@ARTICLE{TreeBASE2Ref14514,
author = {K. Agretious Thomas and Ursula Peintner and Meinhard M. Moser and P. Manimohan},
title = {Anamika, a new mycorrhizal genus of Cortinariaceae from India and its phylogenetic position based on ITS and LSU sequences.},
year = {2002},
keywords = {},
doi = {10.1017/S0953756201005445},
url = {},
pmid = {},
journal = {Molecular Ecology},
volume = {106},
number = {2},
pages = {245--251},
abstract = {Anamika gen. nov. is described from Southern India with one species, A. indica. The genus is characterised by spores with a strongly cavernous type of ornamentation due to cavernae in the epitunica (perispor), and the possession of cheilo-, pleuro- and caulocystidia. It seems to be associated with Hopea species (Dipterocarpaceae). Molecular data suggest a close relationship to Hebeloma and Naucoria, but indicate that it represents an independent line of evolution.}
}
Matrix 14376 of Study 827
Yikes!
javax.el.ELException: Problems calling function [fn:length] at org.apache.el.parser.AstFunction.getValue(AstFunction.java:197) at org.apache.el.parser.AstGreaterThan.getValue(AstGreaterThan.java:36) at org.apache.el.ValueExpressionImpl.getValue(ValueExpressionImpl.java:189) at org.apache.jasper.runtime.PageContextImpl.proprietaryEvaluate(PageContextImpl.java:942) at org.apache.jsp.WEB_002dINF.pages.search.study.matrix_jsp._jspx_meth_c_005fif_005f2(matrix_jsp.java:851) at org.apache.jsp.WEB_002dINF.pages.search.study.matrix_jsp._jspx_meth_c_005fforEach_005f0(matrix_jsp.java:813) at org.apache.jsp.WEB_002dINF.pages.search.study.matrix_jsp._jspService(matrix_jsp.java:227) at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70) at javax.servlet.http.HttpServlet.service(HttpServlet.java:583) at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:465) at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:383) at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:331) at javax.servlet.http.HttpServlet.service(HttpServlet.java:583) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:212) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156) at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:51) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156) at com.opensymphony.module.sitemesh.filter.PageFilter.doFilter(PageFilter.java:39) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156) at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:662) at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:428) at org.apache.catalina.core.ApplicationDispatcher.doForward(ApplicationDispatcher.java:360) at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:297) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at net.bull.javamelody.JspWrapper.invoke(JspWrapper.java:152) at net.bull.javamelody.JdbcWrapper$DelegatingInvocationHandler.invoke(JdbcWrapper.java:294) at com.sun.proxy.$Proxy159.forward(Unknown Source) at org.springframework.web.servlet.view.InternalResourceView.renderMergedOutputModel(InternalResourceView.java:142) at org.springframework.web.servlet.view.AbstractView.render(AbstractView.java:239) at org.springframework.web.servlet.DispatcherServlet.render(DispatcherServlet.java:1142) at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:879) at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:792) at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:476) at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:431) at javax.servlet.http.HttpServlet.service(HttpServlet.java:489) at javax.servlet.http.HttpServlet.service(HttpServlet.java:583) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:212) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156) at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:51) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156) at net.bull.javamelody.MonitoringFilter.doFilter(MonitoringFilter.java:239) at net.bull.javamelody.MonitoringFilter.doFilter(MonitoringFilter.java:215) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156) at org.tuckey.web.filters.urlrewrite.RuleChain.handleRewrite(RuleChain.java:164) at org.tuckey.web.filters.urlrewrite.RuleChain.doRules(RuleChain.java:141) at org.tuckey.web.filters.urlrewrite.UrlRewriter.processRequest(UrlRewriter.java:90) at org.tuckey.web.filters.urlrewrite.UrlRewriteFilter.doFilter(UrlRewriteFilter.java:406) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156) at org.displaytag.filter.ResponseOverrideFilter.doFilter(ResponseOverrideFilter.java:125) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156) at org.springframework.orm.hibernate3.support.OpenSessionInViewFilter.doFilterInternal(OpenSessionInViewFilter.java:198) at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:75) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156) at com.opensymphony.module.sitemesh.filter.PageFilter.parsePage(PageFilter.java:119) at com.opensymphony.module.sitemesh.filter.PageFilter.doFilter(PageFilter.java:55) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156) at org.acegisecurity.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:264) at org.acegisecurity.intercept.web.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:107) at org.acegisecurity.intercept.web.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:72) at org.acegisecurity.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:274) at org.acegisecurity.ui.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:110) at org.acegisecurity.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:274) at org.acegisecurity.wrapper.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:81) at org.acegisecurity.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:274) at org.acegisecurity.ui.AbstractProcessingFilter.doFilter(AbstractProcessingFilter.java:217) at org.acegisecurity.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:274) at org.acegisecurity.context.HttpSessionContextIntegrationFilter.doFilter(HttpSessionContextIntegrationFilter.java:191) at org.acegisecurity.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:274) at org.acegisecurity.util.FilterChainProxy.doFilter(FilterChainProxy.java:148) at org.acegisecurity.util.FilterToBeanProxy.doFilter(FilterToBeanProxy.java:90) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156) at net.bull.javamelody.MonitoringFilter.doFilter(MonitoringFilter.java:199) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:168) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:90) at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:483) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:130) at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:93) at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:679) at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:74) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:346) at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:617) at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:63) at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:934) at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1690) at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:52) at org.apache.tomcat.util.threads.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1191) at org.apache.tomcat.util.threads.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:659) at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:63) at java.lang.Thread.run(Thread.java:750) Caused by: org.hibernate.exception.GenericJDBCException: could not initialize a collection batch: [org.cipres.treebase.domain.matrix.MatrixRow.segments#<1076816, 1077029, 1077038, 1077417, 1077760, 1077489, 1076953, 1077750>] at org.hibernate.exception.SQLStateConverter.handledNonSpecificException(SQLStateConverter.java:103) at org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:91) at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:43) at org.hibernate.loader.Loader.loadCollectionBatch(Loader.java:2039) at org.hibernate.loader.collection.BatchingCollectionInitializer.initialize(BatchingCollectionInitializer.java:47) at org.hibernate.persister.collection.AbstractCollectionPersister.initialize(AbstractCollectionPersister.java:565) at org.hibernate.event.def.DefaultInitializeCollectionEventListener.onInitializeCollection(DefaultInitializeCollectionEventListener.java:63) at org.hibernate.impl.SessionImpl.initializeCollection(SessionImpl.java:1716) at org.hibernate.collection.AbstractPersistentCollection.initialize(AbstractPersistentCollection.java:344) at org.hibernate.collection.AbstractPersistentCollection.read(AbstractPersistentCollection.java:86) at org.hibernate.collection.AbstractPersistentCollection.readSize(AbstractPersistentCollection.java:109) at org.hibernate.collection.PersistentSet.size(PersistentSet.java:139) at java.util.Collections$UnmodifiableCollection.size(Collections.java:1032) at org.apache.taglibs.standard.functions.Functions.length(Functions.java:193) at sun.reflect.GeneratedMethodAccessor284.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.apache.el.parser.AstFunction.getValue(AstFunction.java:186) ... 102 more Caused by: org.postgresql.util.PSQLException: ERROR: current transaction is aborted, commands ignored until end of transaction block at org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:2676) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:2366) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:356) at org.postgresql.jdbc.PgStatement.executeInternal(PgStatement.java:496) at org.postgresql.jdbc.PgStatement.execute(PgStatement.java:413) at org.postgresql.jdbc.PgPreparedStatement.executeWithFlags(PgPreparedStatement.java:190) at org.postgresql.jdbc.PgPreparedStatement.executeQuery(PgPreparedStatement.java:134) at org.apache.tomcat.dbcp.dbcp2.DelegatingPreparedStatement.executeQuery(DelegatingPreparedStatement.java:106) at org.apache.tomcat.dbcp.dbcp2.DelegatingPreparedStatement.executeQuery(DelegatingPreparedStatement.java:106) at org.hibernate.jdbc.AbstractBatcher.getResultSet(AbstractBatcher.java:186) at org.hibernate.loader.Loader.getResultSet(Loader.java:1787) at org.hibernate.loader.Loader.doQuery(Loader.java:674) at org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:236) at org.hibernate.loader.Loader.loadCollectionBatch(Loader.java:2032) ... 116 more Caused by: org.postgresql.util.PSQLException: ERROR: canceling statement due to user request at org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:2676) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:2366) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:356) at org.postgresql.jdbc.PgStatement.executeInternal(PgStatement.java:496) at org.postgresql.jdbc.PgStatement.execute(PgStatement.java:413) at org.postgresql.jdbc.PgPreparedStatement.executeWithFlags(PgPreparedStatement.java:190) at org.postgresql.jdbc.PgPreparedStatement.executeQuery(PgPreparedStatement.java:134) at org.apache.tomcat.dbcp.dbcp2.DelegatingPreparedStatement.executeQuery(DelegatingPreparedStatement.java:106) at org.apache.tomcat.dbcp.dbcp2.DelegatingPreparedStatement.executeQuery(DelegatingPreparedStatement.java:106) at org.hibernate.jdbc.AbstractBatcher.getResultSet(AbstractBatcher.java:186) at org.hibernate.loader.Loader.getResultSet(Loader.java:1787) at org.hibernate.loader.Loader.doQuery(Loader.java:674) at org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:236) at org.hibernate.loader.Loader.loadCollectionBatch(Loader.java:2032) at org.hibernate.loader.collection.BatchingCollectionInitializer.initialize(BatchingCollectionInitializer.java:47) at org.hibernate.persister.collection.AbstractCollectionPersister.initialize(AbstractCollectionPersister.java:565) at org.hibernate.event.def.DefaultInitializeCollectionEventListener.onInitializeCollection(DefaultInitializeCollectionEventListener.java:63) at org.hibernate.impl.SessionImpl.initializeCollection(SessionImpl.java:1716) at org.hibernate.collection.AbstractPersistentCollection.initialize(AbstractPersistentCollection.java:344) at org.hibernate.collection.AbstractPersistentCollection.read(AbstractPersistentCollection.java:86) at org.hibernate.collection.PersistentList.iterator(PersistentList.java:115) at org.cipres.treebase.domain.matrix.CharacterMatrix.getAllTaxonLabels(CharacterMatrix.java:571) at org.cipres.treebase.web.controllers.SearchSummaryController.showForm(SearchSummaryController.java:421) at org.springframework.web.servlet.mvc.AbstractFormController.showNewForm(AbstractFormController.java:338) at org.springframework.web.servlet.mvc.AbstractFormController.handleRequestInternal(AbstractFormController.java:278) at org.springframework.web.servlet.mvc.AbstractController.handleRequest(AbstractController.java:153) at org.springframework.web.servlet.mvc.SimpleControllerHandlerAdapter.handle(SimpleControllerHandlerAdapter.java:48) at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:858) ... 67 more