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Matrix 18284 of Study 27048
Citation title: "Detection and characterization of quiescent infections of Neonectria ditissima in Brazilian commercial apple fruit".
Study name: "Detection and characterization of quiescent infections of Neonectria ditissima in Brazilian commercial apple fruit".
This study is part of submission 27048
(Status: Published).
Matrices
Title: ITS - all isolates
Rows
| Taxon Label | Row Segments | Characters 1?–30 |
|---|---|---|
| Phytophthora citrophthora pa3 AY228568 Cohen G1 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora pa34 AY228569 Cohen G1 | (none) | GTGTTGCTTGGCG-TTTTGCTG-------- |
| Phytophthora citrophthora pa55 AY228572 Cohen G1 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora pa67 AY228574 Cohen G1 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora pa68 AY228575 Cohen G1 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora pa96 AY228576 Cohen G1 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora pa110 AY228566 Cohen G1 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora pa65 AY228573 Cohen G2 | (none) | GTGTTGCTTGGCA-TTTTGCTG-------- |
| Phytophthora citrophthora P114 AY228577 Cohen G2 | (none) | GTGTTGCTTGGCA-TTCTGCTG-------- |
| Phytophthora citrophthora pa36 AY228570 Cohen G2 | (none) | GTGTTGCTTGGCA-TTTTGCTG-------- |
| Phytophthora citrophthora pa47 AY228571 Cohen G2 | (none) | GTGTTGCTTGGCA-TTTTGCTG-------- |
| Phytophthora citrophthora 435 AY228565 Cohen G2 | (none) | GTGTTGCTTGGCA-TTTTGCTG-------- |
| Phytophthora citrophthora pa29 AY228567 Cohen G1 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora 163 AY228564 Cohen G1 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora 3BO FJ874794 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora BO-01 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora BO-02 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora BO-03 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora BO-04 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora BO-05 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora BO-06 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora P0318 CTR1 | (none) | GTGTTGCTTGGCA-TTTTGCTG-------- |
| Phytophthora citrophthora P3078 CTR1 | (none) | ----TGCTTGGCA-TTTTGCTG-------- |
| Phytophthora citrophthora P3079 CTR1 | (none) | GTGTTGCTTGGCA-TTTTGCTG-------- |
| Phytophthora sp. P3771 CTR3 | (none) | GTGTTGCTTGGCA-TTTTGCTG-------- |
| Phytophthora citrophthora P7487 CTR1 | (none) | GTGTTGCTTGGCA-TTTTGCTG-------- |
| Phytophthora citrophthora STEU6751 GU133567 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7420 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7421 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7422 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7423 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7424 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7425 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7426 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7427 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7428 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7429 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7430 | (none) | GTGTTGCTTGGCA-TTTTGCTG-------- |
| Phytophthora citrophthora STEU7431 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7432 | (none) | GTGTTGCTTGGCA-TTTTGCTG-------- |
| Phytophthora citrophthora STEU7433 | (none) | GTGTTGCTTGGCA-TTTTGCTG-------- |
| Phytophthora citrophthora STEU7434 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7435 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7436 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7437 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7438 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7439 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7440 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7441 | (none) | GTGTTGCTTGGCA-TTTTGCTG-------- |
| Phytophthora citrophthora STEU7442 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7443 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7444 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7445 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7446 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7447 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7448 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7449 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7450 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7451 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7452 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7453 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7454 | (none) | GTGTTGCTTGGCA-TTTTGCTG-------- |
| Phytophthora citrophthora STEU7455 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7456 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7457 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7458 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7459 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7460 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7461 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7462 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7463 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7464 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7465 | (none) | -----GCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7466 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7467 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7468 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7469 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7470 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7472 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7473 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7474 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7475 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7476 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7477 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7478 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7479 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora STEU7480 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora Vi-11 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora Vi-12 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora Vi-21 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora Vi-22 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora CBS 111338 HQ643208 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora CBS 111339 HQ643207 | (none) | GTGTTGCTTGGCG-TTTTGCTG-------- |
| Phytophthora citrophthora CBS 111726 HQ643206 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora CBS 95087 HQ643205 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora P10341 HQ261536 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora citrophthora P10368 HQ261535 | (none) | GTGTTGCTTGGCGTTTTTGCTG-------- |
| Phytophthora colocasiae P6290 HQ261540 | (none) | GTGTTGCTTGGCA-TTTTGCTG-------- |
| Phytophthora colocasiae P6317 HQ261539 | (none) | GTGTTGCTTGGCA-TTTTGCTG-------- |
| Phytophthora meadii CBS 21988 HQ643268 | (none) | GTGTTGCTTGGCA-TTTTGCTG-------- |
| Phytophthora meadii P6128 HQ261607 | (none) | GTGTTGCTTGGCA-TTTTGCTG-------- |
| Phytophthora himalsilva 44 HM752784 | (none) | GTGTTGCTTGGCG-TTTTGCTG-------- |
| Phytophthora himalsilva 60 HM752785 | (none) | GTGTTGCTTGGCG-TTTTGCTG-------- |
| Phytophthora himalsilva 61 HM752786 | (none) | GTGTTGCTTGGCG-TTTTGCTG-------- |
| Phytophthora himalsilva 72 HM752787 | (none) | GTGTTGCTTGGCG-TTTTGCTG-------- |
| Phytophthora himalsilva 73 HM752788 | (none) | GTGTTGCTTGGCG-TTTTGCTG-------- |
| Phytophthora himalsilva 86 HM752789 | (none) | GTGTTGCTTGGCG-TTTTGCTG-------- |
| Phytophthora aff. botryosa CBS 23530 HQ643140 | (none) | GTGTTGCTTGGCA-TTTTGCTG-------- |
| Phytophthora aff. botryosa CBS 23828 HQ643139 | (none) | ----------GCA-TTTTGCTG-------- |
| Phytophthora botryosa CBS 58169 HQ643151 | (none) | GTGTTGCTTGGCG-TTTTGCTG-------- |
| Phytophthora botryosa P1044 HQ261510 | (none) | GTGGTGCTTGGGG-TTTTGTTG-------- |
| Phytophthora botryosa P3425 HQ261509 | (none) | GTGTTGCTTGGCG-TTTTGCTG-------- |
| Phytophthora botryosa P6944 HQ261508 | (none) | GTGTTGCTTGGCG-TTTTGCTG-------- |
| Phytophthora botryosa P6945 HQ261507 | (none) | GTGTTGCTTGGCG-TTTTGCTG-------- |
| Phytophthora multivesiculata CBS 54596 HQ643288 | (none) | GTCTTGCTTGGCG-TGCGGCTGCTGGCCTT |
| Phytophthora multivesiculata P10670 HQ261624 | (none) | GTCTTGCTTGGCG-TGCGGCTGCTGGCCTT |
| Phytophthora plurivora CBS 124089 FJ665227 | (none) | GTCTTGCTTTTT------------------ |
| Phytophthora plurivora CBS 124091 FJ665229 | (none) | GTCTTGCTTTTT------------------ |
| Phytophthora plurivora P1611 GU191233 | (none) | GTCTTGCTTTTT------------------ |
| Phytophthora plurivora PLU77 FJ665230 | (none) | GTCTTGCTTTTT------------------ |
| Phytophthora plurivora PLU92 FJ665231 | (none) | GTCTTGCTTTTT------------------ |
| Phytophthora sp. emzansi STEU6269 GU191228 | (none) | GTCTTGC-TTTT------------------ |
| Phytophthora sp. emzansi STEU6272 GU191220 | (none) | GTCTTGC-TTTT------------------ |
| Phytophthora bisheria P10117 HQ261503 | (none) | AT-TTGCTTGGTGTGCGGCTAGCTGGCCTT |
| Phytophthora bisheria P11311 HQ261502 | (none) | AT-TTGCTTGGTGTGCGGCTAGCTGGCCTT |
| Phytophthora bisheria P7191 HQ261501 | (none) | AT-TTGCTTGGTGTGCGGCTAGCTGGCCTT |
| Phytophthora capensis P1819 GU191232 | (none) | GTCTTGC-TTTT------------------ |
| Phytophthora capensis P1823 GU191231 | (none) | GTCTTGC-TTTT------------------ |
| Phytophthora sp. P1200 CTR2 | (none) | GTCTTGT----------------------- |
| Phytophthora sp. AL-2010b P1212 HQ261706 CTR2 | (none) | GTCTTGT----------------------- |
| Phytophthora capsici P1319 HQ261519 | (none) | GTCTTGT----------------------- |
| Phytophthora glovera P10619 | (none) | GTCTTGT----------------------- |
| Phytophthora sp. capsici P10386 HQ261520 | (none) | GTCTTGT----------------------- |
| Phytophthora mengei P1165 GU191235 | (none) | GTCTTGT----------------------- |
| Phytophthora mengei P1275 HQ261618 | (none) | GTCTTGT----------------------- |
| Phytophthora mengei P10139 HQ261619 | (none) | GTCTTGT----------------------- |
| Phytophthora mengei P0513 GU191234 | (none) | GTCTTGT----------------------- |
| Phytophthora tropicalis P6522 HQ261720 | (none) | GTCTTGT----------------------- |
| Phytophthora tropicalis CBS 43491 HQ643369 | (none) | GTCTTGT----------------------- |
| Phytophthora citricola CBS 22188 HQ643201 | (none) | GTCTTGCTTTTT------------------ |
| Phytophthora siskiyouensis P15122 HQ261674 | (none) | GTCTTGT----------------------- |
| Phytophthora siskiyouensis P16301 HQ261672 | (none) | GTCTTGT----------------------- |
| Phytophthora citricola STEU6750 GU133568 | (none) | GCCTTGC-TTTT------------------ |
| Phytophthora heveae P1000 HQ261574 | (none) | GC-GAGTTTGGCG--GCTGCTG-------- |
| Phytophthora katsurae P6921 HQ261599 | (none) | GC-GAGTTTGGCG--GCGGCTGCTGGCTTT |
Columns
None of the columns has a description.
