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Citation for Study 22363

Citation title: "Phylogenetic Diversity of 18S rDNA Sequences of Dictyostelids from Amnat Charoen Province, Thailand".

Study name: "Phylogenetic Diversity of 18S rDNA Sequences of Dictyostelids from Amnat Charoen Province, Thailand".

This study is part of submission 22363 (Status: Published).

Citation

Rukseree K., Wonganun K., Palittapongarnpim P., & Ajawatanawong P. 2018. Phylogenetic Diversity of 18S rDNA Sequences of Dictyostelids from Amnat Charoen Province, Thailand. Mycosphere, 9(2): 202-214.

Authors

Rukseree K.
Wonganun K.
Palittapongarnpim P.
Ajawatanawong P.

Abstract

Dictyostelids, a group of social amoebae, are one of the major eukaryotic microbes in soil. They play an important role in the turnover of nutrients and minerals and also in bacterial population control in nature. Species diversity of these microbes has been surveyed globally, but surveys in Thailand are rare. We collected 73 isolates of dictyostelids from soils in two districts of Amnat Charoen Province, Thailand. The majority of dictyostelids recovered from Amnat Charoen Province belong to the genus Dictyostelium, with 48.0%. The 5?-end of the 18S rDNA gene was amplified and sequenced using the Sanger sequencing approach. Phylogenetic trees were reconstructed using three different methods. These were neighbour-joining (NJ), maximum likelihood (ML) and Bayesian inference (BI). The resulting phylogeny suggests that five genera of dictyostelids (Cavenderia, Heterostelium, Raperostelium, Dictyostelium and Polysphondylium) were found in Amnat Charoen Province, with Dictyostelium as the dominant group. These data are the first on the phylogenetic diversity of dictyostelids in north-eastern Thailand and will be useful in the management of natural and microbial resources.

Keywords

dictyostelids, 18S rDNA, phylogenetics, diversity

External links

DOI: 10.5943/mycosphere/9/2/4
Other URL: http://www.mycosphere.org/pdf/MYCOSPHERE_9_2_4.pdf

About this resource

Canonical resource URI: http://purl.org/phylo/treebase/phylows/study/TB2:S22363
Other versions: Nexus NeXML

Show BibTeX reference

		@ARTICLE{TreeBASE2Ref28197,
	 author = {Kamolchanok  Rukseree and Kulawadee  Wonganun and Prasit  Palittapongarnpim and Pravech   Ajawatanawong},
	 title = {Phylogenetic Diversity of 18S rDNA Sequences of Dictyostelids from Amnat Charoen Province, Thailand},
	 year = {2018},
	 keywords = {dictyostelids, 18S rDNA,  phylogenetics, diversity},
	 doi = {10.5943/mycosphere/9/2/4},
	 url = {http://www.mycosphere.org/pdf/MYCOSPHERE_9_2_4.pdf},
	 pmid = {},
	 journal = {Mycosphere},
	 volume = {9},
	 number = {2},
	 pages = {202--214},
	 abstract = {Dictyostelids, a group of social amoebae, are one of the major eukaryotic microbes in soil. They play an important role in the turnover of nutrients and minerals and also in bacterial population control in nature. Species diversity of these microbes has been surveyed globally, but surveys in Thailand are rare. We collected 73 isolates of dictyostelids from soils in two districts of Amnat Charoen Province, Thailand. The majority of dictyostelids recovered from Amnat Charoen Province belong to the genus Dictyostelium, with 48.0%. The 5?-end of the 18S rDNA gene was amplified and sequenced using the Sanger sequencing approach. Phylogenetic trees were reconstructed using three different methods. These were neighbour-joining (NJ), maximum likelihood (ML) and Bayesian inference (BI). The resulting phylogeny suggests that five genera of dictyostelids (Cavenderia, Heterostelium, Raperostelium, Dictyostelium and Polysphondylium) were found in Amnat Charoen Province, with Dictyostelium as the dominant group. These data are the first on the phylogenetic diversity of dictyostelids in north-eastern Thailand and will be useful in the management of natural and microbial resources. }
}

Show RIS reference

TY - JOUR
ID - 28197
AU - Rukseree,Kamolchanok
AU - Wonganun,Kulawadee
AU - Palittapongarnpim,Prasit
AU - Ajawatanawong,Pravech
T1 - Phylogenetic Diversity of 18S rDNA Sequences of Dictyostelids from Amnat Charoen Province, Thailand
PY - 2018
KW - dictyostelids
KW - 18S rDNA
KW - phylogenetics
KW - diversity
UR - http://www.mycosphere.org/pdf/MYCOSPHERE_9_2_4.pdf
N2 - Dictyostelids, a group of social amoebae, are one of the major eukaryotic microbes in soil. They play an important role in the turnover of nutrients and minerals and also in bacterial population control in nature. Species diversity of these microbes has been surveyed globally, but surveys in Thailand are rare. We collected 73 isolates of dictyostelids from soils in two districts of Amnat Charoen Province, Thailand. The majority of dictyostelids recovered from Amnat Charoen Province belong to the genus Dictyostelium, with 48.0%. The 5?-end of the 18S rDNA gene was amplified and sequenced using the Sanger sequencing approach. Phylogenetic trees were reconstructed using three different methods. These were neighbour-joining (NJ), maximum likelihood (ML) and Bayesian inference (BI). The resulting phylogeny suggests that five genera of dictyostelids (Cavenderia, Heterostelium, Raperostelium, Dictyostelium and Polysphondylium) were found in Amnat Charoen Province, with Dictyostelium as the dominant group. These data are the first on the phylogenetic diversity of dictyostelids in north-eastern Thailand and will be useful in the management of natural and microbial resources.
L3 - 10.5943/mycosphere/9/2/4
JF - Mycosphere
VL - 9
IS - 2
SP - 202
EP - 214
ER -