@ARTICLE{TreeBASE2Ref18210,
author = {Yong-Mei Xia and W. J. Kress and Linda M. Prince},
title = {Phylogenetic analyses of Amomum (Alpinioideae: Zingiberaceae) using ITS and mat DNA sequence data.},
year = {2004},
keywords = {},
doi = {},
url = {},
pmid = {},
journal = {Systematic Botany},
volume = {},
number = {},
pages = {},
abstract = {Comparative sequencing of the nuclear ribosomal Internal Transcribed Spacer (ITS) and the chloroplast matK coding and non-coding regions was used to examine the evolutionary relationships among 53 accessions representing 13 genera of the Zingiberaceae, including 31 accessions of Amomum (Alpinioideae). Phylogenetic analyses of the ITS and matK sequences alone and in combination using maximum parsimony methods produced a moderately supported topology within Alpinioideae. Our results indicated that Amomum as currently defined is polyphyletic with three major groups of species that do not correspond with any previously recognized sectional classification of the genus. Our analyses also identified Paramomum as sister to Elettariopsis, which are both embedded within one group of Amomum. The other two groups of Amomum share common ancestors with additional genera of the Alpinioideae. ITS and matK sequences provide new data for inferring relationships within Amomum and allow fresh interpretations of morphological characters (such as anther appendage and fruit type) that may be of value in future classifications.}
}
Matrix 3954 of Study 1172

Citation title:
"Phylogenetic analyses of Amomum (Alpinioideae: Zingiberaceae) using ITS and mat DNA sequence data.".

This study was previously identified under the legacy study ID S1080
(Status: Published).
Matrices
Title: Fig. 1
Description: Legacy TreeBASE Matrix ID = M773
Rows
|
Taxon Label |
Row Segments |
Characters 1?–30 |
| Fusarium sambucinum NRRL13708 |
(none)
|
CGCCCGTCGCTACTACCGATTGAATGGCTC |
| Memnoniella subsimplex ATCC32334 |
(none)
|
CGCCCGTCGCTACTACCGATTGAATGGCTT |
| Memnoniella subsimplex ATCC18838 |
(none)
|
CGCCCGTCGCTACTACCGATTGAATGGCTT |
| Memnoniella subsimplex ATCC22700 |
(none)
|
CGCCCGTCGCTACTACCGATTGAATGGCTT |
| Memnoniella subsimplex ATCC32888 |
(none)
|
CGCCCGTCGCTACTACCGATTGAATGGCTT |
| Memnoniella sp. ATCC22699 |
(none)
|
CGCCCGTCGCTACTACCGATTGAATGGCTT |
| Memnoniella echinata ATCC22697 |
(none)
|
CGCCCGTCGCTACTACCGATTGAATGGCTT |
| Memnoniella echinata ATCC20513 |
(none)
|
CGCCCGTCGCTACTACCGATTGAATGGCTT |
| Memnoniella echinata NRRL1694 |
(none)
|
CGCCCGTCGCTACTACCGATTGAATGGCTT |
| Memnoniella echinata ATCC34173 |
(none)
|
CGCCCGTCGCTACTACCGATTGAATGGCTT |
| Memnoniella echinata NRRL1982 |
(none)
|
CGCCCGTCGCTACTACCGATTGAATGGCTT |
| Memnoniella echinata UAMH6594 |
(none)
|
CGCCCGTCGCTACTACCGATTGAATGGCTT |
Columns
None of the columns has a description.