@ARTICLE{TreeBASE2Ref23737,
author = {J?r?mie Bardin and Isabelle Rouget and Fabrizio Cecca},
title = {Ontogenetic data analyzed as such in phylogenies},
year = {2014},
keywords = {phylogeny, cladistics, ontogeny, development, ammonite, Amaltheidae, Jurassic, Pliensbachian},
doi = {},
url = {http://},
pmid = {},
journal = {Systematic Biology},
volume = {},
number = {},
pages = {},
abstract = {Ontogeny is rarely included in cladistic analyses of morphological data. When used, the developmental information is reduced to one character for two or three different ontogenetic stages. This paper aims to discuss the use of ontogenetic information for phylogeny reconstruction using cladistics. The objective of this work is to introduce ontogenetic character variations between taxa into the coding scheme. The proposed method is based on (1) the recognition of ontogenetic stages in ontogenetic trajectories, (2) finding regressions which represent well each stage, (3) coding the parameters of these regressions into a taxon/character matrix. These regressions are based on traditional growth models. This method is employed to reconstruct phylogenetic relationships within the ammonite family Amaltheidae. Previous studies have shown the importance of ontogeny for understanding the evolution of this family. 33 characters are used for 25 species. Based on the same data set, a second analysis has been performed only on the adult stage. Comparisons of retention index, bootstrap support and stratigraphic congruence between the two analyses show that the inclusion of ontogeny in this method yields better phylogenetic reconstruction. Independence tests on every pair of character coding shows that ontogenetic variations of the different characters have to be coded separately. }
}
Citation for Study 16472
Citation title:
"Ontogenetic data analyzed as such in phylogenies".
Study name:
"Ontogenetic data analyzed as such in phylogenies".
This study is part of submission 16472
(Status: Published).
Citation
Bardin J., Rouget I., & Cecca F. 2014. Ontogenetic data analyzed as such in phylogenies. Systematic Biology, .
Authors
-
Bardin J.
(submitter)
-
Rouget I.
-
Cecca F.
Abstract
Ontogeny is rarely included in cladistic analyses of morphological data. When used, the developmental information is reduced to one character for two or three different ontogenetic stages. This paper aims to discuss the use of ontogenetic information for phylogeny reconstruction using cladistics. The objective of this work is to introduce ontogenetic character variations between taxa into the coding scheme. The proposed method is based on (1) the recognition of ontogenetic stages in ontogenetic trajectories, (2) finding regressions which represent well each stage, (3) coding the parameters of these regressions into a taxon/character matrix. These regressions are based on traditional growth models. This method is employed to reconstruct phylogenetic relationships within the ammonite family Amaltheidae. Previous studies have shown the importance of ontogeny for understanding the evolution of this family. 33 characters are used for 25 species. Based on the same data set, a second analysis has been performed only on the adult stage. Comparisons of retention index, bootstrap support and stratigraphic congruence between the two analyses show that the inclusion of ontogeny in this method yields better phylogenetic reconstruction. Independence tests on every pair of character coding shows that ontogenetic variations of the different characters have to be coded separately.
Keywords
phylogeny, cladistics, ontogeny, development, ammonite, Amaltheidae, Jurassic, Pliensbachian
External links
About this resource
- Canonical resource URI:
http://purl.org/phylo/treebase/phylows/study/TB2:S16472
- Other versions:
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NeXML
- Show BibTeX reference
@ARTICLE{TreeBASE2Ref23737,
author = {J?r?mie Bardin and Isabelle Rouget and Fabrizio Cecca},
title = {Ontogenetic data analyzed as such in phylogenies},
year = {2014},
keywords = {phylogeny, cladistics, ontogeny, development, ammonite, Amaltheidae, Jurassic, Pliensbachian},
doi = {},
url = {http://},
pmid = {},
journal = {Systematic Biology},
volume = {},
number = {},
pages = {},
abstract = {Ontogeny is rarely included in cladistic analyses of morphological data. When used, the developmental information is reduced to one character for two or three different ontogenetic stages. This paper aims to discuss the use of ontogenetic information for phylogeny reconstruction using cladistics. The objective of this work is to introduce ontogenetic character variations between taxa into the coding scheme. The proposed method is based on (1) the recognition of ontogenetic stages in ontogenetic trajectories, (2) finding regressions which represent well each stage, (3) coding the parameters of these regressions into a taxon/character matrix. These regressions are based on traditional growth models. This method is employed to reconstruct phylogenetic relationships within the ammonite family Amaltheidae. Previous studies have shown the importance of ontogeny for understanding the evolution of this family. 33 characters are used for 25 species. Based on the same data set, a second analysis has been performed only on the adult stage. Comparisons of retention index, bootstrap support and stratigraphic congruence between the two analyses show that the inclusion of ontogeny in this method yields better phylogenetic reconstruction. Independence tests on every pair of character coding shows that ontogenetic variations of the different characters have to be coded separately. }
}
- Show RIS reference
TY - JOUR
ID - 23737
AU - Bardin,J?r?mie
AU - Rouget,Isabelle
AU - Cecca,Fabrizio
T1 - Ontogenetic data analyzed as such in phylogenies
PY - 2014
KW - phylogeny
KW - cladistics
KW - ontogeny
KW - development
KW - ammonite
KW - Amaltheidae
KW - Jurassic
KW - Pliensbachian
UR - http://dx.doi.org/
N2 - Ontogeny is rarely included in cladistic analyses of morphological data. When used, the developmental information is reduced to one character for two or three different ontogenetic stages. This paper aims to discuss the use of ontogenetic information for phylogeny reconstruction using cladistics. The objective of this work is to introduce ontogenetic character variations between taxa into the coding scheme. The proposed method is based on (1) the recognition of ontogenetic stages in ontogenetic trajectories, (2) finding regressions which represent well each stage, (3) coding the parameters of these regressions into a taxon/character matrix. These regressions are based on traditional growth models. This method is employed to reconstruct phylogenetic relationships within the ammonite family Amaltheidae. Previous studies have shown the importance of ontogeny for understanding the evolution of this family. 33 characters are used for 25 species. Based on the same data set, a second analysis has been performed only on the adult stage. Comparisons of retention index, bootstrap support and stratigraphic congruence between the two analyses show that the inclusion of ontogeny in this method yields better phylogenetic reconstruction. Independence tests on every pair of character coding shows that ontogenetic variations of the different characters have to be coded separately.
L3 -
JF - Systematic Biology
VL -
IS -
ER -
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