@ARTICLE{TreeBASE2Ref18575,
author = {Christoph Bleidorn and Lars Podsiadlowski and Min Zhong and Igor Eeckhaut and Stefanie Hartmann and Kenneth M. Halanych and Ralph Tiedemann},
title = {On the phylogenetic position of Myzostomida: can 77 genes get it wrong?},
year = {2009},
keywords = {},
doi = {10.1186/1471-2148-9-150},
url = {},
pmid = {},
journal = {BMC Evolutionary Biology},
volume = {9},
number = {150},
pages = {150},
abstract = {Background: Phylogenomic analyses recently became popular to address questions about deep metazoan phylogeny. Ribosomal proteins (RP) dominate many of these analyses or are, in some cases, the only genes included. Despite initial hopes, phylogenomic analyses including tens to hundreds of genes still fail to robustly place many bilaterian taxa. Results: Using the phylogenetic position of myzostomids as an example, we show that phylogenies derived from RP genes and mitochondrial genes produce incongruent results. Whereas the former support a position within a clade of platyzoan taxa, mitochondrial data recovers an annelid affinity, which is strongly supported by the gene order data and is congruent with morphology. Using hypothesis testing, our RP data significantly rejects the annelids affinity, whereas a platyzoan relationship is significantly rejected by the mitochondrial data. Conclusions: We conclude (i) that reliance of a set of markers belonging to a single class of macromolecular complexes might bias the analysis, and (ii) that concatenation of all available data might introduce conflicting signal into phylogenetic analyses. We therefore strongly recommend testing for data incongruence in phylogenomic analyses. Furthermore, judging all available data, we consider the annelid affinity hypothesis more plausible than a possible platyzoan affinity for myzostomids, and suspect long branch attraction is influencing the RP data. However, this hypothesis needs further confirmation by future analyses.}
}
Citation for Study 10084
Citation title:
"On the phylogenetic position of Myzostomida: can 77 genes get it wrong?".
This study was previously identified under the legacy study ID S2424
(Status: Published).
Citation
Bleidorn C., Podsiadlowski L., Zhong M., Eeckhaut I., Hartmann S., Halanych K., & Tiedemann R. 2009. On the phylogenetic position of Myzostomida: can 77 genes get it wrong?. BMC Evolutionary Biology, 9(150): 150.
Authors
-
Bleidorn C.
-
Podsiadlowski L.
-
Zhong M.
-
Eeckhaut I.
-
Hartmann S.
-
Halanych K.
-
Tiedemann R.
Abstract
Background: Phylogenomic analyses recently became popular to address questions about deep metazoan phylogeny. Ribosomal proteins (RP) dominate many of these analyses or are, in some cases, the only genes included. Despite initial hopes, phylogenomic analyses including tens to hundreds of genes still fail to robustly place many bilaterian taxa. Results: Using the phylogenetic position of myzostomids as an example, we show that phylogenies derived from RP genes and mitochondrial genes produce incongruent results. Whereas the former support a position within a clade of platyzoan taxa, mitochondrial data recovers an annelid affinity, which is strongly supported by the gene order data and is congruent with morphology. Using hypothesis testing, our RP data significantly rejects the annelids affinity, whereas a platyzoan relationship is significantly rejected by the mitochondrial data. Conclusions: We conclude (i) that reliance of a set of markers belonging to a single class of macromolecular complexes might bias the analysis, and (ii) that concatenation of all available data might introduce conflicting signal into phylogenetic analyses. We therefore strongly recommend testing for data incongruence in phylogenomic analyses. Furthermore, judging all available data, we consider the annelid affinity hypothesis more plausible than a possible platyzoan affinity for myzostomids, and suspect long branch attraction is influencing the RP data. However, this hypothesis needs further confirmation by future analyses.
External links
About this resource
- Canonical resource URI:
http://purl.org/phylo/treebase/phylows/study/TB2:S10084
- Other versions:
Nexus
NeXML
- Show BibTeX reference
@ARTICLE{TreeBASE2Ref18575,
author = {Christoph Bleidorn and Lars Podsiadlowski and Min Zhong and Igor Eeckhaut and Stefanie Hartmann and Kenneth M. Halanych and Ralph Tiedemann},
title = {On the phylogenetic position of Myzostomida: can 77 genes get it wrong?},
year = {2009},
keywords = {},
doi = {10.1186/1471-2148-9-150},
url = {},
pmid = {},
journal = {BMC Evolutionary Biology},
volume = {9},
number = {150},
pages = {150},
abstract = {Background: Phylogenomic analyses recently became popular to address questions about deep metazoan phylogeny. Ribosomal proteins (RP) dominate many of these analyses or are, in some cases, the only genes included. Despite initial hopes, phylogenomic analyses including tens to hundreds of genes still fail to robustly place many bilaterian taxa. Results: Using the phylogenetic position of myzostomids as an example, we show that phylogenies derived from RP genes and mitochondrial genes produce incongruent results. Whereas the former support a position within a clade of platyzoan taxa, mitochondrial data recovers an annelid affinity, which is strongly supported by the gene order data and is congruent with morphology. Using hypothesis testing, our RP data significantly rejects the annelids affinity, whereas a platyzoan relationship is significantly rejected by the mitochondrial data. Conclusions: We conclude (i) that reliance of a set of markers belonging to a single class of macromolecular complexes might bias the analysis, and (ii) that concatenation of all available data might introduce conflicting signal into phylogenetic analyses. We therefore strongly recommend testing for data incongruence in phylogenomic analyses. Furthermore, judging all available data, we consider the annelid affinity hypothesis more plausible than a possible platyzoan affinity for myzostomids, and suspect long branch attraction is influencing the RP data. However, this hypothesis needs further confirmation by future analyses.}
}
- Show RIS reference
TY - JOUR
ID - 18575
AU - Bleidorn,Christoph
AU - Podsiadlowski,Lars
AU - Zhong,Min
AU - Eeckhaut,Igor
AU - Hartmann,Stefanie
AU - Halanych,Kenneth M.
AU - Tiedemann,Ralph
T1 - On the phylogenetic position of Myzostomida: can 77 genes get it wrong?
PY - 2009
UR - http://dx.doi.org/10.1186/1471-2148-9-150
N2 - Background: Phylogenomic analyses recently became popular to address questions about deep metazoan phylogeny. Ribosomal proteins (RP) dominate many of these analyses or are, in some cases, the only genes included. Despite initial hopes, phylogenomic analyses including tens to hundreds of genes still fail to robustly place many bilaterian taxa. Results: Using the phylogenetic position of myzostomids as an example, we show that phylogenies derived from RP genes and mitochondrial genes produce incongruent results. Whereas the former support a position within a clade of platyzoan taxa, mitochondrial data recovers an annelid affinity, which is strongly supported by the gene order data and is congruent with morphology. Using hypothesis testing, our RP data significantly rejects the annelids affinity, whereas a platyzoan relationship is significantly rejected by the mitochondrial data. Conclusions: We conclude (i) that reliance of a set of markers belonging to a single class of macromolecular complexes might bias the analysis, and (ii) that concatenation of all available data might introduce conflicting signal into phylogenetic analyses. We therefore strongly recommend testing for data incongruence in phylogenomic analyses. Furthermore, judging all available data, we consider the annelid affinity hypothesis more plausible than a possible platyzoan affinity for myzostomids, and suspect long branch attraction is influencing the RP data. However, this hypothesis needs further confirmation by future analyses.
L3 - 10.1186/1471-2148-9-150
JF - BMC Evolutionary Biology
VL - 9
IS - 150
ER -