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Citation for Study 16364

Citation title: "Evolution of the bamboos (Bambusoideae; Poaceae): a full plastome phylogenomic analysis".

Study name: "Evolution of the bamboos (Bambusoideae; Poaceae): a full plastome phylogenomic analysis".

This study is part of submission 16364 (Status: Published).

Citation

Wysocki W.P., Clark L.G., Attigala L., Ruiz-sanchez E., & Duvall M.R. 2014. Evolution of the bamboos (Bambusoideae; Poaceae): a full plastome phylogenomic analysis. BMC Evolutionary Biology, .

Authors

• Wysocki W.P. (submitter) 630-433-8282
• Clark L.G.
• Attigala L.
• Ruiz-sanchez E.
• Duvall M.R.

Abstract

Bambusoideae (Poaceae) comprise three distinct and well-supported lineages: tropical woody bamboos (Bambuseae), temperate woody bamboos (Arundinarieae) and herbaceous bamboos (Olyreae). Phylogenetic studies using chloroplast markers have generally supported a sister relationship between Bambuseae and Olyreae. This suggests either at least two origins of the woody bamboo syndrome in this subfamily or its loss in Olyreae. Here a full chloroplast genome (plastome) phylogenomic study is presented using the coding and noncoding regions of 13 complete plastomes from the Bambuseae, eight from Olyreae and 10 from Arundinarieae. Trees generated using full plastome sequences support the previously recovered monophyletic relationship between Bambuseae and Olyreae. In addition to these relationships, several unique plastome features were uncovered including the first mitogenome-to-plastome horizontal gene transfer observed in monocots. Phylogenomic agreement with previous published phylogenies reinforces the validity of these studies. Additionally, this study presents the first published plastomes from Neotropical woody bamboos and the first full plastome phylogenomic study performed within the herbaceous bamboos. Although the phylogenomic tree presented in this study is largely robust, additional studies using nuclear genes support monophyly in woody bamboos as well as hybridization among previous woody bamboo lineages. The evolutionary history of the Bambusoideae could be further clarified using transcriptomic techniques to increase sampling among nuclear orthologues and investigate the molecular genetics underlying the development of woody and floral tissues.

Keywords

Poaceae, Bambusoideae, bamboos, phylogenomics, plastome, organellar HGT, chloroplast genome

External links

• DOI: 10.1186/s12862-015-0321-5

About this resource

• Canonical resource URI: http://purl.org/phylo/treebase/phylows/study/TB2:S16364
• Other versions: Nexus NeXML
• Show BibTeX reference

  		@ARTICLE{TreeBASE2Ref23651,
  	 author = {William P. Wysocki and Lynn G Clark and Lakshmi  Attigala and Eduardo  Ruiz-Sanchez and Melvin R Duvall},
  	 title = {Evolution of the bamboos (Bambusoideae; Poaceae): a full plastome phylogenomic analysis},
  	 year = {2014},
  	 keywords = {Poaceae, Bambusoideae, bamboos, phylogenomics, plastome, organellar HGT, chloroplast genome},
  	 doi = {10.1186/s12862-015-0321-5},
  	 url = {http://},
  	 pmid = {},
  	 journal = {BMC Evolutionary Biology},
  	 volume = {},
  	 number = {},
  	 pages = {},
  	 abstract = {Bambusoideae (Poaceae) comprise three distinct and well-supported lineages: tropical woody bamboos (Bambuseae), temperate woody bamboos (Arundinarieae) and herbaceous bamboos (Olyreae). Phylogenetic studies using chloroplast markers have generally supported a sister relationship between Bambuseae and Olyreae. This suggests either at least two origins of the woody bamboo syndrome in this subfamily or its loss in Olyreae. 
  Here a full chloroplast genome (plastome) phylogenomic study is presented using the coding and noncoding regions of 13 complete plastomes from the Bambuseae, eight from Olyreae and 10 from Arundinarieae. Trees generated using full plastome sequences support the previously recovered monophyletic relationship between Bambuseae and Olyreae. In addition to these relationships, several unique plastome features were uncovered including the first mitogenome-to-plastome horizontal gene transfer observed in monocots.  
  Phylogenomic agreement with previous published phylogenies reinforces the validity of these studies. Additionally, this study presents the first published plastomes from Neotropical woody bamboos and the first full plastome phylogenomic study performed within the herbaceous bamboos. Although the phylogenomic tree presented in this study is largely robust, additional studies using nuclear genes support monophyly in woody bamboos as well as hybridization among previous woody bamboo lineages. The evolutionary history of the Bambusoideae could be further clarified using transcriptomic techniques to increase sampling among nuclear orthologues and investigate the molecular genetics underlying the development of woody and floral tissues.
  }
  }
  		

• Show RIS reference

  		TY  - JOUR
  ID  - 23651
  AU  - Wysocki,William P.
  AU  - Clark,Lynn G
  AU  - Attigala,Lakshmi 
  AU  - Ruiz-Sanchez,Eduardo 
  AU  - Duvall,Melvin R
  T1  - Evolution of the bamboos (Bambusoideae; Poaceae): a full plastome phylogenomic analysis
  PY  - 2014
  KW  - Poaceae
  KW  - Bambusoideae
  KW  - bamboos
  KW  - phylogenomics
  KW  - plastome
  KW  - organellar HGT
  KW  - chloroplast genome
  UR  - http://dx.doi.org/10.1186/s12862-015-0321-5
  N2  - Bambusoideae (Poaceae) comprise three distinct and well-supported lineages: tropical woody bamboos (Bambuseae), temperate woody bamboos (Arundinarieae) and herbaceous bamboos (Olyreae). Phylogenetic studies using chloroplast markers have generally supported a sister relationship between Bambuseae and Olyreae. This suggests either at least two origins of the woody bamboo syndrome in this subfamily or its loss in Olyreae. 
  Here a full chloroplast genome (plastome) phylogenomic study is presented using the coding and noncoding regions of 13 complete plastomes from the Bambuseae, eight from Olyreae and 10 from Arundinarieae. Trees generated using full plastome sequences support the previously recovered monophyletic relationship between Bambuseae and Olyreae. In addition to these relationships, several unique plastome features were uncovered including the first mitogenome-to-plastome horizontal gene transfer observed in monocots.  
  Phylogenomic agreement with previous published phylogenies reinforces the validity of these studies. Additionally, this study presents the first published plastomes from Neotropical woody bamboos and the first full plastome phylogenomic study performed within the herbaceous bamboos. Although the phylogenomic tree presented in this study is largely robust, additional studies using nuclear genes support monophyly in woody bamboos as well as hybridization among previous woody bamboo lineages. The evolutionary history of the Bambusoideae could be further clarified using transcriptomic techniques to increase sampling among nuclear orthologues and investigate the molecular genetics underlying the development of woody and floral tissues.
  
  L3  - 10.1186/s12862-015-0321-5
  JF  - BMC Evolutionary Biology
  VL  - 
  IS  - 
  ER  -