@ARTICLE{TreeBASE2Ref19440,
author = {Martin Ryberg and Patrick Brandon Matheny},
title = {Dealing with incomplete taxon sampling and diversification of a large clade of mushroom-forming fungi},
year = {2011},
keywords = {Bayesian analysis, BEAST, LASER, plant association, radiation},
doi = {10.1111/j.1558-5646.2011.01251.x},
url = {http://},
pmid = {},
journal = {Evolution},
volume = {},
number = {},
pages = {},
abstract = {The absence of an adequate fossil record can hinder understanding the process of diversification that underlies the evolutionary history of a given group. In such cases, investigators have used ultrametric trees derived from molecular data from extant taxa to gain insights into processes of speciation and extinction over time. Inadequate taxon sampling, however, impairs such inferences. In this study, we use simulations to investigate the effect of incomplete taxon sampling on the accumulation of lineages through time for a clade of mushroom-forming fungi, the Hebelomateae. To achieve complete taxon sampling, we use a new Bayesian approach that incorporates substitute lineages to estimate diversification rates. Unlike many studies of animals and plants, we find no evidence of a slowdown in speciation. This indicates the Hebelomateae has not undergone an adaptive radiation. Rather, these fungi have evolved under a relatively constant rate of diversification since their most recent common ancestor, which we date back to the Eocene. The estimated net diversification rate (0.08?0.19 spp./lineage/Ma) is comparable with that of many plants and animals. We suggest that continuous diversification in the Hebelomateae has been facilitated by climatic and vegetation changes throughout the Cenozoic. We also caution against modeling multiple genes as a single partition when performing phylogenetic dating analyses.}
}
Citation for Study 11162
Citation title:
"Dealing with incomplete taxon sampling and diversification of a large clade of mushroom-forming fungi".
Study name:
"Dealing with incomplete taxon sampling and diversification of a large clade of mushroom-forming fungi".
This study is part of submission 11152
(Status: Published).
Citation
Ryberg M., & Matheny P.B. 2011. Dealing with incomplete taxon sampling and diversification of a large clade of mushroom-forming fungi. Evolution, .
Authors
-
Ryberg M.
(submitter)
-
Matheny P.B.
865-974-8896
Abstract
The absence of an adequate fossil record can hinder understanding the process of diversification that underlies the evolutionary history of a given group. In such cases, investigators have used ultrametric trees derived from molecular data from extant taxa to gain insights into processes of speciation and extinction over time. Inadequate taxon sampling, however, impairs such inferences. In this study, we use simulations to investigate the effect of incomplete taxon sampling on the accumulation of lineages through time for a clade of mushroom-forming fungi, the Hebelomateae. To achieve complete taxon sampling, we use a new Bayesian approach that incorporates substitute lineages to estimate diversification rates. Unlike many studies of animals and plants, we find no evidence of a slowdown in speciation. This indicates the Hebelomateae has not undergone an adaptive radiation. Rather, these fungi have evolved under a relatively constant rate of diversification since their most recent common ancestor, which we date back to the Eocene. The estimated net diversification rate (0.08?0.19 spp./lineage/Ma) is comparable with that of many plants and animals. We suggest that continuous diversification in the Hebelomateae has been facilitated by climatic and vegetation changes throughout the Cenozoic. We also caution against modeling multiple genes as a single partition when performing phylogenetic dating analyses.
Keywords
Bayesian analysis, BEAST, LASER, plant association, radiation
External links
About this resource
- Canonical resource URI:
http://purl.org/phylo/treebase/phylows/study/TB2:S11162
- Other versions:
Nexus
NeXML
- Show BibTeX reference
@ARTICLE{TreeBASE2Ref19440,
author = {Martin Ryberg and Patrick Brandon Matheny},
title = {Dealing with incomplete taxon sampling and diversification of a large clade of mushroom-forming fungi},
year = {2011},
keywords = {Bayesian analysis, BEAST, LASER, plant association, radiation},
doi = {10.1111/j.1558-5646.2011.01251.x},
url = {http://},
pmid = {},
journal = {Evolution},
volume = {},
number = {},
pages = {},
abstract = {The absence of an adequate fossil record can hinder understanding the process of diversification that underlies the evolutionary history of a given group. In such cases, investigators have used ultrametric trees derived from molecular data from extant taxa to gain insights into processes of speciation and extinction over time. Inadequate taxon sampling, however, impairs such inferences. In this study, we use simulations to investigate the effect of incomplete taxon sampling on the accumulation of lineages through time for a clade of mushroom-forming fungi, the Hebelomateae. To achieve complete taxon sampling, we use a new Bayesian approach that incorporates substitute lineages to estimate diversification rates. Unlike many studies of animals and plants, we find no evidence of a slowdown in speciation. This indicates the Hebelomateae has not undergone an adaptive radiation. Rather, these fungi have evolved under a relatively constant rate of diversification since their most recent common ancestor, which we date back to the Eocene. The estimated net diversification rate (0.08?0.19 spp./lineage/Ma) is comparable with that of many plants and animals. We suggest that continuous diversification in the Hebelomateae has been facilitated by climatic and vegetation changes throughout the Cenozoic. We also caution against modeling multiple genes as a single partition when performing phylogenetic dating analyses.}
}
- Show RIS reference
TY - JOUR
ID - 19440
AU - Ryberg,Martin
AU - Matheny,Patrick Brandon
T1 - Dealing with incomplete taxon sampling and diversification of a large clade of mushroom-forming fungi
PY - 2011
KW - Bayesian analysis
KW - BEAST
KW - LASER
KW - plant association
KW - radiation
UR - http://dx.doi.org/10.1111/j.1558-5646.2011.01251.x
N2 - The absence of an adequate fossil record can hinder understanding the process of diversification that underlies the evolutionary history of a given group. In such cases, investigators have used ultrametric trees derived from molecular data from extant taxa to gain insights into processes of speciation and extinction over time. Inadequate taxon sampling, however, impairs such inferences. In this study, we use simulations to investigate the effect of incomplete taxon sampling on the accumulation of lineages through time for a clade of mushroom-forming fungi, the Hebelomateae. To achieve complete taxon sampling, we use a new Bayesian approach that incorporates substitute lineages to estimate diversification rates. Unlike many studies of animals and plants, we find no evidence of a slowdown in speciation. This indicates the Hebelomateae has not undergone an adaptive radiation. Rather, these fungi have evolved under a relatively constant rate of diversification since their most recent common ancestor, which we date back to the Eocene. The estimated net diversification rate (0.08?0.19 spp./lineage/Ma) is comparable with that of many plants and animals. We suggest that continuous diversification in the Hebelomateae has been facilitated by climatic and vegetation changes throughout the Cenozoic. We also caution against modeling multiple genes as a single partition when performing phylogenetic dating analyses.
L3 - 10.1111/j.1558-5646.2011.01251.x
JF - Evolution
VL -
IS -
ER -
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