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Citation for Study 10245

Citation title: "A class-wide phylogenetic assessment of Dothideomycetes".

This study was previously identified under the legacy study ID S2602 (Status: Published).

Citation

Schoch C.L., Crous P.W., Groenewald J.Z., Boehm E., Burgess T., De gruyter J., De hoog G., Dixon L., Grube M., Gueidan C., Harada Y., Hatakeyama S., Hirayama K., Hosoya T., Huhndorf S., Hyde K.D., Jones E., Kruys ?., Kohlmeyer J., Li Y., L?cking R., Lumbsch H., Marvanov? L., Mbatchou J., Mcvay A., Miller A.N., Mugambi G., Muggia L., Nelsen M., Nelson P., Owensby C., Phillips A., Phongpaichit S., Pointing S., Pujade-renaud V., Raja H., Rivas-plata E., Robbertse B., Ruibal C., Sakayaroj J., Sano T., Selbmann L., Shearer C., Shirouzu T., Slippers B., Suetrong S., Tanaka K., Volkmann-kohlmeyer B., Wingfield M.J., Wood A., Woudenberg J., Yonezawa H., Zhang Y., & Spatafora J. 2010. A class-wide phylogenetic assessment of Dothideomycetes. Studies in Mycology, 64(1): 1-1510.

Authors

• Schoch C.L.
• Crous P.W.
• Groenewald J.Z. +31302122600
• Boehm E.
• Burgess T.
• De gruyter J.
• De hoog G.
• Dixon L.
• Grube M.
• Gueidan C.
• Harada Y.
• Hatakeyama S.
• Hirayama K.
• Hosoya T.
• Huhndorf S.
• Hyde K.D.
• Jones E.
• Kruys ?.
• Kohlmeyer J.
• Li Y.
• L?cking R.
• Lumbsch H.
• Marvanov? L.
• Mbatchou J.
• Mcvay A.
• Miller A.N. (217) 244-0439
• Mugambi G.
• Muggia L.
• Nelsen M.
• Nelson P.
• Owensby C.
• Phillips A.
• Phongpaichit S.
• Pointing S.
• Pujade-renaud V.
• Raja H.
• Rivas-plata E.
• Robbertse B.
• Ruibal C.
• Sakayaroj J.
• Sano T.
• Selbmann L.
• Shearer C.
• Shirouzu T.
• Slippers B.
• Suetrong S.
• Tanaka K.
• Volkmann-kohlmeyer B.
• Wingfield M.J.
• Wood A.
• Woudenberg J.
• Yonezawa H.
• Zhang Y.
• Spatafora J.

Abstract

We present a comprehensive phylogeny derived from 5 genes, nucSSU, nucLSU rDNA, TEF1, RPB1 and RPB2, for 356 isolates and 41 families (six newly described in this volume) in Dothideomycetes. All currently accepted orders in the class are represented for the first time in addition to numerous previously unplaced lineages. Subclass Pleosporomycetidae is expanded to include the aquatic order Jahnulales. An ancestral reconstruction of basic nutritional modes supports numerous transitions from saprobic life histories to plant associated and lichenised modes and a transition from terrestrial to aquatic habitats are confirmed. Finally, a genomic comparison of 6 dothideomycete genomes with other fungi finds a high level of unique protein associated with the class, supporting its delineation as a separate taxon.

Keywords

Ascomycota, Pezizomycotina, Dothideomyceta, fungal evolution, lichens, multigene phylogeny, phylogenomics, plant pathogens, saprobes, Tree of Life

External links

• DOI: 10.3114/sim.2009.64.01

About this resource

• Canonical resource URI: http://purl.org/phylo/treebase/phylows/study/TB2:S10245
• Other versions: Nexus NeXML
• Show BibTeX reference

  		@ARTICLE{TreeBASE2Ref18735,
  	 author = {Conrad Lamoraal Schoch and Pedro W. Crous and  Johannes (Ewald) Zacharias Groenewald and Eric W.A.  Boehm and Treena I.  Burgess and Johannes  de Gruyter and G. Sybren  De Hoog and Linley J.  Dixon and Martin  Grube and C?cile  Gueidan and Yukio  Harada and Satoshi  Hatakeyama and Kazuyuki  Hirayama and Tsuyoshi  Hosoya and Sabine M.  Huhndorf and Kevin D Hyde and E. B. Gareth  Jones and ?sa  Kruys and Jan  Kohlmeyer and Yan-Mei  Li and Robert  L?cking and H. Thorsten  Lumbsch and Ludmila  Marvanov? and Joelle S.  Mbatchou and Audrey H.  McVay and Andrew N. Miller and George K.   Mugambi and Luciana  Muggia and Matthew P.  Nelsen and Paul  Nelson and C. Alisha  Owensby and Alan John Lander  Phillips and Souwalak  Phongpaichit and Stephen B.  Pointing and Valerie  Pujade-Renaud and Huzefa A.  Raja and Eimy  Rivas-Plata and Barbara  Robbertse and Constantino  Ruibal and Jariya  Sakayaroj and Teruo  Sano and Laura  Selbmann and Carol A.  Shearer and Takashi  Shirouzu and Bernard  Slippers and Satinee  Suetrong and Kazuaki  Tanaka and Brigitte  Volkmann-Kohlmeyer and Michael J Wingfield and Alan R  Wood and Joyce H. C.  Woudenberg and Hiroaki  Yonezawa and Ying  Zhang and Joseph W.  Spatafora},
  	 title = {A class-wide phylogenetic assessment of Dothideomycetes},
  	 year = {2010},
  	 keywords = {Ascomycota, Pezizomycotina, Dothideomyceta, fungal evolution, lichens, multigene phylogeny, phylogenomics, plant pathogens, saprobes, Tree of Life},
  	 doi = {10.3114/sim.2009.64.01},
  	 url = {},
  	 pmid = {},
  	 journal = {Studies in Mycology},
  	 volume = {64},
  	 number = {1},
  	 pages = {1--1510},
  	 abstract = {We present a comprehensive phylogeny derived from 5 genes, nucSSU, nucLSU rDNA, TEF1, RPB1 and RPB2, for 356 isolates and 41 families (six newly described in this volume) in Dothideomycetes. All currently accepted orders in the class are represented for the first time in addition to numerous previously unplaced lineages. Subclass Pleosporomycetidae is expanded to include the aquatic order Jahnulales. An ancestral reconstruction of basic nutritional modes supports numerous transitions from saprobic life histories to plant associated and lichenised modes and a transition from terrestrial to aquatic habitats are confirmed. Finally, a genomic comparison of 6 dothideomycete genomes with other fungi finds a high level of unique protein associated with the class, supporting its delineation as a separate taxon.}
  }
  		

• Show RIS reference

  		TY  - JOUR
  ID  - 18735
  AU  - Schoch,Conrad Lamoraal
  AU  - Crous,Pedro W.
  AU  - Groenewald, Johannes (Ewald) Zacharias
  AU  - Boehm,Eric W.A. 
  AU  - Burgess,Treena I. 
  AU  - de Gruyter,Johannes 
  AU  - De Hoog,G. Sybren 
  AU  - Dixon,Linley J. 
  AU  - Grube,Martin 
  AU  - Gueidan,C?cile 
  AU  - Harada,Yukio 
  AU  - Hatakeyama,Satoshi 
  AU  - Hirayama,Kazuyuki 
  AU  - Hosoya,Tsuyoshi 
  AU  - Huhndorf,Sabine M. 
  AU  - Hyde,Kevin D
  AU  - Jones,E. B. Gareth 
  AU  - Kruys,?sa 
  AU  - Kohlmeyer,Jan 
  AU  - Li,Yan-Mei 
  AU  - L?cking,Robert 
  AU  - Lumbsch,H. Thorsten 
  AU  - Marvanov?,Ludmila 
  AU  - Mbatchou,Joelle S. 
  AU  - McVay,Audrey H. 
  AU  - Miller,Andrew N.
  AU  - Mugambi,George K.  
  AU  - Muggia,Luciana 
  AU  - Nelsen,Matthew P. 
  AU  - Nelson,Paul 
  AU  - Owensby,C. Alisha 
  AU  - Phillips,Alan John Lander 
  AU  - Phongpaichit,Souwalak 
  AU  - Pointing,Stephen B. 
  AU  - Pujade-Renaud,Valerie 
  AU  - Raja,Huzefa A. 
  AU  - Rivas-Plata,Eimy 
  AU  - Robbertse,Barbara 
  AU  - Ruibal,Constantino 
  AU  - Sakayaroj,Jariya 
  AU  - Sano,Teruo 
  AU  - Selbmann,Laura 
  AU  - Shearer,Carol A. 
  AU  - Shirouzu,Takashi 
  AU  - Slippers,Bernard 
  AU  - Suetrong,Satinee 
  AU  - Tanaka,Kazuaki 
  AU  - Volkmann-Kohlmeyer,Brigitte 
  AU  - Wingfield,Michael J
  AU  - Wood,Alan R 
  AU  - Woudenberg,Joyce H. C. 
  AU  - Yonezawa,Hiroaki 
  AU  - Zhang,Ying 
  AU  - Spatafora,Joseph W. 
  T1  - A class-wide phylogenetic assessment of Dothideomycetes
  PY  - 2010
  KW  - Ascomycota
  KW  - Pezizomycotina
  KW  - Dothideomyceta
  KW  - fungal evolution
  KW  - lichens
  KW  - multigene phylogeny
  KW  - phylogenomics
  KW  - plant pathogens
  KW  - saprobes
  KW  - Tree of Life
  UR  - 
  N2  - We present a comprehensive phylogeny derived from 5 genes, nucSSU, nucLSU rDNA, TEF1, RPB1 and RPB2, for 356 isolates and 41 families (six newly described in this volume) in Dothideomycetes. All currently accepted orders in the class are represented for the first time in addition to numerous previously unplaced lineages. Subclass Pleosporomycetidae is expanded to include the aquatic order Jahnulales. An ancestral reconstruction of basic nutritional modes supports numerous transitions from saprobic life histories to plant associated and lichenised modes and a transition from terrestrial to aquatic habitats are confirmed. Finally, a genomic comparison of 6 dothideomycete genomes with other fungi finds a high level of unique protein associated with the class, supporting its delineation as a separate taxon.
  L3  - 10.3114/sim.2009.64.01
  JF  - Studies in Mycology
  VL  - 64
  IS  - 1
  SP  - 1
  EP  - 1510
  ER  -