@ARTICLE{TreeBASE2Ref16602,
author = {Patrick Brandon Matheny and Y. L. Liu and Joseph F. Ammirati and Benjamin D. Hall},
title = {Using RPB1 sequences to improve phylogenetic inference among mushrooms (Inocybe, Agaricales)},
year = {2002},
keywords = {Agaricales; Inocybe; molecular phylogeny; nuclear large subunit ribosomal DNA; RNA polymerase II; RPB1},
doi = {},
url = {http://www.amjbot.org/cgi/content/abstract/89/4/688},
pmid = {},
journal = {American Journal of Botany},
volume = {89},
number = {4},
pages = {688?698},
abstract = {An investigation of mushroom phylogeny using the largest subunit of RNA polymerase II gene sequences (RPB1) was conducted in comparison with nuclear ribosomal large subunit RNA gene sequences (nLSU) for the same set of taxa in the genus Inocybe (Agaricales, Basidiomycota). The two data sets, though not significantly incongruent, exhibit conflict among the placement of two taxa that exhibit long branches in the nLSU data set. In contrast, RPB1 terminal branch lengths are rather uniform. Bootstrap support is increased for clades in RPB1. Combined data sets increase the degree of confidence for several relationships. Overall, nLSU data do not yield a robust phylogeny when independently assessed by RPB1 sequences. This multigene study indicates that Inocybe is a monophyletic group composed of at least four distinct lineages?subgenus Mallocybe, section Cervicolores, section Rimosae, and subgenus Inocybe sensu K?hner, Kuyper, non Singer. Within subgenus Inocybe, two additional lineages, one composed of species with smooth basidiospores (clade I) and a second characterized by nodulose-spored species (clade II), are recovered by RPB1 and combined data. The nLSU data recover only clade I. The genera Astrosporina and Inocybella cannot be recognized phylogenetically. "Supersections" Cortinatae and Marginatae are not monophyletic groups.}
}
Citation for Study 828
Citation title:
"Using RPB1 sequences to improve phylogenetic inference among mushrooms (Inocybe, Agaricales)".
This study was previously identified under the legacy study ID S686
(Status: Published).
Citation
Matheny P.B., Liu Y., Ammirati J., & Hall B. 2002. Using RPB1 sequences to improve phylogenetic inference among mushrooms (Inocybe, Agaricales). American Journal of Botany, 89(4): 688?698.
Authors
-
Matheny P.B.
865-974-8896
-
Liu Y.
-
Ammirati J.
-
Hall B.
Abstract
An investigation of mushroom phylogeny using the largest subunit of RNA polymerase II gene sequences (RPB1) was conducted in comparison with nuclear ribosomal large subunit RNA gene sequences (nLSU) for the same set of taxa in the genus Inocybe (Agaricales, Basidiomycota). The two data sets, though not significantly incongruent, exhibit conflict among the placement of two taxa that exhibit long branches in the nLSU data set. In contrast, RPB1 terminal branch lengths are rather uniform. Bootstrap support is increased for clades in RPB1. Combined data sets increase the degree of confidence for several relationships. Overall, nLSU data do not yield a robust phylogeny when independently assessed by RPB1 sequences. This multigene study indicates that Inocybe is a monophyletic group composed of at least four distinct lineages?subgenus Mallocybe, section Cervicolores, section Rimosae, and subgenus Inocybe sensu K?hner, Kuyper, non Singer. Within subgenus Inocybe, two additional lineages, one composed of species with smooth basidiospores (clade I) and a second characterized by nodulose-spored species (clade II), are recovered by RPB1 and combined data. The nLSU data recover only clade I. The genera Astrosporina and Inocybella cannot be recognized phylogenetically. "Supersections" Cortinatae and Marginatae are not monophyletic groups.
Keywords
Agaricales; Inocybe; molecular phylogeny; nuclear large subunit ribosomal DNA; RNA polymerase II; RPB1
External links
About this resource
- Canonical resource URI:
http://purl.org/phylo/treebase/phylows/study/TB2:S828
- Other versions:
Nexus
NeXML
- Show BibTeX reference
@ARTICLE{TreeBASE2Ref16602,
author = {Patrick Brandon Matheny and Y. L. Liu and Joseph F. Ammirati and Benjamin D. Hall},
title = {Using RPB1 sequences to improve phylogenetic inference among mushrooms (Inocybe, Agaricales)},
year = {2002},
keywords = {Agaricales; Inocybe; molecular phylogeny; nuclear large subunit ribosomal DNA; RNA polymerase II; RPB1},
doi = {},
url = {http://www.amjbot.org/cgi/content/abstract/89/4/688},
pmid = {},
journal = {American Journal of Botany},
volume = {89},
number = {4},
pages = {688?698},
abstract = {An investigation of mushroom phylogeny using the largest subunit of RNA polymerase II gene sequences (RPB1) was conducted in comparison with nuclear ribosomal large subunit RNA gene sequences (nLSU) for the same set of taxa in the genus Inocybe (Agaricales, Basidiomycota). The two data sets, though not significantly incongruent, exhibit conflict among the placement of two taxa that exhibit long branches in the nLSU data set. In contrast, RPB1 terminal branch lengths are rather uniform. Bootstrap support is increased for clades in RPB1. Combined data sets increase the degree of confidence for several relationships. Overall, nLSU data do not yield a robust phylogeny when independently assessed by RPB1 sequences. This multigene study indicates that Inocybe is a monophyletic group composed of at least four distinct lineages?subgenus Mallocybe, section Cervicolores, section Rimosae, and subgenus Inocybe sensu K?hner, Kuyper, non Singer. Within subgenus Inocybe, two additional lineages, one composed of species with smooth basidiospores (clade I) and a second characterized by nodulose-spored species (clade II), are recovered by RPB1 and combined data. The nLSU data recover only clade I. The genera Astrosporina and Inocybella cannot be recognized phylogenetically. "Supersections" Cortinatae and Marginatae are not monophyletic groups.}
}
- Show RIS reference
TY - JOUR
ID - 16602
AU - Matheny,Patrick Brandon
AU - Liu,Y. L.
AU - Ammirati,Joseph F.
AU - Hall,Benjamin D.
T1 - Using RPB1 sequences to improve phylogenetic inference among mushrooms (Inocybe, Agaricales)
PY - 2002
KW - Agaricales; Inocybe; molecular phylogeny; nuclear large subunit ribosomal DNA; RNA polymerase II; RPB1
UR - http://www.amjbot.org/cgi/content/abstract/89/4/688
N2 - An investigation of mushroom phylogeny using the largest subunit of RNA polymerase II gene sequences (RPB1) was conducted in comparison with nuclear ribosomal large subunit RNA gene sequences (nLSU) for the same set of taxa in the genus Inocybe (Agaricales, Basidiomycota). The two data sets, though not significantly incongruent, exhibit conflict among the placement of two taxa that exhibit long branches in the nLSU data set. In contrast, RPB1 terminal branch lengths are rather uniform. Bootstrap support is increased for clades in RPB1. Combined data sets increase the degree of confidence for several relationships. Overall, nLSU data do not yield a robust phylogeny when independently assessed by RPB1 sequences. This multigene study indicates that Inocybe is a monophyletic group composed of at least four distinct lineages?subgenus Mallocybe, section Cervicolores, section Rimosae, and subgenus Inocybe sensu K?hner, Kuyper, non Singer. Within subgenus Inocybe, two additional lineages, one composed of species with smooth basidiospores (clade I) and a second characterized by nodulose-spored species (clade II), are recovered by RPB1 and combined data. The nLSU data recover only clade I. The genera Astrosporina and Inocybella cannot be recognized phylogenetically. "Supersections" Cortinatae and Marginatae are not monophyletic groups.
L3 -
JF - American Journal of Botany
VL - 89
IS - 4
ER -