTTGGGCTCC-T |
| Cavia porcellus | (none) | ATGAAAATTATAATTTTTCTTGGACTCC-T |
| Cavia aperea | (none) | ATGAAAATTATAATTTTTCTTGGACTCC-T |
| Chinchilla lanigera | (none) | ATGAAAATTATAATTTTCCTTGGACTCC-T |
| Fukomys damarensis | (none) | ATGAAAATTATCATTTTTCTTGGACTCC-T |
| Tympanoctomys barrerae | (none) | ATGAAAATTATAATTTTTCTTGGGCTCC-T |
| Octomys mimax | (none) | ATGAAAATTATAATTTTTCTTGGGCTCC-T |
| Heterocephalus glaber | (none) | ATGAAAATTATAATTTTTCTTGGACTCC-T |
| Dipodomys ordii | (none) | ATGAAAGCCCTAATTCTTCTTGGACTCC-T |
| Castor canadensis | (none) | ATGAAATTTTTAATTCTTCTTGGTCTCC-T |
| Jaculus jaculus | (none) | ATGAGACCCGTAATTCTTCTTGGGCTCT-T |
| Nannospalax galili | (none) | ATGAAAACTATAATTCTTCTTGGACTCC-T |
| Meriones unguiculatus | (none) | ATGAAAATCATAATTCTTCTTGGACTCA-T |
| Mesocricetus auratus | (none) | ATGAAATTTTTTATACTTCTTGGACTCA-T |
| Mus musculus | (none) | ATGAAAATTATAATTCTTCTTGGACTCA-T |
| Phodopus sungorus | (none) | ATGAAAATTTTAATTCTTCTTGGGCTCA-T |
| Cricetulus griseus | (none) | ATGAAAATTTTAATTCTTCTTGGACTCA-T |
| Ellobius lutescens | (none) | ATGAAAATTATAATTCTTCTTGGACTCC-T |
| Ellobius talpinus | (none) | ATGAAAATTATAATTCTTATTGGACTTC-T |
| Microtus agrestis | (none) | ATGAAAATTATAATTCTTCTTGGACTCC-T |
| Microtus ochrogaster | (none) | ATGAAAATTATAATTCTTCTTGGACTCC-T |
| Myodes glareolus | (none) | ATGAAAATTATAATTCTTCTTGGACTCC-T |
| Peromyscus maniculatus | (none) | ATGAAAATTATAATTCTTCTTGGACTCA-T |
| Mus caroli | (none) | ATGAAAATTATAATTCTTCTTGGACTCA-T |
| Mus pahari | (none) | ATGAAAATTATAATTCTTCTTGGACTCA-T |
| Rattus norvegicus | (none) | ATGAAAATTATAATTCTTCTTGGACTCA-T |
| Ochotona princeps | (none) | ATGAAAATTCTGGTTCTTCTTGGACTCT-T |
| Oryctolagus cuniculus | (none) | ATGAAAATTCTAGCTCTTCTTGGACTTC-T |
| Microcebus murinus | (none) | ATGAAAATTATAATTCTTCTTGGACTTC-T |
| Eulemur macaco | (none) | ATGAAAATTATAATTCTTCTTGGACTTC-T |
| Eulemur flavifrons | (none) | ATGAAAATTATAATTCTTCTTGGACTTC-T |
| Propithecus coquereli | (none) | ATGAAAATTATAATTCTTCTTGGACTTC-T |
| Otolemur garnettii | (none) | ATGAAAATTATAATTCTTCTTGGACTCC-T |
| Daubentonia madagascariensis | (none) | ATGAAAATTATAATTCTTCTTGGACTAC-T |
| Tarsius syrichta | (none) | ATGAGAATTATAATTCTTCTTGGGCTCC-T |
| Callithrix jacchus | (none) | ATGAAAATTATAATTCTTCTTGGATTCT-T |
| Aotus nancymaae | (none) | ATGAAAATTATAATTCTTCTTGGATTCT-T |
| Cebus capucinus | (none) | ATGAAAATTATAATTCTTCTTGGATTCT-T |
| Saimiri boliviensis | (none) | ATGAAAATTATAATTCTTCTTGGATTCT-T |
| Nasalis larvatus | (none) | ATGAAAATTATAATTCTTCTTGGATTCC-T |
| Cercocebus atys | (none) | ATGAAAATTATAATTCTTCTTGGATTCC-T |
| Papio anubis | (none) | ATGAAAATTATAATTCTTCTTGGATTCC-T |
| Macaca fascicularis | (none) | ATGAAAATTATAATTCTTCTTGGATTCC-T |
| Macaca mulatta | (none) | ATGAAAATTATAATTCTTCTTGGATTCC-T |
| Macaca nemestrina | (none) | ATGAAAATTATAATTCTTCTTGGATTCC-T |
| Mandrillus leucophaeus | (none) | ATGAAAATTATAATCCTTCTTGGATTCC-T |
| Colobus angolensis | (none) | ATGAAAATTATAATTCTTCTTGGATTCC-T |
| Rhinopithecus roxellana | (none) | ATGAAAATTATAATTCTTCTTGGATTCC-T |
| Piliocolobus tephrosceles | (none) | ATGAAAATTATAATTCTTCTTGGACTCC-T |
| Rhinopithecus bieti | (none) | ATGAAAATTATAATTCTTCTTGGATTCC-T |
| Chlorocebus sabaeus | (none) | ATGAAAATTATAATTCTTCTTGGATTCC-T |
| Homo sapiens | (none) | ATGAAAATTATAATTCTTCTTGGATTCC-T |
| Gorilla gorilla | (none) | ATGAAAATTATAATTCTTCTTGGATTCC-T |
| Pan paniscus | (none) | ATGAAAATTATAATTCTTCTTGGATTCC-T |
| Pan troglodytes | (none) | ATGAAAATTATAATTCTTCTTGGATTCC-T |
| Pongo abelii | (none) | ATGAAAATTATAATTCTTCTTGGATTCC-T |
| Nomascus leucogenys | (none) | ATGAAAATTATAATTCTTCTTGGATTCC-T |
| Galeopterus variegatus | (none) | ATGAAAATTATAATTCTTCTTGGATTCC-T |
| Tupaia belangeri | (none) | ATGAAAGTAGTAATTCTTCTCGGGCTAC-T |
| Condylura cristata | (none) | ATGAAAATTATAATTCTCTTGGGGCTCC-T |
| Sorex araneus | (none) | ATGAAAATTATAATTTTTCTTGGACTCC-T |
| Solenodon paradoxus | (none) | ATGCTCATTGTAATTCTTCTTGGGCTCT-T |
| Erinaceus europaeus | (none) | ATGAGAATTATAATTATTCTTGGGCTCA-T |
| Suncus murinus | (none) | ATGAGAATTATAATTTTTCTTGGACTCC-T |
| Rousettus aegyptiacus | (none) | ATGAAAACTATAATTCTTTTTGGGCTAG-T |
| Pteropus vampyrus | (none) | ATGAAAACTATAATTCTTTTTGGGCTAC-T |
| Eidolon helvum | (none) | ATGAAAACTATAATTCTTTTTGGGCTAC-T |
| Pteropus alecto | (none) | ATGAAAACTATAATTCTTTTTGGGCTAC-T |
| Megaderma lyra | (none) | ATGAAAACTATAATTATTTTCGGGCTAC-T |
| Rhinolophus ferrumequinum | (none) | ATGAAAACTATAATTCTTTTGGGGCTAC-T |
| Rhinolophus sinicus | (none) | ATGAAAACTGTAATTCTTTTGGGGCTAC-T |
| Hipposideros armiger | (none) | ATGAAAACCATAATTCTTTTGGGGCTAC-T |
| Eptesicus fuscus | (none) | ATGAAAACCATAATTCTTTTTGGGCTAC-T |
| Myotis brandtii | (none) | ATGAAAACCATAATTCTTTTTGGGCTAC-T |
| Myotis lucifugus | (none) | ATGAAAACCATAATTCTTTTTGGGCTAC-T |
| Myotis davidii | (none) | ATGAAAACCATAATTCTTTTTGGGCTAC-T |
| Miniopterus natalensis | (none) | ATGAAAACTATAATTCTTTTGGGGCTAC-T |
| Pteronotus parnellii | (none) | ATGAAAACGATAATTCTTTGGGGGCTTC-T |
| Panthera pardus | (none) | ATGAAAACTATAATTCTTCTTGGGCTTC-T |
| Panthera tigris | (none) | ATGAAAACTATAATTCTTCTTGGGCTTC-T |
| Panthera leo | (none) | ATGAAAACTATAATTCTTCTTGGGCTTC-T |
| Felis catus | (none) | ATGAAAACTATAATTCTTCTTGGGCTTC-T |
| Acinonyx jubatus | (none) | ATGAAAACTATAATTCTTCTTGGGCTTC-T |
| Hyaena hyaena | (none) | ATGAAAACTATAATTCTTCTTGGGCTAC-T |
| Lycaon pictus | (none) | ATGAAAACCATAATTCTTCTTGGGCTAC-T |
| Canis lupus | (none) | ATGAAAACCATAATTCTTCTTGGGCTAC-T |
| Ailuropoda melanoleuca | (none) | ATGAAAACTATAATTCTTCTTGGGCTAC-T |
| Ursus maritimus | (none) | ATGAAAACCATAATTCTTCTTGGGCTAC-T |
| Ailurus fulgens | (none) | ATGAAAACCATAATTCTTCTTGGGCTAC-T |
| Neovison vison | (none) | ATGAAGACCATAATTCTTCTTGGGCTGC-T |
| Mustela putorius | (none) | ATGAAGACTGTAATTCTTCTTGGGCTGC-T |
| Enhydra lutris | (none) | ATGAAAACCATAATTCTTCTTGGGCTGC-T |
| Arctocephalus gazella | (none) | ATGAGAACCATAATTCTTCTTGGGCTAC-T |
| Neomonachus schauinslandi | (none) | ATGAAAACCATAATTCTTCTTGGGCTAC-T |
| Leptonychotes weddellii | (none) | ATGAAAACCATAATTCTTCTTGGGCTAC-T |
| Odobenus rosmarus | (none) | ATGAAAACCATAATTCTTCTTGGGCTAC-T |
| Manis javanica | (none) | ATGATAATTATAACTCTTCTTGGGCTAC-T |
| Manis pentadactyla | (none) | ATGATAATTATAACTCTTCTTGGGCTAC-T |
| Camelus bactrianus | (none) | ATGAAAACTATAATTCTTCTTGGGATAC-T |
| Camelus ferus | (none) | ATGAAAACTATAATTCTTCTTGGGATAC-T |
| Camelus dromedarius | (none) | ATGAAAACTATAATTCTTCTTGGGATAC-T |
| Vicugna pacos | (none) | ATGAAAACTATAATTCTTCTTGGGATAC-T |
| Sus scrofa | (none) | ATGAAAACTATGATCCTTCTTGGGATAC-T |
| Bubalus bubalis | (none) | ATGAGAACTCTAATTCTTCTCGGCATAC-T |
| Bison bison | (none) | ATGAGAACTCTAATTCTTCTCGGCATAC-T |
| Bos taurus | (none) | ATGAGAACTCTAATTCTTCTCGGCATAC-T |
| Bos indicus | (none) | ATGAGAACTCTAATTCTTCTCGGCATAC-T |
| Bos mutus | (none) | ATGAGAACTCTAATTCTTCTCGGCATAC-T |
| Ammotragus lervia | (none) | ATGAGAACTCTAATTCTTCTCGGCATAC-T |
| Ovis aries | (none) | ATGAGAACTCTAATTCTTCTCAGCATAC-T |
| Capra hircus | (none) | ATGAGAACTCTAATTCTTCTCGGCATAC-T |
| Capra aegagrus | (none) | ATGAGAACTCTAATTCTTCTCGGCATAC-T |
| Pantholops hodgsonii | (none) | ATGAGAACTCTAATTCTTCTCGGTATAC-T |
| Capreolus capreolus | (none) | ATGAGAACTATAATTCTTCTCGGCATAC-T |
| Elaphurus davidianus | (none) | ATGAGAACTATAATTCTTCTCGGCCTAC-T |
| Odocoileus virginianus | (none) | ATGAGAACTATAATTCTTCTCAGCATAC-T |
| Cervus elaphus | (none) | ATGAGAACTATAATTCTTCTCGGCCTAC-T |
| Giraffa camelopardalis | (none) | ATGAGAACTATAATTCTTCTCGGCATCC-T |
| Okapia johnstoni | (none) | ATGAGAACTATAATTCTTCTCGGCATCC-T |
| Hippopotamus amphibius | (none) | ATGAAAACTATAATTCTTCTTGGGATAC-T |
| Choeropsis liberiensis | (none) | ATGAAAACTATAATTCTTCTTGGGATAC-T |
| Eschrichtius robustus | (none) | ATGAAAACTATAATTCTTCTTGGGATAC-T |
| Balaenoptera acutorostrata | (none) | ATGAAAACTATAATTCTTCTTGGGATAC-T |
| Balaenoptera bonaerensis | (none) | ATGAAAACTATAATTCTTCTTGGGATAC-T |
| Balaenoptera borealis | (none) | ATGAAAACTATAATTCTTCTTGGGATAC-T |
| Balaenoptera musculus | (none) | ATGAAAACTATAATTCTTCTTGGGATAC-T |
| Balaena mysticetus | (none) | ATGAAAACTATAATTCTTCTTGGGATAC-T |
| Eubalaena glacialis | (none) | ATGAAAACTATAATTCTTCTTGGGATAC-T |
| Physeter macrocephalus | (none) | ATGAAAACTATAATTCTTCTTGGAATAC-T |
| Delphinapterus leucas | (none) | ATGAAAACTATAATTCTTCTTGGGATAC-T |
| Phocoena phocoena | (none) | ATGAAAACTATAATTCTTCTTGGGATAC-T |
| Neophocaena asiaeorientalis | (none) | ATGAAAACTATAATTCTTCTTGGGATAC-T |
| Neophocaena phocaenoides | (none) | ATGAAAACTATAATTCTTCTTGGGATAC-T |
| Tursiops truncatus | (none) | ATGAAAACTATAATTCCTCTTGGGATAC-T |
| Orcinus orca | (none) | ATGAAAACTATAATTCTTCTTGGGATAC-T |
| Lipotes vexillifer | (none) | ATGAAAACTATAATTCTTCTTGGGATAC-T |
| Equus asinus | (none) | ATGAGAACTATAATTCTTCTTGTGCTAC-T |
| Equus caballus | (none) | ATGAGAACTATAATTCTTCTTGTGCTGC-T |
| Equus przewalskii | (none) | ATGAGAACTATAATTCTTCTTGTGCTGC-T |
| Dicerorhinus sumatrensis | (none) | ATGAGAACTATCATTCTTCTTGCGCTAC-T |
| Ceratotherium simum | (none) | ATGAGAACTATCATTCTTCTTGCGCTAC-T |
Columns
None of the columns has a description.
