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Citation for Study 990

Citation title: "Phylogenetic Relationships and Evolution of Extant Horsetails, Genus Equisetum, Based on Chloroplast DNA Sequence Data (rbcL and trnL-F).".

This study was previously identified under the legacy study ID S876 (Status: Published).

Citation

Des marais D., Smith A., Britton D., & Pryer K. 2003. Phylogenetic Relationships and Evolution of Extant Horsetails, Genus Equisetum, Based on Chloroplast DNA Sequence Data (rbcL and trnL-F). International Journal of Plant Sciences, null.

Authors

• Des marais D.
• Smith A.
• Britton D.
• Pryer K.

Abstract

Equisetum is a small and morphologically distinct genus with a rich fossil record. Two subgenera have been recognized based principally on stomatal position and stem branching: subg. Equisetum (8 species; superficial stomates; stems branched) and subg. Hippochaete (7 species; sunken stomates; stems generally unbranched). Prior attempts at understanding Equisetum systematics, phylogeny, and character evolution have been hampered by the high degree of morphological plasticity in the genus, as well as frequent hybridization among members within each subgenus. We present the first explicit phylogenetic study of Equisetum, including all 15 species and two samples of one widespread hybrid, E. ferrissii, based on a combined analysis of two chloroplast markers, rbcL and trnL-F. Our robustly supported phylogeny identifies two monophyletic clades corresponding to the two subgenera recognized by earlier workers. The phylogenetic placement of E. bogotense, however, is ambiguous. In maximum likelihood analyses, it allies with subg. Hippochaete as the most basal member, while maximum parsimony places it as sister to the rest of the genus. A consensus phylogeny from the two analyses is presented as a basal trichotomy (E. bogotense, subg. Hippochaete, subg. Equisetum) and morphological character evolution is discussed. We detected rate heterogeneity in the rbcL locus between the two subgenera that can be attributed to an increased rate of nucleotide substitution (transversions) in subg. Hippochaete. We calculated molecular-based age estimates using the penalized likelihood approach, which accounts for rate heterogeneity and does not assume a molecular clock. The Equisetum crown group appears to have diversified in the early Cenozoic, whereas the Equisetaceae total group is estimated to have a Paleozoic origin. These molecular-based age estimates are in remarkable agreement with current interpretations of the fossil record.

About this resource

• Canonical resource URI: http://purl.org/phylo/treebase/phylows/study/TB2:S990
• Other versions: Nexus NeXML
• Show BibTeX reference

  		@ARTICLE{TreeBASE2Ref15252,
  	 author = {David L.  Des Marais and Alan R.  Smith and Donald M.  Britton and Kathleen M.  Pryer},
  	 title = {Phylogenetic Relationships and Evolution of Extant Horsetails, Genus Equisetum, Based on Chloroplast DNA Sequence Data (rbcL and trnL-F).},
  	 year = {2003},
  	 keywords = {},
  	 doi = {},
  	 url = {},
  	 pmid = {},
  	 journal = {International Journal of Plant Sciences},
  	 volume = {},
  	 number = {},
  	 pages = {},
  	 abstract = {Equisetum is a small and morphologically distinct genus with a rich fossil record. Two subgenera have been recognized based principally on stomatal position and stem branching: subg. Equisetum (8 species; superficial stomates; stems branched) and subg. Hippochaete (7 species; sunken stomates; stems generally unbranched). Prior attempts at understanding Equisetum systematics, phylogeny, and character evolution have been hampered by the high degree of morphological plasticity in the genus, as well as frequent hybridization among members within each subgenus. We present the first explicit phylogenetic study of Equisetum, including all 15 species and two samples of one widespread hybrid, E. ferrissii, based on a combined analysis of two chloroplast markers, rbcL and trnL-F. Our robustly supported phylogeny identifies two monophyletic clades corresponding to the two subgenera recognized by earlier workers. The phylogenetic placement of E. bogotense, however, is ambiguous. In maximum likelihood analyses, it allies with subg. Hippochaete as the most basal member, while maximum parsimony places it as sister to the rest of the genus. A consensus phylogeny from the two analyses is presented as a basal trichotomy (E. bogotense, subg. Hippochaete, subg. Equisetum) and morphological character evolution is discussed. We detected rate heterogeneity in the rbcL locus between the two subgenera that can be attributed to an increased rate of nucleotide substitution (transversions) in subg. Hippochaete. We calculated molecular-based age estimates using the penalized likelihood approach, which accounts for rate heterogeneity and does not assume a molecular clock. The Equisetum crown group appears to have diversified in the early Cenozoic, whereas the Equisetaceae total group is estimated to have a Paleozoic origin. These molecular-based age estimates are in remarkable agreement with current interpretations of the fossil record.}
  }
  		

• Show RIS reference

  		TY  - JOUR
  ID  - 15252
  AU  - Des Marais,David L. 
  AU  - Smith,Alan R. 
  AU  - Britton,Donald M. 
  AU  - Pryer,Kathleen M. 
  T1  - Phylogenetic Relationships and Evolution of Extant Horsetails, Genus Equisetum, Based on Chloroplast DNA Sequence Data (rbcL and trnL-F).
  PY  - 2003
  KW  - 
  UR  - 
  N2  - Equisetum is a small and morphologically distinct genus with a rich fossil record. Two subgenera have been recognized based principally on stomatal position and stem branching: subg. Equisetum (8 species; superficial stomates; stems branched) and subg. Hippochaete (7 species; sunken stomates; stems generally unbranched). Prior attempts at understanding Equisetum systematics, phylogeny, and character evolution have been hampered by the high degree of morphological plasticity in the genus, as well as frequent hybridization among members within each subgenus. We present the first explicit phylogenetic study of Equisetum, including all 15 species and two samples of one widespread hybrid, E. ferrissii, based on a combined analysis of two chloroplast markers, rbcL and trnL-F. Our robustly supported phylogeny identifies two monophyletic clades corresponding to the two subgenera recognized by earlier workers. The phylogenetic placement of E. bogotense, however, is ambiguous. In maximum likelihood analyses, it allies with subg. Hippochaete as the most basal member, while maximum parsimony places it as sister to the rest of the genus. A consensus phylogeny from the two analyses is presented as a basal trichotomy (E. bogotense, subg. Hippochaete, subg. Equisetum) and morphological character evolution is discussed. We detected rate heterogeneity in the rbcL locus between the two subgenera that can be attributed to an increased rate of nucleotide substitution (transversions) in subg. Hippochaete. We calculated molecular-based age estimates using the penalized likelihood approach, which accounts for rate heterogeneity and does not assume a molecular clock. The Equisetum crown group appears to have diversified in the early Cenozoic, whereas the Equisetaceae total group is estimated to have a Paleozoic origin. These molecular-based age estimates are in remarkable agreement with current interpretations of the fossil record.
  L3  - 
  JF  - International Journal of Plant Sciences
  VL  - 
  IS  - 
  ER  -