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Citation for Study 1993

Citation title: "Accounting for Phylogenetic Uncertainty in Biogeography: A Bayesian Approach to Dispersal-Vicariance Analysis of the Thrushes (Aves: Turdus)".

This study was previously identified under the legacy study ID S1978 (Status: Published).

Citation

Nylander J., Olsson U., Alstr?m P., & Sanmart?n I. 2008. Accounting for Phylogenetic Uncertainty in Biogeography: A Bayesian Approach to Dispersal-Vicariance Analysis of the Thrushes (Aves: Turdus). Systematic Biology, 57(2): 257-268.

Authors

• Nylander J.
• Olsson U.
• Alstr?m P.
• Sanmart?n I.

Abstract

The phylogeny of the thrushes (Aves: Turdus) has been difficult to reconstruct due to short internal branches and lack of node support for certain parts of the tree. Reconstructing the biogeographic history of this group is further complicated by the fact that current implementations of biogeographic methods, such as dispersal-vicariance analysis (DIVA; Ronquist, 1997), require a fully resolved tree. Here, we apply a Bayesian approach to dispersal-vicariance analysis that accounts for phylogenetic uncertainty and allows a more accurate analysis of the biogeographic history of lineages. Specifically, ancestral area reconstructions can be presented as marginal distributions, thus displaying the underlying topological uncertainty. Moreover, if there are multiple optimal solutions for a single node on a certain tree, integrating over the posterior distribution of trees often reveals a preference for a narrower set of solutions. We find that despite the uncertainty in tree topology, ancestral area reconstructions indicate that the Turdus clade originated in the eastern Palearctic during the Late Miocene. This was followed by an early dispersal to Africa from where a worldwide radiation took place. The uncertainty in tree topology and short branch lengths seems to indicate that this radiation took place within a limited time span during the Late Pliocene. The results support the role of Africa as a probable source area for inter-continental dispersals as suggested for other passerine groups, including basal diversification within the songbird tree.

External links

• DOI: 10.1080/10635150802044003

About this resource

• Canonical resource URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1993
• Other versions: Nexus NeXML
• Show BibTeX reference

  		@ARTICLE{TreeBASE2Ref16876,
  	 author = {Johan A. A.  Nylander and Urban  Olsson and Per  Alstr?m and Isabel  Sanmart?n},
  	 title = {Accounting for Phylogenetic Uncertainty in Biogeography: A Bayesian Approach to Dispersal-Vicariance Analysis of the Thrushes (Aves: Turdus)},
  	 year = {2008},
  	 keywords = {},
  	 doi = {10.1080/10635150802044003},
  	 url = {},
  	 pmid = {},
  	 journal = {Systematic Biology},
  	 volume = {57},
  	 number = {2},
  	 pages = {257--268},
  	 abstract = {The phylogeny of the thrushes (Aves: Turdus) has been difficult to reconstruct due to short internal branches and lack of node support for certain parts of the tree. Reconstructing the biogeographic history of this group is further complicated by the fact that current implementations of biogeographic methods, such as dispersal-vicariance analysis (DIVA; Ronquist, 1997), require a fully resolved tree. Here, we apply a Bayesian approach to dispersal-vicariance analysis that accounts for phylogenetic uncertainty and allows a more accurate analysis of the biogeographic history of lineages. Specifically, ancestral area reconstructions can be presented as marginal distributions, thus displaying the underlying topological uncertainty. Moreover, if there are multiple optimal solutions for a single node on a certain tree, integrating over the posterior distribution of trees often reveals a preference for a narrower set of solutions. We find that despite the uncertainty in tree topology, ancestral area reconstructions indicate that the Turdus clade originated in the eastern Palearctic during the Late Miocene. This was followed by an early dispersal to Africa from where a worldwide radiation took place. The uncertainty in tree topology and short branch lengths seems to indicate that this radiation took place within a limited time span during the Late Pliocene. The results support the role of Africa as a probable source area for inter-continental dispersals as suggested for other passerine groups, including basal diversification within the songbird tree.}
  }
  		

• Show RIS reference

  		TY  - JOUR
  ID  - 16876
  AU  - Nylander,Johan A. A. 
  AU  - Olsson,Urban 
  AU  - Alstr?m,Per 
  AU  - Sanmart?n,Isabel 
  T1  - Accounting for Phylogenetic Uncertainty in Biogeography: A Bayesian Approach to Dispersal-Vicariance Analysis of the Thrushes (Aves: Turdus)
  PY  - 2008
  KW  - 
  UR  - http://dx.doi.org/10.1080/10635150802044003
  N2  - The phylogeny of the thrushes (Aves: Turdus) has been difficult to reconstruct due to short internal branches and lack of node support for certain parts of the tree. Reconstructing the biogeographic history of this group is further complicated by the fact that current implementations of biogeographic methods, such as dispersal-vicariance analysis (DIVA; Ronquist, 1997), require a fully resolved tree. Here, we apply a Bayesian approach to dispersal-vicariance analysis that accounts for phylogenetic uncertainty and allows a more accurate analysis of the biogeographic history of lineages. Specifically, ancestral area reconstructions can be presented as marginal distributions, thus displaying the underlying topological uncertainty. Moreover, if there are multiple optimal solutions for a single node on a certain tree, integrating over the posterior distribution of trees often reveals a preference for a narrower set of solutions. We find that despite the uncertainty in tree topology, ancestral area reconstructions indicate that the Turdus clade originated in the eastern Palearctic during the Late Miocene. This was followed by an early dispersal to Africa from where a worldwide radiation took place. The uncertainty in tree topology and short branch lengths seems to indicate that this radiation took place within a limited time span during the Late Pliocene. The results support the role of Africa as a probable source area for inter-continental dispersals as suggested for other passerine groups, including basal diversification within the songbird tree.
  L3  - 10.1080/10635150802044003
  JF  - Systematic Biology
  VL  - 57
  IS  - 2
  SP  - 257
  EP  - 268
  ER  -