@ARTICLE{TreeBASE2Ref29831,
author = {Yi Fei Sun},
title = {Multi-gene phylogeny and taxonomy of Amauroderma s. lat. (Ganodermataceae)},
year = {2019},
keywords = {Polyporales, Ganodermataceae, Ultrastructure, Morphology, Phylogeny},
doi = {},
url = {http://},
pmid = {},
journal = {Persoonia},
volume = {},
number = {},
pages = {},
abstract = {Amauroderma s. lat. is defined mainly by the morphological features of non-truncate and double-walled basidiospores with a distinctly ornamented endospore wall. In this work, taxonomic and phylogenetic studies on species of Amauroderma s. lat. were carried out by morphological examination together with ultrastructural observations, and molecular phylogenetic analyses of multiple loci including the internal transcribed spacer regions (ITS), the large subunit of nuclear ribosomal RNA gene (nLSU), the largest subunit of RNA polymerase II (RPB1) and the second subunit of RNA polymerase II (RPB2), the translation elongation factor 1-α gene (TEF) and the β-tubulin gene (TUB). The results demonstrated that species of Ganodermataceae formed ten clades. Species previously placed in Amauroderma s. lat. were divided into four clades: Amauroderma s. str., Foraminispora, Furtadoa and a new genus Sanguinoderma. The classification of Amauroderma s. lat. is thus revised, six new species are described and illustrated, and eight new combinations are proposed. SEM micrographs of basidiospores of Foraminispora and Sanguinoderma are presented, and the importance of SEM in delimitation of taxa in this study is briefly discussed. Keys to species of Amauroderma s. str., Foraminispora, Furtadoa, and Sanguinoderma are also provided. }
}
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javax.el.ELException: Error reading [person] on type [org.cipres.treebase.domain.admin.User$$EnhancerByCGLIB$$10ff1bcd]
at javax.el.BeanELResolver.getValue(BeanELResolver.java:104)
at org.apache.jasper.el.JasperELResolver.getValue(JasperELResolver.java:112)
at org.apache.el.parser.AstValue.getValue(AstValue.java:168)
at org.apache.el.parser.AstEqual.getValue(AstEqual.java:37)
at org.apache.el.ValueExpressionImpl.getValue(ValueExpressionImpl.java:189)
at org.apache.jasper.runtime.PageContextImpl.proprietaryEvaluate(PageContextImpl.java:942)
at org.apache.jsp.WEB_002dINF.pages.search.study.summary_jsp._jspx_meth_c_005fif_005f2(summary_jsp.java:661)
at org.apache.jsp.WEB_002dINF.pages.search.study.summary_jsp._jspx_meth_c_005fforEach_005f0(summary_jsp.java:590)
at org.apache.jsp.WEB_002dINF.pages.search.study.summary_jsp._jspx_meth_c_005fif_005f1(summary_jsp.java:541)
at org.apache.jsp.WEB_002dINF.pages.search.study.summary_jsp._jspx_meth_c_005fif_005f0(summary_jsp.java:479)
at org.apache.jsp.WEB_002dINF.pages.search.study.summary_jsp._jspService(summary_jsp.java:188)
at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:583)
at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:465)
at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:383)
at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:331)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:583)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:212)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:51)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156)
at com.opensymphony.module.sitemesh.filter.PageFilter.doFilter(PageFilter.java:39)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156)
at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:662)
at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:428)
at org.apache.catalina.core.ApplicationDispatcher.doForward(ApplicationDispatcher.java:360)
at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:297)
at sun.reflect.GeneratedMethodAccessor313.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at net.bull.javamelody.JspWrapper.invoke(JspWrapper.java:152)
at net.bull.javamelody.JdbcWrapper$DelegatingInvocationHandler.invoke(JdbcWrapper.java:294)
at com.sun.proxy.$Proxy159.forward(Unknown Source)
at org.springframework.web.servlet.view.InternalResourceView.renderMergedOutputModel(InternalResourceView.java:142)
at org.springframework.web.servlet.view.AbstractView.render(AbstractView.java:239)
at org.springframework.web.servlet.DispatcherServlet.render(DispatcherServlet.java:1142)
at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:879)
at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:792)
at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:476)
at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:431)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:489)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:583)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:212)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:51)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156)
at net.bull.javamelody.MonitoringFilter.doFilter(MonitoringFilter.java:239)
at net.bull.javamelody.MonitoringFilter.doFilter(MonitoringFilter.java:215)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156)
at org.tuckey.web.filters.urlrewrite.RuleChain.handleRewrite(RuleChain.java:164)
at org.tuckey.web.filters.urlrewrite.RuleChain.doRules(RuleChain.java:141)
at org.tuckey.web.filters.urlrewrite.UrlRewriter.processRequest(UrlRewriter.java:90)
at org.tuckey.web.filters.urlrewrite.UrlRewriteFilter.doFilter(UrlRewriteFilter.java:406)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156)
at org.displaytag.filter.ResponseOverrideFilter.doFilter(ResponseOverrideFilter.java:125)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156)
at org.springframework.orm.hibernate3.support.OpenSessionInViewFilter.doFilterInternal(OpenSessionInViewFilter.java:198)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:75)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156)
at com.opensymphony.module.sitemesh.filter.PageFilter.parsePage(PageFilter.java:119)
at com.opensymphony.module.sitemesh.filter.PageFilter.doFilter(PageFilter.java:55)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156)
at org.acegisecurity.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:264)
at org.acegisecurity.intercept.web.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:107)
at org.acegisecurity.intercept.web.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:72)
at org.acegisecurity.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:274)
at org.acegisecurity.ui.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:110)
at org.acegisecurity.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:274)
at org.acegisecurity.wrapper.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:81)
at org.acegisecurity.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:274)
at org.acegisecurity.ui.AbstractProcessingFilter.doFilter(AbstractProcessingFilter.java:217)
at org.acegisecurity.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:274)
at org.acegisecurity.context.HttpSessionContextIntegrationFilter.doFilter(HttpSessionContextIntegrationFilter.java:191)
at org.acegisecurity.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:274)
at org.acegisecurity.util.FilterChainProxy.doFilter(FilterChainProxy.java:148)
at org.acegisecurity.util.FilterToBeanProxy.doFilter(FilterToBeanProxy.java:90)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156)
at net.bull.javamelody.MonitoringFilter.doFilter(MonitoringFilter.java:199)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:181)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:156)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:168)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:90)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:483)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:130)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:93)
at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:679)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:74)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:342)
at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:617)
at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:63)
at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:934)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1698)
at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:52)
at org.apache.tomcat.util.threads.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1191)
at org.apache.tomcat.util.threads.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:659)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:750)
Caused by: org.hibernate.exception.GenericJDBCException: could not load an entity: [org.cipres.treebase.domain.admin.User#15785]
at org.hibernate.exception.SQLStateConverter.handledNonSpecificException(SQLStateConverter.java:103)
at org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:91)
at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:43)
at org.hibernate.loader.Loader.loadEntity(Loader.java:1874)
at org.hibernate.loader.entity.AbstractEntityLoader.load(AbstractEntityLoader.java:48)
at org.hibernate.loader.entity.AbstractEntityLoader.load(AbstractEntityLoader.java:42)
at org.hibernate.loader.entity.BatchingEntityLoader.load(BatchingEntityLoader.java:82)
at org.hibernate.persister.entity.AbstractEntityPersister.load(AbstractEntityPersister.java:3049)
at org.hibernate.event.def.DefaultLoadEventListener.loadFromDatasource(DefaultLoadEventListener.java:399)
at org.hibernate.event.def.DefaultLoadEventListener.doLoad(DefaultLoadEventListener.java:375)
at org.hibernate.event.def.DefaultLoadEventListener.load(DefaultLoadEventListener.java:139)
at org.hibernate.event.def.DefaultLoadEventListener.onLoad(DefaultLoadEventListener.java:98)
at org.hibernate.impl.SessionImpl.fireLoad(SessionImpl.java:878)
at org.hibernate.impl.SessionImpl.immediateLoad(SessionImpl.java:836)
at org.hibernate.proxy.AbstractLazyInitializer.initialize(AbstractLazyInitializer.java:66)
at org.hibernate.proxy.AbstractLazyInitializer.getImplementation(AbstractLazyInitializer.java:111)
at org.hibernate.proxy.pojo.cglib.CGLIBLazyInitializer.invoke(CGLIBLazyInitializer.java:150)
at org.cipres.treebase.domain.admin.User$$EnhancerByCGLIB$$10ff1bcd.getPerson()
at sun.reflect.GeneratedMethodAccessor407.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at javax.el.BeanELResolver.getValue(BeanELResolver.java:99)
... 105 more
Caused by: org.postgresql.util.PSQLException: This statement has been closed.
at org.postgresql.jdbc.PgStatement.checkClosed(PgStatement.java:742)
at org.postgresql.jdbc.PgStatement.getMaxRows(PgStatement.java:546)
at org.postgresql.jdbc.PgStatement.createResultSet(PgStatement.java:171)
at org.postgresql.jdbc.PgStatement$StatementResultHandler.handleResultRows(PgStatement.java:222)
at org.postgresql.core.ResultHandlerDelegate.handleResultRows(ResultHandlerDelegate.java:31)
at org.postgresql.core.v3.QueryExecutorImpl$1.handleResultRows(QueryExecutorImpl.java:612)
at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:2307)
at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:356)
at org.postgresql.jdbc.PgStatement.executeInternal(PgStatement.java:496)
at org.postgresql.jdbc.PgStatement.execute(PgStatement.java:413)
at org.postgresql.jdbc.PgPreparedStatement.executeWithFlags(PgPreparedStatement.java:190)
at org.postgresql.jdbc.PgPreparedStatement.executeQuery(PgPreparedStatement.java:134)
at org.apache.tomcat.dbcp.dbcp2.DelegatingPreparedStatement.executeQuery(DelegatingPreparedStatement.java:106)
at org.apache.tomcat.dbcp.dbcp2.DelegatingPreparedStatement.executeQuery(DelegatingPreparedStatement.java:106)
at org.hibernate.jdbc.AbstractBatcher.getResultSet(AbstractBatcher.java:186)
at org.hibernate.loader.Loader.getResultSet(Loader.java:1787)
at org.hibernate.loader.Loader.doQuery(Loader.java:674)
at org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:236)
at org.hibernate.loader.Loader.loadEntity(Loader.java:1860)
... 123 more